Os01g0166100

From RiceWiki
Revision as of 04:23, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0166100| Description = Similar to Ca(2+)-dependent nuclease| Version = NM_001048647.1 GI:115434707 GeneID:4327139| Length = 3047 bp| Defin...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os01g0166100

Description

Similar to Ca(2+)-dependent nuclease

Version

NM_001048647.1 GI:115434707 GeneID:4327139

Length

3047 bp

Definition

Oryza sativa Japonica Group Os01g0166100, complete gene.

Source

Oryza sativa Japonica Group 

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:3396441..3399487

Sequence Coding Region

3396508..3396636,3396752..3396807,3397451..3397565,3397671..3397787,3397908..3398095
,3398198..3398257,3398365..3398524,3398903..3398971,3399085..3399186

Expression

GEO Profiles:Os01g0166100

Genome Context

<gbrowseImage1> name=NC_008394:3396441..3399487 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:3396441..3399487 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggaacagcatatacaggttcctgtgcggcctctgctcgccgtcgccggagtaccagccgcacggcgcgcaccccgccgtcgcggcgctcggccgggacatccagcagttcgaggccacctcgcaggttccggatgggctgagccggcatgtagtctcctccaagaaagcgcaggctaattggtacaagaagctgatagtgacatggaagaaagccaggccgacgccgaggacgccggaggaagccgcgcggctcgtcgtcaccacgctgaagaatcatcagaaagcagacgtcgagggattcttggttttctatggccttccaattccaaatgcagcagcaagtacccctgcgcctcacactgcacacgtcccaaaacctcaaggttgcaagtttgagctgcacactctcccggtcgatgcaaaggccgtggccgacggcgacacgatcaccgtgtacattgacacggccgatcctcgggagtccggcaatgttccccgtgaaattcagaaagcggcggcggaacggacaagggcgcgcgcggccagggattatcagaaggccgacgggttgcagaagatgatagctgatgcaggatataggcaagttcctaatgcgagaggcgaggaagtgctcgcaaagaagtacaggatcaggctaagggggattgatgcgccggagagcgccatgccgtacggcaaggaggcaaaagaggcgcttctgaaaatggtgcagggaaagagcctgaaggtctatgtgtatgatgaggaccggtatggtagatgcgtcggagatatctactgcgatggggtgtttgtgcaggagcaaatgttgaagaaaggatgtgcatggcactatactgcctatgaccaacgaccagagctggccaagtgggagaaacaggcgcaatctggcaggaagggcttgtgggcggcgtcaaggccacagaagccatgggaatggaggagggacaagcgcaatggtacagcatga</cdnaseq>

Protein Sequence

<aaseq>MGNSIYRFLCGLCSPSPEYQPHGAHPAVAALGRDIQQFEATSQV PDGLSRHVVSSKKAQANWYKKLIVTWKKARPTPRTPEEAARLVVTTLKNHQKADVEGF LVFYGLPIPNAAASTPAPHTAHVPKPQGCKFELHTLPVDAKAVADGDTITVYIDTADP RESGNVPREIQKAAAERTRARAARDYQKADGLQKMIADAGYRQVPNARGEEVLAKKYR IRLRGIDAPESAMPYGKEAKEALLKMVQGKSLKVYVYDEDRYGRCVGDIYCDGVFVQE QMLKKGCAWHYTAYDQRPELAKWEKQAQSGRKGLWAASRPQKPWEWRRDKRNGTA</aaseq>

Gene Sequence

<dnaseqindica>68..196#312..367#1011..1125#1231..1347#1468..1655#1758..1817#1925..2084#2463..2531#2645..2746#attcgcgcacggaaacccacagtcgattctccggtgagaggattgtttcggcggcgaggtcgggggcatggggaacagcatatacaggttcctgtgcggcctctgctcgccgtcgccggagtaccagccgcacggcgcgcaccccgccgtcgcggcgctcggccgggacatccagcagttcgaggccacctcgcaggtgagggcgtgaggctgaagctgatgaaattcgattttgcgatgcgtcggcgtcgtaaggtgatgggatttttttttcttggggggtttaatttggtttgttttgaatttttaaggttccggatgggctgagccggcatgtagtctcctccaagaaagcgcaggctaattggtgcgtaattcaattcctcctacttatgttttcttcctccttgtttcgagctggaaatggatcagagccgatgagctttgtcgtaatcgcgagggattgggcgtgtgaaaattttgaaagcgacgtgttcaagaggaaaataactcttcttttttttttgaaaaaacaaagttcatttctttcttttggaaaagagaatttcctttctttttcaagcaagaagaaacaaaatatatcattcgctgattttggtgacggaattgtggttcagtacgtcgaggggtatcgagagataactttactaaactgaaccgcaataattgagtgaagcttaatcaggcagtggagaattcggtaaattaaatcagtcataaatgcttgcagtaattgtcattagccagtaggcacggtaggatttcctcaaaccgctgccatgatactagcagggtttactaaatcgtttgggatcaggattatcgtcacctcatggtttagcggtaaccgtgtgtttaccgtgtttaccgtggttttaaaaactgaaaagattattagacgcgataaatcgcgtgataatcgcatgattttgtaagccctggacactagtagtctagtactactgtgataaaatttcctggtgctgtaggtacaagaagctgatagtgacatggaagaaagccaggccgacgccgaggacgccggaggaagccgcgcggctcgtcgtcaccacgctgaagaatcatcagaaagcagacgtcgaggtatatctcaaagattcaaacttccaatgtcatcatactcatattctaggcgcttgaattctgaaagtctgaacaatcgatgcatgcctgtttatgcttgtccagggattcttggttttctatggccttccaattccaaatgcagcagcaagtacccctgcgcctcacactgcacacgtcccaaaacctcaaggttgcaagtttgagctgcacactctcccggtgagactgattattactttctaatctctgaattttcctcgcaaaaaaaacaaatatcatctgaatttttcatgccaagaaaggctcttggactgacaagtgcacctgctagtttcttaggtcgatgcaaaggccgtggccgacggcgacacgatcaccgtgtacattgacacggccgatcctcgggagtccggcaatgttccccgtgaaattcagaaagcggcggcggaacggacaagggcgcgcgcggccagggattatcagaaggccgacgggttgcagaagatgatagctgatgcaggatataggtcatcagcttgcacttcacatcgatcaatcagttttttgttaaattttcagagatggttaatggttcaggctgtgtgacaattctgaagttttcaatgcaggcaagttcctaatgcgagaggcgaggaagtgctcgcaaagaagtacaggatcaggctaaggtctgtgtgctactatctcttgatcactcgatcaatgagcaaatgattctgccgtttttcttcttctcaagtttgaggtggtcgtatgaaatgaaatgaaaatgcagggggattgatgcgccggagagcgccatgccgtacggcaaggaggcaaaagaggcgcttctgaaaatggtgcagggaaagagcctgaaggtctatgtgtatgatgaggaccggtatggtagatgcgtcggagatatctactgcgatggggtgtttgtgcaggtaatcatgcagtgaaatcaatttcatcgttagaacacttttgttcttgttgaattgcaatggcacattgtgcaccaatgggagaagcttagaaagtactactgcgatagtttgcgccatgtgccatttcgcttgcagttgttatactgcagttttgtttaatggagtgttacttaggatcatgaaagttcaggtgtttaactggaatatgaaggaaagttaattcgttcttttaaaacttttgcttccgcgttctgcaaggaactgtgaaaatatttcatcacatgacacgtactgaaaaagtttatcttttcctgaagcctatctttcttccatacttacacaaggtacataatttgcctcttgctttctgaacaggagcaaatgttgaagaaaggatgtgcatggcactatactgcctatgaccaacgaccagagctggccaaggtacattgaaaccatacagctacacagatcacttgagtgaaaagcaccatgaacattcaggttgttctgtatcatatttctaaatgagagcctttgatttttcaatctatcagtgggagaaacaggcgcaatctggcaggaagggcttgtgggcggcgtcaaggccacagaagccatgggaatggaggagggacaagcgcaatggtacagcatgaacatgaaccatgaacaacagatgattgatttataatattagctctttcagacttgtagcccggagcaatatatgctttacaccacagtagaagtgtagatcgtgtagtgtgtacactagtacatcggcagaggggttgtcaaggaagaagagggcgttgattggtgtgtgtactataattgattaagtgcatatcgtgatttgtgtgttgtattgtatttgagaattgcattgttgtaaaactgaaactggtagaggatgtccaagtgaattcaatgttgttcaggaacttcataaagctg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0166100, RefSeq:Os01g0166100

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0166100&oldid=24788"