Os01g0158000

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Revision as of 04:22, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0158000| Description = Importin alpha-2 subunit| Version = NM_001048609.1 GI:115434631 GeneID:4324088| Length = 4763 bp| Definition = Oryz...")
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Gene Name

Os01g0158000

Description

Importin alpha-2 subunit

Version

NM_001048609.1 GI:115434631 GeneID:4324088

Length

4763 bp

Definition

Oryza sativa Japonica Group Os01g0158000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:3046432..3051194

Sequence Coding Region

3046504..3046582,3047265..3047487,3047954..3048107,3048253..3048355,3048554..3048738
,3048972..3049051,3049433..3049583,3050015..3050096,3050221..3050279
,3050379..3050684,3050825..3050989

Expression

GEO Profiles:Os01g0158000

Genome Context

<gbrowseImage1> name=NC_008394:3046432..3051194 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:3046432..3051194 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggccgacgacagcgcctccccgtcgccgtcctcggcctcgccgctccagcaccaccgcgaagccctcaagtcgtcagtgcgcaacacggcagctagccggaggcgggaacaagctattgcgattgggaaggaaagacgggaagccttgatccgtgcaaagcgtgtgtgtcgagctccaatttctggcagtgatgaagctgaaatggaagagggtgatatggtggtcgatgaggagaaagcatgtcttgaggcaaagactgctcatgctgttgaagaattgaaatctgctttgtcaatccaggggaaaggcgttcagaagaagaagatagaggcgcttcgtgatttgagacgcttgttgtcacagcctgaagtacctctagttgatactgcaattaaagctggagcagtccctcttttagtgcaatatctatcctttggatcatcagatgagcagttgctagaggcagcttggtgccttacaaacatagcagctggggaaccagaagaaacaaaatccttgctgcctgctctaccattgcttattgctcaccttggtgaaaagagctccacacttgttgccgagcaatgtgcatgggccattggtaatgttgctggtgaaggagcagagctgagaagcacattacttgcacaaggtgctttgcggcctcttacccgtttaatgttctccagtaaaggttctacagcaagaactgctgcttgggctatgtcaaatctcatcaaggggcctgatccaaaggctgcaaatgagcttattaccattgatggcgtgctaaatgcaattatagcgagcttggaaaaggaggacgaagagttagcaactgaggtggcatgggttgtggtctatctttcagcactttcagacagaggtattagcttaatagtaagaagttctgtgcctcagctgctgataggacgactgttctcatctgagaacttgcagttgctgatcccagtgcttcgtggtttgggaaatcttattgccgctgatgactacatggttgattcagtcctaactgttggacacaatatcattgatcaagcattgtcaggtcttataaaatgtttgaagagtgataacagggttctcagaaaggagtcatcatgggcattgtcaaatatagcagcaggcagttttgagcacaagaaactgatttttgccagtgaggccacgcctgtgctgatacgccttgtcaccagcatgcaatttgatattcgcagggaagcagcatacaccctaggaaatctgtgtgttgtccctactggaaattgcgaactcccaaagataatcgtggaacatctagtcgctatcgtagatggtggagcccttccaggatttatacacttggtcaggtctgctgatgtagataccgcagggcttggtcttcagttcctagaactggtgatgagggggtatcccaataagcaaggcccaaagcttgtggaaatggaggacggcattgaggccatggagaggtttcaattccacgagaacgagcagatgaggaacatggccaatggtttggtcgacgaatacttcggtgaggattatggcctcgacgagtga</cdnaseq>

Protein Sequence

<aaseq>MADDSASPSPSSASPLQHHREALKSSVRNTAASRRREQAIAIGK ERREALIRAKRVCRAPISGSDEAEMEEGDMVVDEEKACLEAKTAHAVEELKSALSIQG KGVQKKKIEALRDLRRLLSQPEVPLVDTAIKAGAVPLLVQYLSFGSSDEQLLEAAWCL TNIAAGEPEETKSLLPALPLLIAHLGEKSSTLVAEQCAWAIGNVAGEGAELRSTLLAQ GALRPLTRLMFSSKGSTARTAAWAMSNLIKGPDPKAANELITIDGVLNAIIASLEKED EELATEVAWVVVYLSALSDRGISLIVRSSVPQLLIGRLFSSENLQLLIPVLRGLGNLI AADDYMVDSVLTVGHNIIDQALSGLIKCLKSDNRVLRKESSWALSNIAAGSFEHKKLI FASEATPVLIRLVTSMQFDIRREAAYTLGNLCVVPTGNCELPKIIVEHLVAIVDGGAL PGFIHLVRSADVDTAGLGLQFLELVMRGYPNKQGPKLVEMEDGIEAMERFQFHENEQM RNMANGLVDEYFGEDYGLDE</aaseq>

Gene Sequence

<dnaseqindica>73..151#834..1056#1523..1676#1822..1924#2123..2307#2541..2620#3002..3152#3584..3665#3790..3848#3948..4253#4394..4558#tcgtttactcctccgtcgatttccactttcgccaaacctcgcggccgtcgagctccgccgccggagaaaaagatggccgacgacagcgcctccccgtcgccgtcctcggcctcgccgctccagcaccaccgcgaagccctcaagtcgtcaggtccgcgctctccacccagtacctcttccagtttcctcttctcgcccgtccgcggccgctctggaatttcgtagaacatttggcgcgcgcggccgcctgctgctgctggaggctggagcccgagccgccccctttgagtgcgcgtgtgagtttcttcgagtgaaattgctcttgccttcctggaggagagagccgctcagactcttctccggtcaggtttgagtagttgctaggttggaccaacgaggggttaaaagcttaaaattaaggtcaacagtaggtcgatattatcttatacttctagatcgaatcatatgagtgactgttcttatgtggttggaaatctagctggttagcatggcttagccaacaatttggcatgcactggactgtgtctgacttgctgaaacttaggtgctgcgattgacctgtttttaagtttaaaagtgcacttcttctgtgattttaaagaatttaatctgatgtcaggaataaacatcccatagtcggttaattctgtgtcccctagccctactgaactaatctcatgtgaaactgcaacgggtgaaaaagacaaaatacagaataagcataatgcattttggttcatcatattcatagaaagctttgtgctagagcactagttattataacctttagttggttgggtttctggttgtagtgcgcaacacggcagctagccggaggcgggaacaagctattgcgattgggaaggaaagacgggaagccttgatccgtgcaaagcgtgtgtgtcgagctccaatttctggcagtgatgaagctgaaatggaagagggtgatatggtggtcgatgaggagaaagcatgtcttgaggcaaagactgctcatgctgttgaagaattgaaatctgctttgtcaatccagtatggaaccggcatattttttatgtattaatataaacatctgtccgtacattcttaatttaaatattgctgacttgcctctttttttcctaataaaaatacctagttatgtaattaattaggagtatttggtttataatttttctgtcatgtattccttttacagatgataaaaaaatattctataattctgttatggtgcatgtgctgagtaattttcattatgttttacacctcacattctaccaacatttcaaaaccctatgctgctaacatgaaccaaatgcccccctctgctgtcagatattctatttattcacttgtcttttaaaagtatgttgctgaaggtttggtttgaacacttataagttccaacttaaaactatgaaaatgtgcaagcatgtaccgaaagtactctggttctgaagtgtaatatataaccatcagtacatatcgttgctcttagggggaaaggcgttcagaagaagaagatagaggcgcttcgtgatttgagacgcttgttgtcacagcctgaagtacctctagttgatactgcaattaaagctggagcagtccctcttttagtgcaatatctatcctttggatcatcagatgagcaggttgatcatgctgcactaattgtttcgaagctatatcttcattaaatattataaagctgagttgaatgtgttcagcattataattctatatcttttgttatttgaagtttgtctcttatcaggaccattcatgattttaatgcagttgctagaggcagcttggtgccttacaaacatagcagctggggaaccagaagaaacaaaatccttgctgcctgctctaccattgcttattgctcaccttggtggttagtttcatctctcttgttggttgaaattaaataattttcttcaatgctcatcttcattcccattaggaagatattgctatatgttcctgtatgcgtttctcaagaatgatgtttgtagatatttttctactatttagtttgaaatcagagctttgactatgctaaaaatttaattgagctacctatgttggttagaaaagagctccacacttgttgccgagcaatgtgcatgggccattggtaatgttgctggtgaaggagcagagctgagaagcacattacttgcacaaggtgctttgcggcctcttacccgtttaatgttctccagtaaaggttctacagcaagaactgctgcttgggctatgtcaaatctcatcaaggttgtactgataaactctctcttaattttctaagctatcgttgtaggcaagcacaaactacatacacgtgctctctgaaccgtgctattttctaagctatcattgttagttttagcattcttttgttatagaaaaccttaagccatgttccaaaacataattggcttgtaatacatgcttatctatttgcagagcatcatttcactaacccatttgtttctcttgtaatctaggggcctgatccaaaggctgcaaatgagcttattaccattgatggcgtgctaaatgcaattatagcgagcttggaaaaggagtatgtctctttattgacatccttttattttgcattgaactttgtattgctttatgttcactatatgggagtattgcaattggaataattctttcctgtcaatcttattagttataattctgtgctatgttgtatttgttgggtacttggtactatttccttttccggtgttctttccatcagttataattatgtggtatgttgtatttgttgggggtacttggtactatctccttatgtagttgatatagtcttgtttaatgtttgaggtattcgataaaagttttcaatggcatagataatgaattaaccaaaccattattgaactagcgtggacctttttaatcattactattattgagtaacttttggacttatcagggacgaagagttagcaactgaggtggcatgggttgtggtctatctttcagcactttcagacagaggtattagcttaatagtaagaagttctgtgcctcagctgctgataggacgactgttctcatctgagaacttgcagttgctgatcccagtatggtccatttatctctacctcatagtgtttcttccttttgcttattcacacttttgatactttcctttaaattaattgaatacctattagttgagccctatttattgtagtttattaatgcccaccaaactgactatgtctcaaaagagaaatctctttgttcaaaactataacttctggtggctaatgtgacaagtaatatgcaatcagtccatgtctcattcggaggaatctgtttattaatttactgtttatattgaataaaggtggtgatagtgatttaccatttttgtgtagttactcactcataaggatatacagtatatacttttactcccattcattagggttctgcaattactgcaaatgtgtatactgaatgtggatttcacattgcaatcactttgatacttctactttaaatttaggtgcttcgtggtttgggaaatcttattgccgctgatgactacatggttgattcagtcctaactgttggacacaatatcattggtaaactccatgacccttttcctaccatatctgtttacaatgtttattcatcagttaacagttccttgtctttctggaaaatatatcttgcaaattgcaagcactaactaaatgttgttattagatcaagcattgtcaggtcttataaaatgtttgaagagtgataacagggttctcagaaaggtctgctttccattgctggttcaactttacttggttatactcggagaactcctgtgattatttgatttaccctatgaaatttgctgactgcttatgtaggagtcatcatgggcattgtcaaatatagcagcaggcagttttgagcacaagaaactgatttttgccagtgaggccacgcctgtgctgatacgccttgtcaccagcatgcaatttgatattcgcagggaagcagcatacaccctaggaaatctgtgtgttgtccctactggaaattgcgaactcccaaagataatcgtggaacatctagtcgctatcgtagatggtggagcccttccaggatttatacacttggtcaggtctgctgatgtagataccgcagggcttggtcttcagttcctagaactggtgaggaaatctttaccatattagctatctctgtttcattcctccaacggtattcacctcacaagcagagttgctgaacatgttctgtttctttcttggatacatttggatctcactggaaattgaatacatttttgcaggtgatgagggggtatcccaataagcaaggcccaaagcttgtggaaatggaggacggcattgaggccatggagaggtttcaattccacgagaacgagcagatgaggaacatggccaatggtttggtcgacgaatacttcggtgaggattatggcctcgacgagtgactcaactaattaccattcgtacatcaggttaaattgtaatggcagcagctgttcatgtgttcgtactgtaaaaatgcattctcagtttctaacagcactggaactttagaatgagaaaatcatttgcttgttactgttcgtcttactgccacttgttgacgtaatttggaaagaaaaaaaaggttgcattagcatcttgttatgt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0158000, RefSeq:Os01g0158000