Os01g0159300

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Revision as of 04:22, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0159300| Description = Zinc finger, RING-type domain containing protein| Version = NM_001048618.1 GI:115434649 GeneID:4324061| Length = 493...")
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Gene Name

Os01g0159300

Description

Zinc finger, RING-type domain containing protein

Version

NM_001048618.1 GI:115434649 GeneID:4324061

Length

4933 bp

Definition

Oryza sativa Japonica Group Os01g0159300, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:3099294..3104226

Sequence Coding Region

3099509..3099634,3099758..3099904,3099991..3100089,3100171..3100577,3100958..3101599
,3101683..3101767

Expression

GEO Profiles:Os01g0159300

Genome Context

<gbrowseImage1> name=NC_008394:3099294..3104226 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:3099294..3104226 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctagacaccatggaaaccattccctactgccagagatggttcaacccaataatgagcaactcaaccaacctctgcctttaggtcagaagttatttgtgcatgctggaaatgatgcagcccttaaaattggcccttcataccatgggaatgtggcaattagatcgaatgatcttccatcttcaagtcgagtggcacaatattcaggtcatagagttaaaaacacaggaaccttacataactcctatgttcactatcctgctggaagctctggtggccatgtatcctacaatcctcaaactgaacctgttataacttatccacatagatctgagggagaatttgctcgagggagttcccaaatcgacaacagaactgctgcagtgaaacgaaaaaatcctgtcatttatccagagtatagcatcaatggtgatggttattgtgccggtagctcatcaagtacccagttctctaattatccacagccagctccattttctgagtccttgcatcgtcaaatgcctccaagtgttggcccaattaattggaatgaccagagcttggtaaatcaagaaggaagtcagagaaatgtgagggcacgtcataattttaataatatttcattggaacctagaccagtccattctacttcgaatgtttcccaaagtacatcaatgaaaaggaatggaccatccttttctacgcgaatgagaactatgccttcaggtgcctctggaatgcactctggagaaatgccttacactatgggaagcagcaactcatctgttcctgtcccaactttacaaggctcttcaagcagtgcaatatttgccagtggtgtctttgcacctaggcatgttcatggtgacactgttcctagctacattcatctgccttctgtagcatcctctagctctacagcgattccccatgaggtgatcattccgagctaccaacctgctacctctgcaactacctcaacacccatgagggccagtcagccattacctgtcagagctgttgcatcttctagacatgcaaggaatgtactcatagggcatgctaacagcggaaggaacagaagggcgagaagctcatactatggtattcagcctttgatgattgatgcacagcaattgataatgatgcaacaatttgctctccgcgaatcaagagaagcacaagacccccacagggccatgagactggacattgacaatatgagttatgaggacctgctggctttgggagaatctattggtaatgtctgcacaggcttggtggacgagaaaatctcaggttgtgtgagagaagtgatctattgcagttctgatgaacagcaaaatgatcaagatgatgggaaatgtgcaatttgtctggaggaatacaaagacaacagtttgctgggaatactgaaatgcaatcacgacttccacaccgactgcgtcaagaagtggttgaaggagaagaactcatgcccaatttgcaagtcggctgctgcatag</cdnaseq>

Protein Sequence

<aaseq>MARHHGNHSLLPEMVQPNNEQLNQPLPLGQKLFVHAGNDAALKI GPSYHGNVAIRSNDLPSSSRVAQYSGHRVKNTGTLHNSYVHYPAGSSGGHVSYNPQTE PVITYPHRSEGEFARGSSQIDNRTAAVKRKNPVIYPEYSINGDGYCAGSSSSTQFSNY PQPAPFSESLHRQMPPSVGPINWNDQSLVNQEGSQRNVRARHNFNNISLEPRPVHSTS NVSQSTSMKRNGPSFSTRMRTMPSGASGMHSGEMPYTMGSSNSSVPVPTLQGSSSSAI FASGVFAPRHVHGDTVPSYIHLPSVASSSSTAIPHEVIIPSYQPATSATTSTPMRASQ PLPVRAVASSRHARNVLIGHANSGRNRRARSSYYGIQPLMIDAQQLIMMQQFALRESR EAQDPHRAMRLDIDNMSYEDLLALGESIGNVCTGLVDEKISGCVREVIYCSSDEQQND QDDGKCAICLEEYKDNSLLGILKCNHDFHTDCVKKWLKEKNSCPICKSAAA</aaseq>

Gene Sequence

<dnaseqindica>4593..4718#4323..4469#4138..4236#3650..4056#2628..3269#2460..2544#tactccacaccgcacagacaaatactctacgagagagagagagagagagaattttaattttaggagaaaactgtggccgcgtgcgtcgcgtctcctcctatcttctccccgaagcttccgtatcgcgggcgcctccttcctttccccctctatctatctactcccttggaaatttattcggtcgcgtggggtttggatcggtggatcgatcgatcgatcgagcgagcgaacgacgacttgtgagcaggtacgcccctccgatccgctgcgattttgagtttttgaccacggtatcttaggatcggctgcttgttgttgggtgagatttttttggtgtgggaaaatcaggtgcgtgtggttgtggttgtggttgttgatgctttcggcggctcggctttgttatgtagaaaaaaaaatcagcggttgcgatttagatactttcggctctgttatggtgttgatacgtggttgttgatcgattttggagtttggcgtggtaggattgattttagtagggtggatttggttaggactttgtagtttgtactatcatgatgtggcgagtcctcatcgattctgcatcagccaaagtacatatggttggaaatttataataattatccaacatttctgaagacgaaaatcaagtaggtggattcagtcataatttaataatgaatagtgagaatatagattaacatttttttatttttcatatattttttctagacattaggctgtatattattgcctgccggtttaccaattactgttctgtatgatatatgagggaggaggaatatgtggtagatttgattaacttgtaatatggggaaatagaagagccttacaatttacatttgtaatgtgcataggagagcctttttagtgtgaaatctagatggatgatttataatgtgcataggagagcctttttagtgtgaaatctagatggatgatttatgcttccgttctagttggttggtggtggtgcagattttattttttgctttactatagagaaaatttatgccatcaaatatattcattggttttgtctgaagtgttgatttagtggatgagcattagtacccactcctggatttttttttgggtgattgattttatcgttaggagaaatctttaaaagtctaagtacaaacagttcaaaccagactggttgaatcctgatgttagtctagcattaggggaaaaaagattcttagtaatgtaggaaatctttagtctgtctccaatttgcatatctaggatgctagttattctttgaaacaaatgtagctgatttagagatgtggtcgctttgtccggaaagataaggtgcaaatgcttttgccaaaagatctagaaatgccatatgcaattatccatggcatctatttcatgaacatatcttcatccagttaaaagatgagatttgcacctgcattcatgaaattctgctgctcttcaaagctcataccacttggcttcacattatttatactccgatgcatctccattattccttgttatgtataaaatctgcttccatgatatttttttggcaatgatgtctgcttcgtttataaatttttgtactacaaatgttggcaaaaaaatctgtagacctgtagcataggaaggaacaatatgatataagatgtggttatcagtccccatttaatctttcggtttgttattcatgcgttcacaataaaaccttttggtgttttgaataccgctcttccatcctcccatttaatctttctggaaattaaatacttataaaaaattatgtaaggtaagtgctgcaatattgtattagacttacatgttactgacaaatgatattgtacatttagaacaaggtagaaatgagcatttatttttgtgtctatctgcctcctacatgtttttactgcctgtcgtgctaaatgttaagaaaaatatatctttagggaaaaataagggagaagacattaaattagttttgtttctgacttttcttgaaccacaataacttttttaactcctagtgttgggaactaattagtgaacagggtgcataatggcatatttagttgccacaccatctggattttatcaaatatacatgtcaaatacatacatggagatcgttacatgtgataggcaccattggcttttcaaacaaacttattgacaaagttctgtattcatgtacttctatgttgttctagcacattttgttgtatatcattgtgcctattcaaactccagtatttttgcttcatgctccttacgccagtgaataattgactaaatgttgtggtatttgaattgtaacaatcagcagcgcagcatgttccacgagctaatgcatcatttcattacaatcttcaatgttgtgctacacttaattaacgatgttcggtttgtgattaccaggttaaggacaggcatactggactgactgttttatggctagacaccatggaaaccattccctactgccagagatggttcaacccaataatgagcaactcaaccaacctctgcctttaggtagcttggcttcattattatctattgtattgtacatgtctgaattgtgattaaaattgtgtcctattttgttttaatctcaggtcagaagttatttgtgcatgctggaaatgatgcagcccttaaaattggcccttcataccatgggaatgtggcaattagatcgaatgatcttccatcttcaagtcgagtggcacaatattcaggtcatagagttaaaaacacaggaaccttacataactcctatgttcactatcctgctggaagctctggtggccatgtatcctacaatcctcaaactgaacctgttataacttatccacatagatctgagggagaatttgctcgagggagttcccaaatcgacaacagaactgctgcagtgaaacgaaaaaatcctgtcatttatccagagtatagcatcaatggtgatggttattgtgccggtagctcatcaagtacccagttctctaattatccacagccagctccattttctgagtccttgcatcgtcaaatgcctccaagtgttggcccaattaattggaatgaccagagcttggtaaatcaagaaggaagtcagagaaatgtgagggcacgtcataattttaataatatttcattggaacctagaccagtccattctacttcgaatgtttcccaaagtacatcaatgaaaaggaatggaccatccttttctacgcgaatgagaactatgccttcaggttagtagtttgctgcttagttaaatttgctacatgtgcgacccttatttttgtaaagtgttctttgccagtgttttatttcttatgacaagatatgaagagacatcactgtgttgcttcaacaatttacatcttatgaattatttggttcatatagtaaatggtggaacagaacccaaggcatcttagttttgttgtggttgcgttttatgacatggtatattagtcatagagtataatacttacagctgctttttacgtgaatgtggattattagtccctaatttccttattgatatatagtatttatatagcaagttggattttttaagtttatcgttgtttgctctcacagcacatgtatttaaatgattatgtaggtgcctctggaatgcactctggagaaatgccttacactatgggaagcagcaactcatctgttcctgtcccaactttacaaggctcttcaagcagtgcaatatttgccagtggtgtctttgcacctaggcatgttcatggtgacactgttcctagctacattcatctgccttctgtagcatcctctagctctacagcgattccccatgaggtgatcattccgagctaccaacctgctacctctgcaactacctcaacacccatgagggccagtcagccattacctgtcagagctgttgcatcttctagacatgcaaggaatgtactcatagggcatgctaacagcggaaggaacagaagggcgagaagctcatactatggtattcagcctttgatgattgatgcacaggtagattcttctccattcctactgtaatcaatatatatttgaattttaattatgaactgaaacaagatgttgtttctgaagcaattgataatgatgcaacaatttgctctccgcgaatcaagagaagcacaagacccccacagggccatgagactggacattgacaatatgagttatgaggtagaagagctggtttttgcttacatgcctcccaccctggaaacttgaaaatctattttcttaactctatcatttgctgtcaacaggacctgctggctttgggagaatctattggtaatgtctgcacaggcttggtggacgagaaaatctcaggttgtgtgagagaagtgatctattgcagttctgatgaacagcaaaatgatcaagatgatgggaaatgtgcaatttgtctggtacaattttaactgcttggtttattagttccagtttcatgtcgaacaattcgttaccctgtcttgaaaaaacttttaggtatttctgactgattatcgatgggttgttggccttttgtgcaggaggaatacaaagacaacagtttgctgggaatactgaaatgcaatcacgacttccacaccgactgcgtcaagaagtggttgaaggagaagaactcatgcccaatttgcaagtcggctgctgcataggacacgcgaggacaaacaacaatatggtcctcaaatttgttagtatttagacccaattaagttgtttcattctttgtgcgcctcagccatgtaaataagtaagtttgctaacattaaattattttgtgtgttaccatagctgatatccttttatatgtattaactattaaaatgccaatttttaattcatttaatcatatgaagtggtttacatt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0159300, RefSeq:Os01g0159300