Os01g0179400

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Revision as of 04:25, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0179400| Description = Conserved hypothetical protein| Version = NM_001048734.1 GI:115434881 GeneID:4323878| Length = 6929 bp| Definition ...")
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Gene Name

Os01g0179400

Description

Conserved hypothetical protein

Version

NM_001048734.1 GI:115434881 GeneID:4323878

Length

6929 bp

Definition

Oryza sativa Japonica Group Os01g0179400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:4132703..4139631

Sequence Coding Region

4132724..4132777,4133347..4133517,4133641..4133700,4133904..4134026,4134906..4135181
,4135282..4135347,4135500..4135631,4135977..4136798,4137026..4137306
,4137564..4137796,4138022..4138260,4138367..4138558,4138808..4139080
,4139186..4139332

Expression

GEO Profiles:Os01g0179400

Genome Context

<gbrowseImage1> name=NC_008394:4132703..4139631 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:4132703..4139631 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgctggcaccacaatctactggttttctttccatatcaccagattctataatgttaaatgctacaggcagacccgatgaaaatttttccatagaagtgaatgtgccattattttttggcacacacgaggccattcaagacggaaggctgttgtcaatattcctccaaaaggggcagctgagatctaatatctgctatcaccctgaaaatttgactagtttggaggttcgaaatttgccacttgatgagctggagtttgcttcattacgtgggtttgttcagaaggcagaactccagcttaatttccagaaaagaagaggtcatggtttgctgtcagttatccgcccaaaatttagtggcatgcttggggaatcacttgatatagctgctcgatggagtggtgatgttattactatggaaaaatcagtcctagagcaagctaatagcaagtatgaacttcaaggggagtatgtttttcctggaacacgtgatagattccctatggaaagtcagagtaatggtttcatagagaaagcgatgggagggcatcttggtagcatgatgtcttcgatgggcaggtggaggatgagattagaagtacctggtgctgaagtagctgaaatgcttccgttggcaagacttctatcacgaagtacagacccagctattcgttccagatcaaaggaactttttatgcaaactttgcattctgttggattcaatgctgaaagtcttcgtgaccagctaaaggcattagaaatgtatcctgattggttggatgatgatacaattgaggatataactcttcctggcttagctgaactgagaggttattggcgtggttctcttgatgccagtggtggagggaacggcgatactatggctgattttgatttcaatggtgaagattgggagtggggcacttacaagacacagcgtgttctggcatctggttcattcagcaataatgatggcctgcgtcttgataagttatttattcagaaggataatgccactcttcatgctgatggatcaattcttggcccattaacaaatcttcactttgctgtgcttaatttcccagttggtcttatacccgcattagttcaggctatagaatcatcaaccacagactcgattcattttctgaggcaatggttgacaccaatcaaaggcattctacatatggagggagatttgagaggtactctagcaaagcctgaatgtgatgttcaaataagacttcttgatggcaccattggaggcattgatctcggaagagctgaagtattagcttctgtaaccccaacaagccgttttgtttttgatgcaaacttcgaaccgaccatacaaagtgggcacgttaacattcaaggtagtgttcctgttacttatgtagacagcaactccattgaggaagacctggaagggggagatggtaaacaaggtataataagaatccctgtttgggcgaaagacagaggcttgacaaatgacatcagcgaaacaagaatcatgagagacaagcctgatgagggttgggagtttcaattagctgaaagcctaaagggtttaagctggaatatgctagaaccaggcgaagtgagaataaatgcagatataaaggatgggggtatgacactgataactgcactgagtccttactcaaactggcttcaaggctatgctgaagttcttctccaggttaaaggcactgttgatcaccctgttgttgatgggtctgcctcatttcaccgtgcaaccgtggcttctcctttccttcggacaccactgacaaatttcgctggcaatgttcatgttatatctaacagactatgtatcagttccatggaaagcagagttgggaggaaagggagattgtcaatgaaagggactctacctctccacaatattgagccatcagccaatgacaagattgaactgaaatgcgaagttctggacatacgagcaaaaaatattttgagtggccaagtagacagccagctgcaggttacaggctcaatattgcggccagatgtctctggaatgattcggctaagccatggtgaagcgtatttgcctcatgataaaggcaatggtgctgttgccaccaggctgtcttcaaataaatccatctctgttcctgctggttttgaccaaagaacagtctcacgagatgtctcccactttctaggatcactatcaactagtccagacggccaacaatcagaaactgaaaggactcctgaacatggaagttttaagccaaacattgatgcccgactcaatgatctgaagctcacatttggacctgaattaaggattgtttatcctttaattttgaattttgctgtgagtggcgaccttgagcttaatggcatggttcatccgaagtacataagacctaagggtgtcttaacttttgaaaatggtgaggtcaatttggttgctactcaggtaagacttaaaaatgatcatttgaatgtagcaaagtttgagccagatcttggtttggatcctattctggatcttgttcttgttggatctgagtggcaatttaagatccaaagtcgagcaagcatgtggcaagacaatcttgttgtaacctccacacgctctgtggaccaggatgttctttcacctagtgaggctgcaaaggtttttgagtcacagcttgcggagtcactattggaaggtgatggacagctcgcgttcaagaaactcgcaactgcaacactcgaaactttgatgccaaggattgaaggcaagggtgaatttggtcaagcacggtggcgactggtttatgcaccgcagattccgagtttactatctgtagatccaacggttgacccacttaaatcgctggcaaacaatatatcttttgctactgaggtcgaagtgcaacttggaaaacgccttcaggcctctgttgtcaggcagatgaaagattcagaaatggcaatgcagtggtcactcatatatcagctaaccagcaggctccgtgttctcttccaatctacgccgtccaatcgacttctcttcgagtactctgcaacatcccagggttga</cdnaseq>

Protein Sequence

<aaseq>MLAPQSTGFLSISPDSIMLNATGRPDENFSIEVNVPLFFGTHEA IQDGRLLSIFLQKGQLRSNICYHPENLTSLEVRNLPLDELEFASLRGFVQKAELQLNF QKRRGHGLLSVIRPKFSGMLGESLDIAARWSGDVITMEKSVLEQANSKYELQGEYVFP GTRDRFPMESQSNGFIEKAMGGHLGSMMSSMGRWRMRLEVPGAEVAEMLPLARLLSRS TDPAIRSRSKELFMQTLHSVGFNAESLRDQLKALEMYPDWLDDDTIEDITLPGLAELR GYWRGSLDASGGGNGDTMADFDFNGEDWEWGTYKTQRVLASGSFSNNDGLRLDKLFIQ KDNATLHADGSILGPLTNLHFAVLNFPVGLIPALVQAIESSTTDSIHFLRQWLTPIKG ILHMEGDLRGTLAKPECDVQIRLLDGTIGGIDLGRAEVLASVTPTSRFVFDANFEPTI QSGHVNIQGSVPVTYVDSNSIEEDLEGGDGKQGIIRIPVWAKDRGLTNDISETRIMRD KPDEGWEFQLAESLKGLSWNMLEPGEVRINADIKDGGMTLITALSPYSNWLQGYAEVL LQVKGTVDHPVVDGSASFHRATVASPFLRTPLTNFAGNVHVISNRLCISSMESRVGRK GRLSMKGTLPLHNIEPSANDKIELKCEVLDIRAKNILSGQVDSQLQVTGSILRPDVSG MIRLSHGEAYLPHDKGNGAVATRLSSNKSISVPAGFDQRTVSRDVSHFLGSLSTSPDG QQSETERTPEHGSFKPNIDARLNDLKLTFGPELRIVYPLILNFAVSGDLELNGMVHPK YIRPKGVLTFENGEVNLVATQVRLKNDHLNVAKFEPDLGLDPILDLVLVGSEWQFKIQ SRASMWQDNLVVTSTRSVDQDVLSPSEAAKVFESQLAESLLEGDGQLAFKKLATATLE TLMPRIEGKGEFGQARWRLVYAPQIPSLLSVDPTVDPLKSLANNISFATEVEVQLGKR LQASVVRQMKDSEMAMQWSLIYQLTSRLRVLFQSTPSNRLLFEYSATSQG</aaseq>

Gene Sequence

<dnaseqindica>22..75#645..815#939..998#1202..1324#2204..2479#2580..2645#2798..2929#3275..4096#4324..4604#4862..5094#5320..5558#5665..5856#6106..6378#6484..6630#ggaattaaacttaaccaacttatgctggcaccacaatctactggttttctttccatatcaccagattctataatggtaatttgttattacatgctctttttcttgttcccacgcttttatatttaaatttctttacttaaagtgatttggtaccatattatgttccctttgtttgtaaatttctttgttgcaatgcacttagcacaactggcaacaatgattgtttctgcaggcagacctcagtctatatagaggattttataaattaaaacatctcctacatttaacatttttaaacactaaaggtatttctccattacctcaaaacaaagtcaaaaccaagtaatgaatataatagtaaaaaatagaaattttacataatctatatcaaccattcgccttttaactaaggtttgaggatcatgcatgcacaaaaggtatatttttcttatcaatttgattcacttttgtttccagtttatactgcttcacagacttcatttcaatgagaacatactctcaacagattatagcaaaattgagagcacatatgcatttattattaaagttgcatttcagtgtacttgtgtgggctccaatttatgctctcttttcattttgtcttctactccatgtccaagcagttaaatgctacaggcagacccgatgaaaatttttccatagaagtgaatgtgccattattttttggcacacacgaggccattcaagacggaaggctgttgtcaatattcctccaaaaggggcagctgagatctaatatctgctatcaccctgaaaatttgactagtttggaggtactctactggcatgcttgcatgttatccaacagatctttctagagcattgtgatcttgcttggaggtactctgctggcatgaatgtctaattttctctatccttgttttcttgttgtaaaggttcgaaatttgccacttgatgagctggagtttgcttcattacgtgggtttgttcagaaggtaacactgctatataagaacagggtttattatgattttaaatttctcttagctagcccattggcacatttgaatcagtctttttttacatatctgtatctagctctgttttgttgattctactatatcccatgtatttgtaagttgtagttagttgtgatgcttatgtaaaacagttacacatgggtcttttgttgttacaggcagaactccagcttaatttccagaaaagaagaggtcatggtttgctgtcagttatccgcccaaaatttagtggcatgcttggggaatcacttgatatagctgctcgatggagtggtgatgttgtgagttcttcttttcatatattcttttcgtgtttgctttacagtcatgccccatgtctggcacttagtagaatataccgtaagagtgtagttgcaagggtatggtactcactgtcacaatttataagttatttatggcttctagcagactaactttgctccgtctccgtgccatccaaactgccctggtgttgggaagtgctgtgatgaagatgctgggctttaaaacaccttggcaaacacaaaatgggcaagaaagaactccagtaaataccgtcactgttaagatgccagttggtctgtgcagttaatgcccattcattagaaagaaaatttctagatttctaattcaccccatggctagtctgtggcactatgtgcatgtgtggactggagaatagggaggggagaggatagggcaaatgacaggtggacctgatgctaacaaaaaaattaatgaaggcaagggaaataaaggttacggttagaatggtcatgttgaacactttggacaaaaaaaggtgatggtgatggtttgttttccatttttgttctttgctatgacgttttcctatttacctttgtgatggtattttgctacttcggcggcaattttggtggcacagagcaaatttatcctctctagtatctccattgttctcctttatttttgagaaaacagatgtatctccatcgtttgtgtttcccagtagaaaatagaaaataacaatgcgtctgcatgtccatatgttgtttttcctgacattatttatatattctgatttctgagtgagattcttatcttcttttactcatcagacataaaccacctttgtgctcacttgagctattcttttgtattttcttttcaacacccagattactatggaaaaatcagtcctagagcaagctaatagcaagtatgaacttcaaggggagtatgtttttcctggaacacgtgatagattccctatggaaagtcagagtaatggtttcatagagaaagcgatgggagggcatcttggtagcatgatgtcttcgatgggcaggtggaggatgagattagaagtacctggtgctgaagtagctgaaatgcttccgttggcaagacttctatcacgaagtacagacccagctattcgttccagatcaaaggtgcatgccattccctttggagggacaaaatattctgtttatttgtggtctgttggagacttggatgacagagccatttttatcctccttttcttttcaggaactttttatgcaaactttgcattctgttggattcaatgctgaaagtcttcgtgaccagctaaaggtacactaaagtaaacaatcttatgaaaatggaaacagatgcatagaattggcatcatatataatgttatatggttgcctttatcattgctgttgttaccattaccataggttgctacttttgtattaaacctatcccattgcttgcaccaggcattagaaatgtatcctgattggttggatgatgatacaattgaggatataactcttcctggcttagctgaactgagaggttattggcgtggttctcttgatgccagtggtggagggaacggcgatactatggtaagcatttcaggcagtaactattgataactcccttacagtggtctttctctttagactttgcaaacagttgcacagtggattgagcatacaagtatcttttagctatatggacctccctgcttgtattgttcaactttattcactttgtccctgacattgtgcagtgttaaagttagcggttagtttccaattcctttgcattcttttttatgtctcttgaagaacaactctacagaagcttgaaattacaatcaaactatcatcaggataatcttcctatacaagagccaaatatatgccccatatatttgaacttgattgtaatactcttatgtactacaggctgattttgatttcaatggtgaagattgggagtggggcacttacaagacacagcgtgttctggcatctggttcattcagcaataatgatggcctgcgtcttgataagttatttattcagaaggataatgccactcttcatgctgatggatcaattcttggcccattaacaaatcttcactttgctgtgcttaatttcccagttggtcttatacccgcattagttcaggctatagaatcatcaaccacagactcgattcattttctgaggcaatggttgacaccaatcaaaggcattctacatatggagggagatttgagaggtactctagcaaagcctgaatgtgatgttcaaataagacttcttgatggcaccattggaggcattgatctcggaagagctgaagtattagcttctgtaaccccaacaagccgttttgtttttgatgcaaacttcgaaccgaccatacaaagtgggcacgttaacattcaaggtagtgttcctgttacttatgtagacagcaactccattgaggaagacctggaagggggagatggtaaacaaggtataataagaatccctgtttgggcgaaagacagaggcttgacaaatgacatcagcgaaacaagaatcatgagagacaagcctgatgagggttgggagtttcaattagctgaaagcctaaagggtttaagctggaatatgctagaaccaggcgaagtgagaataaatgcagatataaaggatgggggtatgacactgataactgcactgagtccttactcaaactggcttcaaggctatgctgaagttcttctccaggtgcccattcctatttaatccccataattccattaaggagatatatgactaaataacataggcttactcattttcacctttttttcatagcattaattcaaattgatgaaaatgtaagatgaaactgaattattaagcatcaagttcagtttaaatagctagttcttttgttatgcctgtgcactccaagatgacctttccccccttgtttgtcatttggatgaaaggttaaaggcactgttgatcaccctgttgttgatgggtctgcctcatttcaccgtgcaaccgtggcttctcctttccttcggacaccactgacaaatttcgctggcaatgttcatgttatatctaacagactatgtatcagttccatggaaagcagagttgggaggaaagggagattgtcaatgaaagggactctacctctccacaatattgagccatcagccaatgacaagattgaactgaaatgcgaagttctggacatacgagcaaaaaatattttgaggtcattaccattactttatccttttatatgttgaaagttcttatgctgcagatttgctaacctgtggcttgtgggtgttggtgtgatctggttgattgtcttctaaaattgttcctttgattaaaaaaaagtcatattccttagcagaaatgttgctgatctgacatgtcataaattaaatttgactgtgcaatgtgtaggaccccgtattatataacttcttattgtctaatatgctttcgtcttaacttgtgcagtggccaagtagacagccagctgcaggttacaggctcaatattgcggccagatgtctctggaatgattcggctaagccatggtgaagcgtatttgcctcatgataaaggcaatggtgctgttgccaccaggctgtcttcaaataaatccatctctgttcctgctggttttgaccaaagaacagtctcacgagatgtctcccactttctaggatcactatcaactagtccagacggtaagtagtcatttgtttcgatcttcattagtattttagcaagtcccttttaccaatacattttgcttagcttattagtagtttcatttcacagttagttcctaactcttgctattacacaaaatattggaaagcagcatttatttttttcctttacttgtctctttctattattttgtctatttactcaacaagtcaactggattattcaatttaatgtgttaggccaacaatcagaaactgaaaggactcctgaacatggaagttttaagccaaacattgatgcccgactcaatgatctgaagctcacatttggacctgaattaaggattgtttatcctttaattttgaattttgctgtgagtggcgaccttgagcttaatggcatggttcatccgaagtacataagacctaagggtgtcttaacttttgaaaatggtgaggtcaatttggttgctactcaggtaagcatgagaattcttaagcccttgtggcataccttctttgtcattttatattaaatatacattctcatggttactgtggttttatatttttattcttatgcaggtaagacttaaaaatgatcatttgaatgtagcaaagtttgagccagatcttggtttggatcctattctggatcttgttcttgttggatctgagtggcaatttaagatccaaagtcgagcaagcatgtggcaagacaatcttgttgtaacctccacacgctctgtggaccaggatgttctttcacctagtgaggtaaggcactttcttcaatgaattgtagctaagctttactttaggtctgatagtttcttggtttattttcatctagttttcagaattttattactgtataataaggtgactgcctggtgaaccgtttactggttgattgccagcactctatccaagactgacataaagatattagacaattggttaatatgtgtgcttctcctatcatgcctaactctttgatattcttttgttcattgctgtttctaggctgcaaaggtttttgagtcacagcttgcggagtcactattggaaggtgatggacagctcgcgttcaagaaactcgcaactgcaacactcgaaactttgatgccaaggattgaaggcaagggtgaatttggtcaagcacggtggcgactggtttatgcaccgcagattccgagtttactatctgtagatccaacggttgacccacttaaatcgctggcaaacaatatatcttttgctactgaggtcgaagtgcaacttggaaaacgccttcaggtatttagcctttttacatttttgaaaaccgaagcattttaagcttactggcataatgttctgtatgaatatcatccgacctgaatcgctcacatcgttctgcaggcctctgttgtcaggcagatgaaagattcagaaatggcaatgcagtggtcactcatatatcagctaaccagcaggctccgtgttctcttccaatctacgccgtccaatcgacttctcttcgagtactctgcaacatcccagggttgattcatttttgcccactacacagagcaggagctgtggaatggcagctggtctgtacaaagatgtggcgcaccgacaccgatcaattgttcttgtagataatggaagttttgataggcaggcagttgtacatgtagacttgctgatgtttttgctctttgttgtatctacattctttttctcggaaacaaagtttctgggtttgtacataggtagcaaattttagctcctttagctagttaacgtaagatgtaaagaactacctgcataaattatatgaaaatttccaatctcgtggagtc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0179400, RefSeq:Os01g0179400