Os01g0146700

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Revision as of 04:21, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0146700| Description = Integrase, catalytic region domain containing protein| Version = NM_001048545.2 GI:297596097 GeneID:4325205| Length ...")
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Gene Name

Os01g0146700

Description

Integrase, catalytic region domain containing protein

Version

NM_001048545.2 GI:297596097 GeneID:4325205

Length

7031 bp

Definition

Oryza sativa Japonica Group Os01g0146700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:2532733..2539763

Sequence Coding Region

2532733..2532754,2534241..2534626,2536256..2537526,2537758..2537884,2539392..2539763

Expression

GEO Profiles:Os01g0146700

Genome Context

<gbrowseImage1> name=NC_008394:2532733..2539763 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:2532733..2539763 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccgcaaataatctactactggtgggtgccgctgctccccgggaagcggaggccggcgacggcgccgccgagtcgaagatcgcggcggcgttgggaacactcggcctggccgccgtctccacggccaccgctttggctgcagcgttcgagccggcggtgacgggtggattcgccgccaacacctactacaacctcgccctggcagtgaccttccttgccggggtgaccctgatcggcgctttagtgtgggtgtccgacaaaccggctgcccgccgccgtgccgccgggaagaagctcctctacgccgccatcccgccgctagtcgccactcgccaccgtcgtcggtctatcggtggcggcgctgctctggatttggaaaccaggaacgtgatcgccaggtgcaatagctctggcgacctctacccgttctacccaccagccaccagcactcatgccctcctcgccgcacccacctcgctttggcatcgtcgtctcgatgattgctcacactacatttggacgtttccactacgcctaaaatccgatactttttccaccattgccaatttctttgcccatgttaaaacgcaattcggcaccaccattaagagcgttcagtgcgataacggccgggagtttgacaattcccctgcccgcacgttcttcctctctcacggtgttgcgtttcgcatgtcgtgtccctacacgtcccagcaaaatggcagggccgagcgctctctccgcacactcaacaatatcttgcgctctctcttatttcaagcatgtcttcctccggtctactgggtcgaggcccttcacaccgccaccctccttgttaaccggatccccaccaagacactgtcctcttccaccccctacttccacctatattcgacccagcccacctatgaccatctacgcgtgtttgggtgtgcttgctatcctaatatgtcatccactgccccccacaaactcgctcctcggtcatccctatgtgttttcctcgggtattcttcggaacacaagggctaccggtgccttgagcttgggtcgaaccgcatcatcacctcccgacatgtcgtttttgatgagtccttttttcccttcgccgacatgtctacatcacccatggcatcctccgccttggatatttttcttgatgataatgaactcaccgctcaaccccctcgagcaaagtttgtgcatgcaggtacctcctccgccgcgcgtggggctgttgagccctccacgccccctcccgcgccgtcgagcatcgggcctcggtccccggctacccttgctggaccagaggccgggccacacggcgggtctccggctggagctgcgaccagccagcctggcgcgatcagtcctgctcgcacggccgcgcccagcgctgcgaccagcactactcgcgctgtgaccagcgcgcctcgtgctgcgaccagcggcacgaccccgtcgctctctcctctggccggtactgctgcccctccgccccgagcggaggtagctgccagtagtaccgcggccaccgggcgtacactggccacccggccggtctccatcgcccccgtcgacaacgcgcactctatgcgcacacgtggcaaggctggcatggcgcagcccgtggatcgtctcaatctccacgcggcgcccctgtcccccgtgcctcgctctgtccgtgaagccttgtcagatcccaattggcgtgctgctatgcaagctgagtttgatgcactgctcgccaatgacacctggagcctcgggcacgacggaggcgcagagcacgaccctcccaaacgcccggcggcggcggccggattcgccggcgttggacacccacaatgcggtccagacctccaccactccggcgaggaagataaccatgagcgtaaggtagtaggcgattgcgtggccctggaagagctcgccatgatcagctggcttgtgaacaagtgtacttacagccatggcgagagtgacgaagcccactccattgagcttcttcctcacggagccgagctcctcttcgccggcgtcttgggcttcgtccgctgcgccaatctcaagattgttgctgtcggcctgcatcgtcgcctgcaggttggctctatcgacctgcagcatcgatcgtcgcagctgacgaattgtgtaacgcagctgaaggcttga</cdnaseq>

Protein Sequence

<aaseq>MAANNLLLVGAAAPREAEAGDGAAESKIAAALGTLGLAAVSTAT ALAAAFEPAVTGGFAANTYYNLALAVTFLAGVTLIGALVWVSDKPAARRRAAGKKLLY AAIPPLVATRHRRRSIGGGAALDLETRNVIARCNSSGDLYPFYPPATSTHALLAAPTS LWHRRLDDCSHYIWTFPLRLKSDTFSTIANFFAHVKTQFGTTIKSVQCDNGREFDNSP ARTFFLSHGVAFRMSCPYTSQQNGRAERSLRTLNNILRSLLFQACLPPVYWVEALHTA TLLVNRIPTKTLSSSTPYFHLYSTQPTYDHLRVFGCACYPNMSSTAPHKLAPRSSLCV FLGYSSEHKGYRCLELGSNRIITSRHVVFDESFFPFADMSTSPMASSALDIFLDDNEL TAQPPRAKFVHAGTSSAARGAVEPSTPPPAPSSIGPRSPATLAGPEAGPHGGSPAGAA TSQPGAISPARTAAPSAATSTTRAVTSAPRAATSGTTPSLSPLAGTAAPPPRAEVAAS STAATGRTLATRPVSIAPVDNAHSMRTRGKAGMAQPVDRLNLHAAPLSPVPRSVREAL SDPNWRAAMQAEFDALLANDTWSLGHDGGAEHDPPKRPAAAAGFAGVGHPQCGPDLHH SGEEDNHERKVVGDCVALEELAMISWLVNKCTYSHGESDEAHSIELLPHGAELLFAGV LGFVRCANLKIVAVGLHRRLQVGSIDLQHRSSQLTNCVTQLKA</aaseq>

Gene Sequence

<dnaseqindica>7010..7031#5138..5523#2238..3508#1880..2006#1..372#atggccgcaaataatctactactggtgggtgccgctgctccccgggaagcggaggccggcgacggcgccgccgagtcgaagatcgcggcggcgttgggaacactcggcctggccgccgtctccacggccaccgctttggctgcagcgttcgagccggcggtgacgggtggattcgccgccaacacctactacaacctcgccctggcagtgaccttccttgccggggtgaccctgatcggcgctttagtgtgggtgtccgacaaaccggctgcccgccgccgtgccgccgggaagaagctcctctacgccgccatcccgccgctagtcgccactcgccaccgtcgtcggtctatcggtggcggcgctgctctggtaagtctcatcacaagcttcgttgtgcccaataatggccggtcgcatcaaaacctatatatgatcggagccaacgataataatatatattgccggcgtccctagcttgctgctgtttgtgttctcatcaatgaagatatatgtacccttttcttccatttggatcgatcgcatgttcgattctgttgttcgcttgctgcgtcgttgtcgtgtcttggagtatgtactagtactccttaattcttatagtagtacattaattgtgtgtgtatcactatcaaatacgtacgtttactgtttttatggctgtcatgttgttcgattattggccggtttaatcgacgagtgttttatactagtacattgtgcttaggccattcccaacgcaataaataggatggtgtccatagcattaaataagctgccacctagaatgaaaaatgatgtggcaagtgaataaatgaaaaaagagaagaaaaccatgtcttgcatgagacatggtttctacacaacatccaagacattatgttagacaagtatcattaaatttaagtatggaatagtagtgtttgcattggaagagtagtgtctagtgctagtttcttaatgatgtggagattatggaaactatgtctagtgtcttgggttgggaatggccttggtagcattaattttcagttcaattaattacatttcgtggagagttcggaagcatgaaactgtgactggtttcatgccgtggtgatggccgcagtgattaaagagaagggagctgcagtgggctacttaaccaggaccttccacagattgggcctcagatttactgagccgtgcactcggatcagagggtggagcccaagtaggcctacgatccaaatatctactgggctgattgggcccaggagcgtagctgggcttataaagtggtggtttgcttgcacgagtgctggatagtggataccaggtaactaaacgagagaatcaggatttctttggttccatgcttgagattaaatagcttcaaatagtttctaatcaagtagtctaatctgctattaatcaggtatgcttacaaaagctacgaatttacagatatataagaaacaaaaagtcactgcttttcgtaaagtatgttcacagtatcaataatgatatatagcctgtactgtacatagtatgggtaaacgactagtgaccatactcaaagcataatgcccacgtatacatcgaattatactcagaatggccactacacagcataattatacaacattatgacgaagaccaaggcgaacagtagtgcaagcaaatctctgctcagctgaacatgttagactaatgtaattaggccttgattgtggatgtaattgggcccgtgcggtgggcctgagtgccaccccagctgcccctatatgtaatcccttgacacttgtggaatacaatcaatcattcccacactttcacttgagcctctattgagtttgatccgtttggtctttctgtgaaggatttggaaaccaggaacgtgatcgccaggtgcaatagctctggcgacctctacccgttctacccaccagccaccagcactcatgccctcctcgccgcacccacctcgctttggcatcgtcgtctcggtcatcttgggcgtgaagctttgtccaagctcattagatccagtgtcatttcatgtactaaagatgatttgcctcatttatgtcatgcttgtcagctcggtcatcacactagacttcctttcagttcttctagttctcgagcttccaataattttgatttaatacactgtgatctgtggacatctcccattgtcagtgtgtcaggctataaatattatcttgtcattttagatgattgctcacactacatttggacgtttccactacgcctaaaatccgatactttttccaccattgccaatttctttgcccatgttaaaacgcaattcggcaccaccattaagagcgttcagtgcgataacggccgggagtttgacaattcccctgcccgcacgttcttcctctctcacggtgttgcgtttcgcatgtcgtgtccctacacgtcccagcaaaatggcagggccgagcgctctctccgcacactcaacaatatcttgcgctctctcttatttcaagcatgtcttcctccggtctactgggtcgaggcccttcacaccgccaccctccttgttaaccggatccccaccaagacactgtcctcttccaccccctacttccacctatattcgacccagcccacctatgaccatctacgcgtgtttgggtgtgcttgctatcctaatatgtcatccactgccccccacaaactcgctcctcggtcatccctatgtgttttcctcgggtattcttcggaacacaagggctaccggtgccttgagcttgggtcgaaccgcatcatcacctcccgacatgtcgtttttgatgagtccttttttcccttcgccgacatgtctacatcacccatggcatcctccgccttggatatttttcttgatgataatgaactcaccgctcaaccccctcgagcaaagtttgtgcatgcaggtacctcctccgccgcgcgtggggctgttgagccctccacgccccctcccgcgccgtcgagcatcgggcctcggtccccggctacccttgctggaccagaggccgggccacacggcgggtctccggctggagctgcgaccagccagcctggcgcgatcagtcctgctcgcacggccgcgcccagcgctgcgaccagcactactcgcgctgtgaccagcgcgcctcgtgctgcgaccagcggcacgaccccgtcgctctctcctctggccggtactgctgcccctccgccccgagcggaggtagctgccagtagtaccgcggccaccgggcgtacactggccacccggccggtctccatcgcccccgtcgacaacgcgcactctatgcgcacacgtggcaaggctggcatggcgcagcccgtggatcgtctcaatctccacgcggcgcccctgtcccccgtgcctcgctctgtccgtgaagccttgtcagatcccaattggcgtgctgctatgcaagctgagtttgatgcactgctcgccaatgacacctggagcctcgttcctcgcccccgcggtgttaacctggtcaccgggaagtggatttttcgtcacaagcttcactctgatgggtctcttgacaggtacaaggctcgttgggttctccggggttttactcagcgacctggtgttgattatgatgagaccttcagcccagtggtcaaaccagcaactgttcgagttgttctctcactggcactctctcaggactggcccatccatcagcttgacgtcaagaatgcttttcttcacggtactctctcggagacagtttattgcattcagccaactggctttgcggacccatctcatgctgatcttgtctgtcgcctcaacaagtcgctatatggcctgaagcaagctccacgtgcctggcatcatcggtttgcttctcacctcatctcccttggatttattgaagcacaatcagattcttccctgtttatccatcggcgcgggaacgacacggtcttgttgctgctctatgttgacgatatcgttctcactgcttcatctgccagtcttctgcagcaggtgatcgctgctcttcagcgtgagttcgctatgacagatatgggtccccttcatcactttttgggcatcaccgtcacgcgttttgccagtggattatttttgtctcaacgtcagtactctcaggacattttggagcgagccgggatgggtgagtgtaaaccttgcagcactcctgttgatgtgcactccaaattgtctgcagatggacctccagttgctgattccacacagtatcgcagtcttgctggcgctctccagtatttgacattcactcgccccgatattgcatttgctgttcaacaagtgtgtctttatatgcatgatcccagggaaccccatttggctgctctcaagaggattctgcgctacatacaaggcaccctgtctctcggtttgaccatgcgccgctcaccaccgacagatcttgttgtatacaccgatgcagattgggcgggctgtccggacacacgtcgctctacttctgggtacgcagtgtttcttggcgataacctcgtatcctggtcctctaagcggcagcacacggtatcacgctccagtgctgaagctgagtaccgcgccgtggcgaatggcgttgcagaggcgacttggctgcgacagctgctgatggagcttcaccgaccacctcgcacagctacagttgtctattgcgacaatgtcagtgcaatgtatctttccagcaacccggtacagcaccaacggacgaagcatgttgagatcgatcttcactttgttcgggagaaggttgccttgggacatgttcgggtacttcacgttcctacgacttcacagtacgccgacgtcttcaccaagggtcttcccacctcgctgtttcaggagtttaggaccagtctaaccattagcgacgctcccgattagactgagggggagtgttagactaatgtaattaggccttgattgtggatgtaattgggcccgtgcggtgggcctgagtgccaccccagctgcccctatatgtaatcccttgacacttgtggaatacaatcaatcattcccacactttcagaacatatttactattacggtgtagccgccgattccggcgacagcagcgaggggcacgacggaggcgcagagcacgaccctcccaaacgcccggcggcggcggccggattcgccggcgttggacacccacaatgcggtccagacctccaccactccggcgaggaagataaccatgagcgtaaggtagtaggcgattgcgtggccctggaagagctcgccatgatcagctggcttgtgaacaagtgtacttacagccatggcgagagtgacgaagcccactccattgagcttcttcctcacggagccgagctcctcttcgccggcgtcttgggcttcgtccgctgcgccaatctcaagattgttgctgtcggcctgcatcgtcgcctgcaggttggctctatcgacctgcagcatcgatcgtcgcagctgacgaattggtggtcgatcgatcactctcgatatctatttggaattccaaattaatgctctagtagtttagtgtgaggttaacgagagagagagacggattatatatatatatatatatatatatatatatatatatataggcgcgcgattagacatatggtgatcttgtggttcaggagaatccaaatgccacctctgctgggccaatttgagcgaattaattaaccaatcttccatttttctgaactcttttgtttggctctgaatcgatgcccttgtgcttgttgtatcgaatctgcgttcccacctttgcgagattgtgccttttaatttcctcgtttcgccgtccctgcagaaactacctgtgctttagacctgattctcaattctcatgcatgcgatgctcttttatttgatagattttgtccactgctcccgatttgtgctacagcatccaactactatgagttcgaggttcaatgccgcactgtccatctctctgtatgtctgtactctgtactgtaacgacctttcgtttaatttgttcggccattaagtagtactaattcatatggagtacttattagcattacacaaagtaattaaattgtccaatgaaagttttaataacataggcaggcataatgacagctgcagctgggccgttcacacagatgtatctgtacaggcaggtcacgagcatatggaatgatttcatttcaacggttgtttgagttttggaattcagaatatgatcgatgtccgtccaactcctatccttatattaccggccgggatcagttcctttccacctatatgtgagctaaactttattcgttggagtaccttctacttttcagcaccagcaacaggagaaccacattagagatttaataattatttgctcccatatagtttcaaggaaattagacatgtactccctccgttttttttaatagatgacgccgttgaccttttatcacgtgtttaccattcgtcttatttaaaaattttattcaaatgtataagatataaattacacttaaagtattatgagtgataaaacaactcataaaaaataaattataattacgtaaattttttaaataaaactaatggtcaaacatgtgataaaaaaattaacggcgttatctatttaaaaaacggaggtagtatgtatctccaaaccttaatgactgcttttgaacaaaggccaggaggtagcactatcggtggctggcattgcctctgtgctcatgcatctcacatgcacatgggcaatgataactgcgaattaatttaacctagcctttttaacagcacacagattttaccgatgtgaattactaccaaccgctaaaagcacattctattctttcttcttctccacttgatacttctctcttttcttaagctatttatttattattctttggtagagtttttttttttctctttgatctgtatgtgtgttttttgattttgtttttttagtgtaacgcagctgaaggcttga</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0146700, RefSeq:Os01g0146700