Os01g0159400

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Revision as of 04:22, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0159400| Description = Similar to Acyl-coenzyme A oxidase 4, peroxisomal (EC 1.3.3.6) (AOX 4) (Short- chain acyl-CoA oxidase) (SAOX) (AtCX4) ...")
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Gene Name

Os01g0159400

Description

Similar to Acyl-coenzyme A oxidase 4, peroxisomal (EC 1.3.3.6) (AOX 4) (Short- chain acyl-CoA oxidase) (SAOX) (AtCX4) (G6p) (AtG6)

Version

NM_001048619.1 GI:115434651 GeneID:4324062

Length

5824 bp

Definition

Oryza sativa Japonica Group Os01g0159400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:3107117..3112940

Sequence Coding Region

3107668..3107796,3107879..3107971,3108082..3108253,3108341..3108417,3108514..3108673
,3108766..3108875,3109384..3109443,3109545..3109618,3109748..3109871
,3110795..3110872,3111169..3111275,3112572..3112673,3112800..3112815

Expression

GEO Profiles:Os01g0159400

Genome Context

<gbrowseImage1> name=NC_008394:3107117..3112940 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:3107117..3112940 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggggaagcaaggagatgggcgcgaggaggatggcgctaaggtcggcctcccggcgctggatatctcgctcgcgtttccgcaggccacgccggcatccatcttcccgccatcagcatcggactattatcagattgatgatttactcaccactgaagagcagtctatcaggaagaatgtcagggctataatggagaaagaaattgcacccattatggcaacgtactgggagaaagcagagttcccatttcatgccattcctaaactttcaagcctcggtgtagctggaggcacaataaagggatatgggtgcccaggactttcaataacagcaagtgctattactatggcagaaattgcacgggtagatgcaagctgctccacgttcattctagtacactcctcccttgcaatggtcacaatagctctttgtggatctgaggttcagaagcagaagtacttgccatcccttgctcaacttactgctgttggttgctgggcattgacagaaccaaatcatggaagcgatgcaagctctttgataactacagcaaccaaggtacctggtgggtggcacatagatggacaaaaacgctggattggtaacagtacttttgctgatgtgctcgtggtattagctaggaatgccaatacaaaacaactaaatggatttattgtgaggaagggtgctcctggcttgaaagctacaaagattgagaacaaaattggtctcagaatggttcagaacggtgatatagtttttaataaagtatttgtccctgaggaagatcgactgccaggtgtcaattcatttcaggatataagcaaggtccttgctatttcacgtgtcatggtggcatggcaaccgattggtatatcaatgggggtgtttgatgtctgccatcggtatctgaaagaaaggaaacagtttggagttcctctagtagcttttcagctgaaccaagaaaaacttgtgcgaatgcttggtaacatccaagcgatgcttcttgttggctggcgactatgcaagctttatgagtcagggaaaatgacaccagggcatgctagtttagggaagggttggacttccagaatggctcgtgaggtggtttctctcggtcgagaattgttgggtggaaatggaattttggctgattttctagttgcaaaggcattctgtgacctggagcctatatactcatacgaaggcacatacgacatcaacagcctggtgactggtagagaaataactgggatcgcaagcttcaaacctgccgcattagcaaaagctcggttataa</cdnaseq>

Protein Sequence

<aaseq>MAGKQGDGREEDGAKVGLPALDISLAFPQATPASIFPPSASDYY QIDDLLTTEEQSIRKNVRAIMEKEIAPIMATYWEKAEFPFHAIPKLSSLGVAGGTIKG YGCPGLSITASAITMAEIARVDASCSTFILVHSSLAMVTIALCGSEVQKQKYLPSLAQ LTAVGCWALTEPNHGSDASSLITTATKVPGGWHIDGQKRWIGNSTFADVLVVLARNAN TKQLNGFIVRKGAPGLKATKIENKIGLRMVQNGDIVFNKVFVPEEDRLPGVNSFQDIS KVLAISRVMVAWQPIGISMGVFDVCHRYLKERKQFGVPLVAFQLNQEKLVRMLGNIQA MLLVGWRLCKLYESGKMTPGHASLGKGWTSRMAREVVSLGRELLGGNGILADFLVAKA FCDLEPIYSYEGTYDINSLVTGREITGIASFKPAALAKARL</aaseq>

Gene Sequence

<dnaseqindica>5145..5273#4970..5062#4688..4859#4524..4600#4268..4427#4066..4175#3498..3557#3323..3396#3070..3193#2069..2146#1666..1772#268..369#126..141#actactactactcctctttcccactcctctcgcttccttcctcctcctcccctgcttcgccgccgcgtgctcctccgccgccgccggagaagctccaagcctcctcctcctccgggccgccgggaatggcggggaagcaaggtgtgggggtggcgcttctcctcccgtggtttgggaacggctcgattttggtgcggcgttttgggtgggtgattcgatcgattcgacgcatttaattggtttgttggttggttggttggtctccaggagatgggcgcgaggaggatggcgctaaggtcggcctcccggcgctggatatctcgctcgcgtttccgcaggccacgccggcatccatcttcccgccatcaggtgaggaaaaacaaaattgagttcatccatccctttggtgcgtgttgaattgttgatccatgaatgaagcgagatggggaggatcgatttttcggtcaacatgctgataagatgtttactagtcggattacttactgttactggagattagctggttttgtgctgcgagatgggaaaattgtgatgatctgaccgtagccttgcctggttatcctgttgaattgcttggccataattgtccgctcctatcattgttttgttttagtagtttcagtaccttcagtactattcggaggttttgttgcgcgcgtcacttgacttcaattattaggtacggtcattaggccatgtaggagtcatgcgtgccgctttattttcaacttaatgcagctgctgtcgaacttcgctcgatagttctagaatagtagagtttgatatttcctcgattcgtcttttattagcctataaaaggctaaaacaatgatgtcaaaacttttctttgcgtcaaaaaaatgtcaaaactttctaaagtcttatcgtaaatcaggaaatcccaaaacaatattaatctactagatgtgtcagtcaaaacacttacaatattataattatattactttatatattaataggttacgcaaaatggttcaagttggttctttcagacaccccccccccccaaaaaaaaaagtcaataacatcacatggagagaagtgaagttttttctaacatcaaagataaatgttcgtgtggtccctgcgattaagaaatattggggtgtactacaatttatttgttaatgatgcgagaacctatttccagaagcatataaagtctgcatgatgtagaaatattctgtttaagacattctcattgattggagccttggatgggttgctttggcatccaaaaatgcacaaacggaactgtattatcacgttcttttgatatccaacatatctcttatttaattcttagaccttagtagtatgttgatcatttctttttgtcttccaacatatcaggctgtttttccccgcaaaaaaaaaaacatatcaggctgttcttatttgacatttataatgctttatattcatgtgttcttgcttctcgatctgttgctgcttcattttcaggattgggctattcaacccttggtttttgctttaggaatgctaacttagatataggatcctaggttcagtgttctcagttaatttgtagtgtaccaattagaaggtacttggtgggtgttgcatacggttttatctgagtatatacaccttcatttgcagcatcggactattatcagattgatgatttactcaccactgaagagcagtctatcaggaagaatgtcagggctataatggagaaagaaattgcacccattatggcaacggtatgtcaattccgaaacaagtatgtttctggcattattgcatccttgaagtttttgcctatcatgtaaaccacagtaaacttgacctcctttatggaatcttatattatattttaagttttacctagcaatatattgctcataacaaaactttttcagaaacctgtaagagcgcagaagcactaatctactataatttgattaactagataatatgcccttgacaaactttattggtcatataataacctgcctttagaagatgacataaccatttcgtaaatttgctactgcagtactgggagaaagcagagttcccatttcatgccattcctaaactttcaagcctcggtgtagctggaggcacaataaaggtaacaatttctctatgatgcagttatcttttagatcagtcaaattaagttcagcagtatttgtgcatcacgttcctattcaatctgttccacgaaaagaatggagaatttacgtaagggatttttttagacaatctactcgagattttcttcagtactcttgctaagataagcttcttgttttcaaagaagaattaatagtaaagattgtgacattcaattgccttttcgcatgagttgccgagtaggtagtatttgtggatcaaaccctataagcttaaagccattgtttttgtcatctagataaatctcaaatcaaagtgtttctttgaacttgaaggttgatcaggttgctcttattttctacttcctccgttttacaatgtaagactttctagcattgcccacattcatatagatgttaatgaatctaggcatatattatatgaaatatgggtaatgctagaaagtcttacagtatgaaacggagggagtatctacataaagaaatcaagccaaattcttagtcactctttataattgaatctgtagcatacagcgagtaatatagcaagtcagaataggatacttgtacctttaggtgcaatgtattcaagagattggcacccttgctgaattgaaattggccacctgcaacattgatgttgttagagtttggattggtttgtgcaattattgcatgcattatgcacaaatggtgtttgtgtctatgatgctctcatatggatttggggggatgggaacagagatgtaatagaccagtgagtcaagaaggtctgtatttaagtacaaattttgccagagtgctgaagcttacccagatatatgattgtctttacatttcttatgattttcaatgctccagattttctcaacttcattgtgtgtgtgccttactacagggatatgggtgcccaggactttcaataacagcaagtgctattactatggcagaaattgcacgggtagatgcaagctgctccacgttcattctagtacactcctcccttgcaatggtcacaataggtaaaacatctacgattttttaattgatactatctcatataatctaatttgaaactttgccaaagttggttgtgctactactgaaccatgcttttgctcttctctgttttttttttttctgaagaacagctctttgtggatctgaggttcagaagcagaagtacttgccatcccttgctcaacttactgctgttggttgctgggtacgtggaaaattgtctaatattcactttgattgtaagcaactcgtacaaatgagtaaatggcgcatagtatccacctaaaatatatttcctttctgtaggcattgacagaaccaaatcatggaagcgatgcaagctctttgataactacagcaaccaaggttcagcacttgaggatttgaagcattatatgttttttactaaataaaaaatctcaaatattttttgtccaattctatatacatgtcttgcagcaggggagcagcaatgcatggtatctcatagtccatagcaccctaatatttttttgttccttccagttttattaggatttaattttttttgttgaactcttttggtttccagctttgtagtaacataagtggagagcaagatagatactgtaacaaagttgctttgttgcaactgaaacccaaagcctgcttttatctgctgcttccatgcataaatcagattagatatcttgcctccccgctgagtacctattccacctccacatttggataatatatcatgctacctcattgtcatactgtgcagatctaaaattgagtattcttggtacattttttggatgtatgaacctttgatgggcaagcaaataagtaattgtgcttagcataaattttgtggcttatcatgaaacaggtacctggtgggtggcacatagatggacaaaaacgctggattggtaacagtacttttgctgatgtgctcgtggtattagctaggaatgccaatacaaaacaactaaatgggtaaaccatcagctttagattcgatctttggaattgaagcataaatgactcagctagtgttgctatctaataattcatttggctccttgtagatttattgtgaggaagggtgctcctggcttgaaagctacaaagattgagaacaaaattggtctcagaatggttcagaacggtgatatagtttttaataaagtatttgtccctgaggaagatcgactgccaggtgtcaattcatttcaggatataagcaaggtattgatatttcatagcattttcgcttatactgatacattaacatgttgcatagagtaatccagtcctggtaccaacttttgagtgcccaaacaggtccttgctatttcacgtgtcatggtggcatggcaaccgattggtatatcaatgggggtgtttgatgtctgccatcggtatggaccagttcaccattttttggttatttatatgccacatcatatgcattttcacactcttcttttttgcacgaattgaaataggtatctgaaagaaaggaaacagtttggagttcctctagtagcttttcagctgaaccaagaaaaacttgtgcgaatgcttggtaacatccaagcgatgcttcttgttggctggcgactatgcaagctttatgagtcagggaaaatgacaccagggcatgctagtttagggaaggtttgtgaaatactagctggcaaaggctgcctttcttcctctgtaactagaactttgtgttcctttgatatatcagtgattttaacttttgattcctcgctcccatttagggttggacttccagaatggctcgtgaggtggtttctctcggtcgagaattgttgggtggaaatggaattttggctgattttctagttgcaaaggtagatagacctcatgtaggatattgagatattcatatgccatcattcaatacttaattaatgatttttattatctccgtaggcattctgtgacctggagcctatatactcatacgaaggcacatacgacatcaacagcctggtgactggtagagaaataactgggatcgcaagcttcaaacctgccgcattagcaaaagctcggttataaccatcattttccgaagaggataaagctacagctcactgcaatttcttctcagattgctactacaggaagcaaataaaaatcaggtccccatgcaccgattattggccggctaatgcagcatgatgcagaccaaatagactccttggaaaattctctggtcaatcttggctggctagaaggctgtgccgtgcgagaggatatctaacgtatccgaatcacctcgttggaatcgtgtccggtggtggaggacagcatgaataaaagctccgtcctgtatgccaagtcttggcatttaactgttgtatacatttgtgaacgctgtaaaatctgaataaaggtcaagaacagtagtgtcgaattttacctctttcaaacctacactgcctgttcttgttttggtttgtttcaagcatgggtccagagaataattgtcctttctcgattgtttgccttactctgtcagtaaattttctgactttagacaggaaacttctgtatatctagcatgcgcactgctacacgtgcttaaaagattcaagacaacttttacg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0159400, RefSeq:Os01g0159400