Os01g0179700

From RiceWiki
Revision as of 04:25, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0179700| Description = Similar to GTP-binding protein YPTM2| Version = NM_001048737.1 GI:115434887 GeneID:4325347| Length = 3686 bp| Defin...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os01g0179700

Description

Similar to GTP-binding protein YPTM2

Version

NM_001048737.1 GI:115434887 GeneID:4325347

Length

3686 bp

Definition

Oryza sativa Japonica Group Os01g0179700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:4159622..4163307

Sequence Coding Region

4159946..4160042,4160140..4160243,4160378..4160533,4160629..4160700,4161796..4161843
,4161923..4161970,4162295..4162367,4163188..4163201

Expression

GEO Profiles:Os01g0179700

Genome Context

<gbrowseImage1> name=NC_008394:4159622..4163307 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:4159622..4163307 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgaatcccgagtacgactaccttttcaaacttctcctcattggtgattctggtgttgggaaatcgtgcttgcttctcagatttgcggatgactcatacctggacagctatatcagcacaattggagttgattttaaaatacggacagtagagcaggatgggaagaccatcaagcttcaaatctgggatactgctggacaagaacgtttcaggacgattacaagcagctattaccggggagctcatggaataattattgtatacgatgtgacagaccaagaaagcttcaacaatgtgaagcagtggttgaatgaaattgatcgttatgcaagtgacaatgtaaacaagctccttgttgggaacaagagcgacctaactgccaacaaagttgtgtcatctgaaacagctaaggcgtttgctgatgagatgggcatccccttcatggagacaagtgccaagaacgccactaatgtggagcaggccttcatggctatggccgcatccatcaaggacaggatggctagccaaccggccgcttcaaatgcaaggccaccgaccgtgcagatccgcgggcaacctgtcaaccagaagacgtcgtgctgctcgtcctaa</cdnaseq>

Protein Sequence

<aaseq>MNPEYDYLFKLLLIGDSGVGKSCLLLRFADDSYLDSYISTIGVD FKIRTVEQDGKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTDQESFNNVKQW LNEIDRYASDNVNKLLVGNKSDLTANKVVSSETAKAFADEMGIPFMETSAKNATNVEQ AFMAMAASIKDRMASQPAASNARPPTVQIRGQPVNQKTSCCSS</aaseq>

Gene Sequence

<dnaseqindica>3266..3362#3065..3168#2775..2930#2608..2679#1465..1512#1338..1385#941..1013#107..120#ctacttttacgacacctccccaccccccgtctccttctccctcgtctccagatccgtgggtcgaagcagcggcggcgcccgatccacggcggtcactccctccgccatgaatcccgagtagtaagcactcccatccctcacctcctccttccttccttcctatggttcgtgatctccgcccccggtttcgccgtgctgctcgtttggttaggttgcccggatctgagcgggatcccttcgcatggtttcgatccggatctcaacttggtggctaggtttttcgtcttcttcacacgtggttttgacgacgcgcgggttgttttttttgttgacgatgatctcctcattatcacgtcaattgcaaaagggggaattcggcaatcgctcatcacaccatgatttgctgatgtctcatacatatttggggaatgggaattggattttattctaccaggaaatttagtttataatgttgccttatgtgcgtgccaatgtatcatatcagctcatgtccgtctgctctgtagttatgtgtaaaaacattgccatagttttgaatttggatatcttccacaagtactaatactaggcatattggtcccgtttggatatcaacatacttttggagcagatgtatatgcatcattattcagttacttttacctgcatatataagggagtcctaaataatacaatggtctctattgacatttattcatgccatgatttgatagttacctataagggaagttgacttttgggatatggaaagataacattttattgtaaataattcccactactgtaggagtgcattactacatgtgataaaacactgtgttgaaatgaagaaggtagcagttgtatgcatgtaattgttatttcattttctctatgtactgctactgtaacactagttttttcttttggtcaatttcagcgactaccttttcaaacttctcctcattggtgattctggtgttgggaaatcgtgcttgcttctcagatttgcggtacgagtttaactcattgtctcattctcctaattgtgtttttgtactaagtcattctggaataaatagttcttatatgtaaatgtgcttcagtagaaacatgcagtgtaggatcatacctcactattgcaatagcaaagtggttatgataattatgcaagggattccttccattggtcatctttttgttataaacatgaactgtaagatcatgaatccacaattcactcgtattaaataataaagaatcaagcatgaagcttgactaaattttctgttacgtagattgtgaatgttattgatgtacttgcttcctgtgattaggatgactcatacctggacagctatatcagcacaattggagttgattttgtaagtaatatattgttgatttacttgagttaagtttactttttgtagcacagcaataagttgtgcattttgtttgcagaaaatacggacagtagagcaggatgggaagaccatcaagcttcaaatcgtaagattactgctaccttttcttcatcgcttttgatcccgtattgttttttacttgtgctagacaaattcataaataaggatgtccagttatgatgcaatggttattgtgaatgaatctagaaagatatgttctgaaggttatgttcccatatttgtgaaatattggtgctgctcatcggtgaaatttcattttccttgctcgtaatagattctatagattcttgagagtaagttatatggtgtgccctcattgtcaggggtgaaaattgttcagtttatgattttttgcggttgtggcaagatctggtctcagaggatttaccatcttaattgtgttctctttatccaaagggtaaagtctatttttgggccttgaactttgctaagcccatttatcaccctgaactacaaaactggttattttttcaaaacattcaaagccagacacaacaccctgaaccatatgttatggtggttgtcatgaactttaactaggtaagtttcatggtggtggaccttaatatgcataataagagtctgaattaggaaaatcatgtctatttcaaacaaaaccactaacaaattatgtctcagggtgtcttttggctggtttaaaagttgagggtgaaaaataatcgatttctttgtagtttggggtgaaatagtttgaacaacaagttcaagggctaaaaatggaccttacccttatcgaaatatgcatatgatatttttttacccatatttgaatgtgttcgaatgctgaacgttgtatcgacacctgaactcaattctggcaagtatatactttataatattaaaacccagaattgaattcagatatgggctatggagtgctttggtatgtccgtcattgttattgcaaattgtgccactgatgagaaatctttaaatttgtttagaaactattcttttttgagtagcaaactttgagaagtacattaaacttggtgaaatgtgatccatatccatagagtaatctgaagtggagcaatagtccaagtgcatcatgaatttagtatttgaaaatattgttaagactgtggtatgagtatactcttttactttgttacagtgggatactgctggacaagaacgtttcaggacgattacaagcagctattaccggggagctcatggaataattgtaagttggccacatgatccaaccgctattttctgcaaagtattggccatcttgtccctttcattaaactaattcatcctatcttgtgcatgcagattgtatacgatgtgacagaccaagaaagcttcaacaatgtgaagcagtggttgaatgaaattgatcgttatgcaagtgacaatgtaaacaagctccttgttgggaacaagagcgacctaactgccaacaaagttgtgtcatctgaaacagctaaggtaagctctccagagtcatttgattgaatgtgtattggctttgatcgactgtgtattggctttctcaccattgtcatgtgatgctcttatttatacgcctttaacatatctacaatcgttaaaatatcccgcaggcgtttgctgatgagatgggcatccccttcatggagacaagtgccaagaacgccactaatgtggagcaggccttcatggctatggccgcatccatcaaggacaggtacaactttaaatccacatgagcagtgtagctcttgtattaccctcatatctgggtagattttagtaacgaacatcccacctgtcatttttctcaggatggctagccaaccggccgcttcaaatgcaaggccaccgaccgtgcagatccgcgggcaacctgtcaaccagaagacgtcgtgctgctcgtcctaaagataaccaagtctttccttccatgtaaaattcgacgtatgttactactgtttgctcactacaacgtatttgtgatattcatttgaacgcccttgataccatcttttctttaatcagatggttaggcagctgcaaatatatatgtaaccttgctttgttgctctttgctcacgaatcgagaggagcaagcagaaccagtgtatttgattcttttcacgcttacatttttcccatttcattgcatacaagtattctgtgttgaggtttagttagaccggacagcggactgattacaacaattttacaacttgtcacaggtgttgg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0179700, RefSeq:Os01g0179700