Os01g0178000

From RiceWiki
Revision as of 04:24, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0178000| Description = Aminotransferase, class I and II domain containing protein| Version = NM_001048723.1 GI:115434859 GeneID:4323866| Le...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os01g0178000

Description

Aminotransferase, class I and II domain containing protein

Version

NM_001048723.1 GI:115434859 GeneID:4323866

Length

5687 bp

Definition

Oryza sativa Japonica Group Os01g0178000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:4050885..4056571

Sequence Coding Region

4051257..4051709,4051967..4052075,4053194..4053252,4053339..4053445,4053711..4053867
,4054110..4054169,4055396..4055524,4056027..4056074,4056185..4056247

Expression

GEO Profiles:Os01g0178000

Genome Context

<gbrowseImage1> name=NC_008394:4050885..4056571 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:4050885..4056571 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggtagcttcgggaggctggcgaggagggccgtggagacggaagcgccggtcatggtcaagatgcaggaattgcttcgagggaacaaggatgtgatgtcgcttgcgcagggagttgtttattggcagcctcctgaggcagctatgaataagattaaagaaattgtatgggaaccatcaatcagtaaatatggctctgatgatggtcttcctgaactccgagaagcacttctcgagaagctgcgcagagagaataagctaaccaagtcgtcaattatggttacctctggtgcaaatcaggcctttgtaaatgtggtcctcaccctttgtgatgctggggatgcagttgtcatgtttgcaccatattacttcaattcctacatgtcattccagatgacaggagttactgacatattagttggtgcaagcaatcctgagactcttcatcctgatgtcgattggttggagaaggttctgcaagaaaacaaccctatccctaaacttgttagtgttgtaaatcctggaaacccctctggagctttcattccgaagccgatgctcgaaagaatttcagaactgtgcagaaatgctggtgcatggcttgtagttgacaatacctatgagtactttatgtatgatggaatggagcactattgcttagagggtaatcacattgtcaacctcttctcattctcgaaggcttacggaatgatgggctggcgtgtaggatacattgcccacccaaacgaagctgacggtcttcatgcacagctgctcaaagtgcaagataacatacctatctgtgcttccatcatcgggcagcgcctggcgctctacgcattagaggctggtccagaatggatcagagaaagggtgagagatctagtgaaaaaccgtgaattgctcatggaagcgatgtctccgcttggcaaggactctgtcaagggtggtgagggtgccatttacctctgggcaaaactacccgagaaatgctcagatgattttgaagttgtcagatggcttgcaaacaagcatggtgtggctgtgatccccgggagcgccagtggaggtcccggatatatccgggtttctttcggagggttgaaagaatcggatacaaggcttgctgctgagaggttaaggcgcggcttgcaagaacttgtgactgagggaatggtacagtga</cdnaseq>

Protein Sequence

<aaseq>MGSFGRLARRAVETEAPVMVKMQELLRGNKDVMSLAQGVVYWQP PEAAMNKIKEIVWEPSISKYGSDDGLPELREALLEKLRRENKLTKSSIMVTSGANQAF VNVVLTLCDAGDAVVMFAPYYFNSYMSFQMTGVTDILVGASNPETLHPDVDWLEKVLQ ENNPIPKLVSVVNPGNPSGAFIPKPMLERISELCRNAGAWLVVDNTYEYFMYDGMEHY CLEGNHIVNLFSFSKAYGMMGWRVGYIAHPNEADGLHAQLLKVQDNIPICASIIGQRL ALYALEAGPEWIRERVRDLVKNRELLMEAMSPLGKDSVKGGEGAIYLWAKLPEKCSDD FEVVRWLANKHGVAVIPGSASGGPGYIRVSFGGLKESDTRLAAERLRRGLQELVTEGM VQ</aaseq>

Gene Sequence

<dnaseqindica>4863..5315#4497..4605#3320..3378#3127..3233#2705..2861#2403..2462#1048..1176#498..545#325..387#tagatactagatcagcagcgatttttttttcagtttttgttttttcatttcttcctctgtcttgtttagatgttggggttggtgagcccttggggggaatcagttggtgactgactcgagaagttcagaggttgttgtctccgaattctttaaccccaacctctcctcttctcttctcttctctcctcttcttccttatactgcttcttgggctcgccgctgcgctgttctttggtcttcttggatctctgaccctaacatcgtatccaacttctccagttcttgttcttggaggggtgaggaagaggaggaggaggaggtgagatgggtagcttcgggaggctggcgaggagggccgtggagacggaagcgccggtcatggtcaaggtgatggagaagaagctccctgcctcgtcgaaatcgcatctttcccttctgatttctttggtcttgattgatgagttctatctctcttgtgccttgtgctcttttttcagatgcaggaattgcttcgagggaacaaggatgtgatgtcgcttgcgcaggtatcggatcgcaatttctttcggttatctgtccaatgattgtgtgtgtgtgtgtgtgttttcatgagagtaccaatgagtttgtgttgttgttggtacttggtcacaggcattttgatgtttgcatttgattgggaagagtgttcgaaatggattagtgaaatgatcatttgtattgttcctttactgtttgggtcaattgtctcagtaaactgttcacgttgtaaggtgaatcaggagagtttagtacatctgataacatattgtgctttgtataacacaactatttatcaagcatggaatttggaaactaaaatggttgtattcctgcttagttcctgaaaatggcgtttaactgcttatgctagccaaataagatatccaaatatatatattagtggcagtggtgtgtgtgctggcctcctattactgccaacagaacatgtgatatttactggaaattatttgctttcttttaaactaatgtaaatcttggatgcagggagttgtttattggcagcctcctgaggcagctatgaataagattaaagaaattgtatgggaaccatcaatcagtaaatatggctctgatgatggtcttcctgaactccgagaagcacttctcgagaaggtaatttttcaattgggatttgttagataatggtttccatggcccatgttatcaagccttcccagttatcacaaagcaattaccatgtgagacaaatgcacttggttgcctactgctaagcctttatcatgtgagacaaaggaacctgtgtgcctactactaagcctttgtcatgtgagaaattgattctggaattttttttacctcgatactgagagagtgagagtaaggccattcccaacccaaaacattagacatagtttccataaactccacatcatcaagaaataagtactagacactactcttccaatgcaaacactactatttcatacttaaatttaatgctacttatctcacataatgtcttggatgttgtgtagaaaccatgtctcatgcaagacatagtttcctcctctttcctcatttattcacttgccacatcagttttcatcctatgtgacagcttatttaatgctatggacactatcctagtcattgggttgggaatagcctaatatcaggaatcacatgctatccttacaaaattttatcaacgagaaagtttcagaaagtatctctcagcttctgtgggggcttgggggggagggaagctaagggcccctttgaatcgtaggattgagaaaacatagtaatagaaaaaacgtaggattttgataggaatgtaagtgtaaaatagaggattacaaaacgcaggaaaaacacaggaatgaccgtttgattgaaccgcaggaaaaacgcaggatttggatgagagagatagactcaaagaaaagttactaagaggttgaagctcttgcttaatttcctccaaaatttctataggattgttcattccataggaattttaaaggattggataggattcaatcctttgattcaaaggacttcataggaaattttcctataggattgaaatcctccaaaattcctatgtttttcctccaaatcaaaggggccctaagctctgttgagagctataatagttcaatgctaccatgtaacagtgcagtagcacagttctgagacattgcccttggtactaccgatgccccctcatgtagagatgggtgttatattcactgatttctcttactgcgataatattttattgaaaaactaataatatgaatggtaattattataaacatgttcgttgccttccctctattttcttcctgaaatttttagcatacattttgcagctgcgcagagagaataagctaaccaagtcgtcaattatggttacctctggtgcaaatcaggtaatgcacatgctttccagtttccacctgatttattacagctttgtcatcttattccggttttcctctgtgtattttgccttgtttagctagactataggatgccaatttgtttttcttcttcagttctatgagatgctttcttacttttctgtatgactgcttcacctaaaccttgtttaccaactaggttagccaaataaaagtcaaataaagtgatgtcttctatcaaattttggcaggcctttgtaaatgtggtcctcaccctttgtgatgctggggatgcagttgtcatgtttgcaccatattacttcaattcctacatgtcattccagatgacaggagttactgacatattagttggtgcaagcaatcctgagactcttcatcctgatgtcggtaagatagttcttccctttttctttttgttggagaaattggttagatgtctattatcaacagtcaattataaactagttgccactttttttccgcttctgagatcttccactttgtaagttgataagttctatcacttgatacattttctctcagttcaattgagagctatatggtttttgatcattcgatttggttcacttaaggactgtaaaagaatagttcattctggtagtacaatttatatttgtttaataaaatgcagattggttggagaaggttctgcaagaaaacaaccctatccctaaacttgttagtgttgtaaatcctggaaacccctctggagctttcattccgaagccgatgctcgaagtaacctgtctctctcattcacagttcacgcacacttgcattcgaggtgactttaattatttcttaatattgcaccattgttccagagaatttcagaactgtgcagaaatgctggtgcatggcttgtagttgacaatacctatgagtaagttagtactcaattactgattattgctcaactgcaacgtcattttggtgcttcttttctttctgttgttgataaagctcctcagtcccttcagaaattgatattacttaaagcaattgtaaagacgaggcactacgaaagaatgaactacacatggacatgatcaccttaagtagtagtttaaaaggacagttcaccataagcagttgagcaactgtgcttgacttcttgaagttgagtcctggatgacgccctctctgatagattaaataaataggacttcaagaatgtggtatctctttcaaaaagtatctgcaaaccacccgccagtaagggtttgtcaaatgtagttatcttcacatgctcagcttattcaagtagggaaaatcttccatttcttctcaacactagaattggacacatggaacaactcgttttcttttgaaggtcccatttcagttcctcaatttcagtgatgcccaaaataaaccctccagtcacttacaggcagagtggaagactcactgacaagagcctaaattgaatcacggattagactcttccctcaagaaaagtcttactttcagcagcctagcatccgctgtgcggcattgggaagaatatatctgttgttagttctgatcaaatcagaaatatttgatctcttgctaatctacccttgctctatatttcagatcatgtttaccttttcttgtctggctctgtagttgagtaatggaaattgatattagtttttgccatttccttaccctgatgttgatgttaaaaggatgctatgggtccttttcgaatataagcttgatggacttcccaatgttaatacaccaccgaatttgacatgtgtaaatcttgtatatgataaaagtataatttggaaactttcaattatcatcacattgatttttagataatctgtattcaaaatgtttgcacgaatactgaaattcaagaaaacattttctcggaagaattcttttccataaaaggtgactgaccttttactttctgtaaaataattctacatatggggctattttggattctgtataactttgatgttgaacttgcttgcaaaattggtgggtggtctccaggtactttatgtatgatggaatggagcactattgcttagagggtaatcacattgtcaacctcttctcattctcgaaggcttacggaatgatgggctggcgtgtaggatacgtaagtttgcctctctctctctctctctctctctctctctctctctttctttcatcctctgcttaggcttgaaaatgctgatgtaagagtcaatattgagttctttcagtttcatgaatttcccgcatccacttgaatcttttaccagggcattcccttaaattatcaccatagcaatgcagtataagtaacttagtggctgcacaatctgtgttgatcagtgagtcttacaagaactgatgagctgactgctgcagattgcccacccaaacgaagctgacggtcttcatgcacagctgctcaaagtgcaagataacatacctatctgtgcttccatcatcgggcagcgcctggcgctctacgcattagaggctggtccagaatggatcagagaaagggtgagagatctagtgaaaaaccgtgaattgctcatggaagcgatgtctccgcttggcaaggactctgtcaagggtggtgagggtgccatttacctctgggcaaaactacccgagaaatgctcagatgattttgaagttgtcagatggcttgcaaacaagcatggtgtggctgtgatccccgggagcgccagtggaggtcccggatatatccgggtttctttcggagggttgaaagaatcggatacaaggcttgctgctgagaggttaaggcgcggcttgcaagaacttgtgactgagggaatggtacagtgacagcccaatggatgcaagaaatacatgacatacaaatcacaaaagtgaaaattttcagttacataataattctgggattagttcaagagaagaaaagagccaaaatttcaagattacaacatggttgttagaaaatgctgaagcttttatttcagagaacttttgtcacattggatttcctagtggaaatttgatttggtgggttgagtagagggaaaaaaaaagactcatccaccctgtggaataccattgtcattaaaggggtattcatgtttagtacttactgttgcttgataacctctttccctacaatcaggacagcagctgtacacaagtaagatataataagatataatagcaacaataagtgtt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0178000, RefSeq:Os01g0178000