Os01g0193900

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Revision as of 04:27, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0193900| Description = DIRP family protein| Version = NM_001048818.1 GI:115435049 GeneID:4327312| Length = 6986 bp| Definition = Oryza sat...")
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Gene Name

Os01g0193900

Description

DIRP family protein

Version

NM_001048818.1 GI:115435049 GeneID:4327312

Length

6986 bp

Definition

Oryza sativa Japonica Group Os01g0193900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:5029157..5036142

Sequence Coding Region

5029312..5029398,5029494..5029556,5029836..5029913,5030443..5030614,5030797..5031180
,5031959..5032042,5032143..5032288,5032810..5033070,5033147..5033328
,5033421..5033703,5034702..5034896,5035088..5035303,5035388..5035540
,5035630..5035827

Expression

GEO Profiles:Os01g0193900

Genome Context

<gbrowseImage1> name=NC_008394:5029157..5036142 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:5029157..5036142 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcagatttaggtcctcaatggagcaaggatgagcttatgcgcttttatgaagcctaccgtcgacatggaaaaaactggaaaaaggtcagtgcatctgtgggtggaaaatcagcagatacagtagaagccctttacagtgtgcaccggactttcttatctcttccagaacgtgaaggtactgccatgggatttgttgcattggtaactggtcatcacaatgtttcgcaggatgaatccaagagtcataaaggaagtgatcaaacagttagagcatctgggaaggtacggaaacgtgaagctacagggcagaaagagaaggaagcacctcatgctcaccgctcctatcatgaaagaagaacttctggattatcttctttcaagaaaagatactatggagaacttgtcaagaacattccaagacatccttcagggaaacgtactcctcgtgtaccagttatttttcctgcagacatgaatgttgctcatgctggcataccagaaacagaaaatgccatcaactgtaccaaaaaggctagtggagctaccaataatgagcttgaatgctcatctcatggaagtcctggaatctcagaatcagccaagtttgttcaaggccagactttcctggaagctaaaggaactggaagcttgaaaaagagaagaattgagcagagtatggaacaaggtcagacaattaaagatgagcataaaaccgcaatggtggctaaagaagggaatgaccttactgaatatcagagacttaccaatctattttccccagatgagatgttggtcttagatgtcttggagagtttagtgactgtacccagtaaaatatcagagcctaagattaatattccttcaggtacacttggaagggatgattctgcattgtctcacagaagggaggaaggtccttcagttaagagatccaaacaagggaagcaagttggtgaatgcagtgcctccaagacaaggaataaaaggagaaagaagttaatagctgaagaggtgcctactgaaggagtcacttctaatcatttagatttgccagaagagcgtcaagttgatgccactgagtgcgccttgaattctgatctggaaaggggaacagttgatttacctgaatcaactgcaaatatttctaccaaaatccctgatttgccatcacaattaaaacctgagataaatatgtcgagaaggagcaaaagaaaatccaaaagtccttgtggttctaagtatgtcgtttgcaatggagcagataatttacaggctaggagattgcagcattgcttgtcatctgagtcacttcgtagatggtgtacatatgagtggttttacagcgcagttgattatccatggtttatggataatgagtttgtgaactacttgaattttgcgaatttgagccatctgtcaaggctcactcggtccgagtggagcacaataaggagctcacttggcaaaccccgacgtttttctgatcattttctggcagcagaaaaagataaacttgaaaattatcgcaaaaaagttaggcaatactatgctctactaagtgaagattcgtgggattctctaccaccagacctagctcgaccattttcaattggtcagcaggtaatcgttcgtcacccaagtacgcgggaactttgtgatggtaaagtggtgatgatggaacaggatcgttataatgtccagtttgataggcctgaccttggtgttgatgaagtaaaggacactgattgtatgcctgtaaactggttggataatctgcctgatgacctcaaaaagaggagcttcctttcaaataattcacacaacagagtagaggttgagcaaattccaaagtttacttcaaaagagaactgggatcatatcagcggagaggccgagccatccaaaaccatgcacataacttcagatgaacaggttgaaattgctgtggatattgaaagactatccaacaagagtacatctggtaattgtggaccattacagccgctccagtctgttgatgacaatgtacggagtagaggtttgtcagagcacaggaatggtcacaatgatgagctagattcttatattacttcctttgtccaaatgtcattggcacaagccaagcagatggttgacgaagccatgaaggaaatctctgagaatggtaaaagttctctagaagaaacaggcatatcaaatgaagcgacggattgtacaggcccagaaccggaatctgctgctaattctgaacttccgcgcaacctgatattcaactgcattgccacgcttcttgcaatcaagcattttagcgagggccgacatccacctcctaacatagcaggcgtcctggagcgtgcttgcttaatgctgcgaccaagctgtgcagagaacctgcccatctataacgaaatagagaattttatcgctgtcataaagaaccagatactagctcttgtgccatcggcatcaagcaatgccaggctacccatgtacatgtaa</cdnaseq>

Protein Sequence

<aaseq>MSDLGPQWSKDELMRFYEAYRRHGKNWKKVSASVGGKSADTVEA LYSVHRTFLSLPEREGTAMGFVALVTGHHNVSQDESKSHKGSDQTVRASGKVRKREAT GQKEKEAPHAHRSYHERRTSGLSSFKKRYYGELVKNIPRHPSGKRTPRVPVIFPADMN VAHAGIPETENAINCTKKASGATNNELECSSHGSPGISESAKFVQGQTFLEAKGTGSL KKRRIEQSMEQGQTIKDEHKTAMVAKEGNDLTEYQRLTNLFSPDEMLVLDVLESLVTV PSKISEPKINIPSGTLGRDDSALSHRREEGPSVKRSKQGKQVGECSASKTRNKRRKKL IAEEVPTEGVTSNHLDLPEERQVDATECALNSDLERGTVDLPESTANISTKIPDLPSQ LKPEINMSRRSKRKSKSPCGSKYVVCNGADNLQARRLQHCLSSESLRRWCTYEWFYSA VDYPWFMDNEFVNYLNFANLSHLSRLTRSEWSTIRSSLGKPRRFSDHFLAAEKDKLEN YRKKVRQYYALLSEDSWDSLPPDLARPFSIGQQVIVRHPSTRELCDGKVVMMEQDRYN VQFDRPDLGVDEVKDTDCMPVNWLDNLPDDLKKRSFLSNNSHNRVEVEQIPKFTSKEN WDHISGEAEPSKTMHITSDEQVEIAVDIERLSNKSTSGNCGPLQPLQSVDDNVRSRGL SEHRNGHNDELDSYITSFVQMSLAQAKQMVDEAMKEISENGKSSLEETGISNEATDCT GPEPESAANSELPRNLIFNCIATLLAIKHFSEGRHPPPNIAGVLERACLMLRPSCAEN LPIYNEIENFIAVIKNQILALVPSASSNARLPMYM</aaseq>

Gene Sequence

<dnaseqindica>156..242#338..400#680..757#1287..1458#1641..2024#2803..2886#2987..3132#3654..3914#3991..4172#4265..4547#5546..5740#5932..6147#6232..6384#6474..6671#tcaagcaaggttaaactaaaagtaagatgaattgatactttttagatgacacccagtaattgtagtctcttaaaatatcatccaactcagcaacaatgtgtagacatgatctttttccgtttcactaaaatgttttgattttgcagaagagaaaaatgtcagatttaggtcctcaatggagcaaggatgagcttatgcgcttttatgaagcctaccgtcgacatggaaaaaactggaaaaaggtttgctattcaattttccgaccaccattttttgtgttcatgtttcattggtgtctttggtgccaaagtaagaaagttgtttgttgactctgcaggtcagtgcatctgtgggtggaaaatcagcagatacagtagaagccctttacagtgtgcaccgggtgagtttgtgttctataattaatatgccctagctatttgcgaactttaccaccttgcatcctctacagtttacttggttttgtgaactaaagttgataatttgctcatctagaagactagaacaggacagtatattgatgatatattatttatgcagaagttcaagaatatttagttataatatataattcaccttgcagccatgcctagataaatgtaataggttaaatttgataatagaacctaaagtatttacacattgccatttcttgctgtagactttcttatctcttccagaacgtgaaggtactgccatgggatttgttgcattggtaactggtcatcacaatgtttcggtaagcttatgatgggtttacttgttgaatgttttattgagtatgcttctggtttctggatatgccaaatttcagttgtttctttttgagagttttcaatcatgtgcgaatatttgtactatttgaagctaccatgcataggtcagtttcgttatagcaaaaggccaagtgtgagcactcctgatcattgtggttcttttggatttagttataatttttattataacagtttttgccatatgatgatgcaattagtatattgtgacataagaataactatatcatgatgatggacgttactaacattgaaagaacaagctaacagccaatctagagtgcgttgactattgatagtggtgattgttttgcatttcctacatcacagtctctgaagaatgatgagtaccaatgctttgttcttcttatgttcgattctgaattaacctatttactgcaaggtctgaattatctgaatcgacatacaaattgccctactttttccttaaatcacttgaaattcttaaaatagcaggatgaatccaagagtcataaaggaagtgatcaaacagttagagcatctgggaaggtacggaaacgtgaagctacagggcagaaagagaaggaagcacctcatgctcaccgctcctatcatgaaagaagaacttctggattatcttctttcaagaaaagatactatggaggtaagtattgtaaagcaaatatatatatatatttatttatcccttaatcttctcttggcctcctcaaaatgaaattaccaaagaaagaagcaagagctagttgaatgcaagagaacatttctattggataataacttactctactggcctgcattgttttactaatttgtatgcttttccagaacttgtcaagaacattccaagacatccttcagggaaacgtactcctcgtgtaccagttatttttcctgcagacatgaatgttgctcatgctggcataccagaaacagaaaatgccatcaactgtaccaaaaaggctagtggagctaccaataatgagcttgaatgctcatctcatggaagtcctggaatctcagaatcagccaagtttgttcaaggccagactttcctggaagctaaaggaactggaagcttgaaaaagagaagaattgagcagagtatggaacaaggtcagacaattaaagatgagcataaaaccgcaatggtggctaaagaagggaatgaccttactgaatatcagagacttaccaatctattttccccaggtactttgagacatttctccccatcattgatgtcaaactcattgtttcgttgagttcatgtaaatatacgagtttttggttccattttctgttcacaaaactaaacaatatattttatatgaactacacattatttactctgccattgttatatacaatctgttcagcattttacattgtggatagtttaacatcttgatagctactgcaaatagtgcctaagattatcctaagcttatatcagccatttgctcaaaagtaagatgtcactgggatgcccttaatttgtatcttcgatttctttcagttattggaacacactttcaggaatctaaaatcttgaatggttttgtgcgattatgatctaagatgacctacaaaatgaaacaatctttatgtcacatctttccatttttaagacaaaggagacccaaagcccctggttcacatgtattgacaccttgacagcaaacaatatctgctcctgccctctaccagtgagaaaggagaaaatattacaccaagcctagttaacgcattaggtggccaacaatgtagcctgtatgaaactaatgagaacatgttcatagtgtttgattactcattgagtccatttcctctgctatcttattattgttcagaagtcagaacattttccttgtcagttttgattggtgctagagcaactactttttatcttataatagttttcagtagtcattcttggagctgctaagcttaatcgtaatgttaaatactgacaaccactgttttgcagatgagatgttggtcttagatgtcttggagagtttagtgactgtacccagtaaaatatcagagcctaagattaatattccttcaggttggtaatattatttcagactcctggtatatctttttttcataacatacgttatctcatgcatgttgcgcatgtgtcttttctgatgtatattgatcaggtacacttggaagggatgattctgcattgtctcacagaagggaggaaggtccttcagttaagagatccaaacaagggaagcaagttggtgaatgcagtgcctccaagacaaggaataaaaggagaaagaagttaatagctgaagaggtaagatatcgtaaatagtgagcttatgttgtatgtacagcatgaatatatatattttttaaaggaaccctttcttgctcatggggaacaaaccaaatttgatgaattgacgcctatatctgagtctactgtactgtcaattagatgcttccattgcatctaacatttagtatatcattgcatccccataaactcataaagttctcggcttggtgtcgatggaaagtcaatcccgtttcatttttatagggtacattttatcctttaattagatgctttcattcttgcatttaaaattagtattgccgtcgcatcccttaaaatcataaaattctgggtttggtgtcaatggaaagccatccttcactttattttaatagggtgcattttgtcagtgtgattataatttatcccttctgagatcgaagtgcaccttaaatcagacagcatttgtgttctttcccgtattgctctcttcaattagtctgatggcacttctattttcacacttctttttgcaggtgcctactgaaggagtcacttctaatcatttagatttgccagaagagcgtcaagttgatgccactgagtgcgccttgaattctgatctggaaaggggaacagttgatttacctgaatcaactgcaaatatttctaccaaaatccctgatttgccatcacaattaaaacctgagataaatatgtcgagaaggagcaaaagaaaatccaaaagtccttgtggttctaagtatgtcgtttgcaatggagcagataatttacaggtacacccaccattcatcaatgctagtatgccacagattgagttcaactgtagtcttaattctggcttactttcaggctaggagattgcagcattgcttgtcatctgagtcacttcgtagatggtgtacatatgagtggttttacagcgcagttgattatccatggtttatggataatgagtttgtgaactacttgaattttgcgaatttgagccatctgtcaaggctcactcggtccgagtggagcacaataaggaggtattgactagcaaactctggaagctatatcattgtttttctttgtcctcacttctttttgttttcgctatactaagtatttttatctgcagctcacttggcaaaccccgacgtttttctgatcattttctggcagcagaaaaagataaacttgaaaattatcgcaaaaaagttaggcaatactatgctctactaagtgaagattcgtgggattctctaccaccagacctagctcgaccattttcaattggtcagcaggtaatcgttcgtcacccaagtacgcgggaactttgtgatggtaaagtggtgatgatggaacaggatcgttataatgtccagtttgataggcctgaccttggtgttgatgaagtaaaggtacaccttttcaatatcagttgcatttcatgattgccaattgttatactatgtaggatattaggtcctttctcataattgtttcttcatatatctgttggaacagattttttttgttcatttcattaagaaggaaactactacccatacaaacaagggctcacaagccctacacccaaaacacacccacaaggcgacacatgaccaaaaccaccctacgacagcctagtacaaaggaaaacttggagcgcaagagctccagctaggcactaaagactaacttctgttgactctgcctgcaacatctccattacgtttggattcactcagttgaatatgcagtcatttcggtgtttccaaatttcccaacatctaggataatcaatgaattcagccactgcaaaagatttcaaccattatttttaactataggcagggaaaaaactttctagtatactaaacactgaccttgcaattgaattctgtgattttttagttagtaattcatatcaaaatatgttatcaagcttttgaactacgagtaaattttacatcccagtaccacaaccaccacacttgagtagaggatctgcccttttagttccagtagtgttcataaaattgtagtcttcctaaggataactaatcacatcccacacagtatgctgaatcatccatgcatagttgccaggagttcatcaccatcagtcatgcttcgaatttgagttatccatcttttttaaacaaacaaaaaaaatatggcccaacacaaagctgtcaggtacttcagttatttatatcatggaaataaatttatgagactcctcacgtttttatttttcacttggtaaccatttgtttaacaacaattcacaacttattcatttcatattcatataatttatattcaagaatcttgagatgatattttagcataaagatatactgttatggtagttatatgattatgtcaagacatgtaattgtttctttttcaggacactgattgtatgcctgtaaactggttggataatctgcctgatgacctcaaaaagaggagcttcctttcaaataattcacacaacagagtagaggttgagcaaattccaaagtttacttcaaaagagaactgggatcatatcagcggagaggccgagccatccaaaaccatgcacataacttcagatgaacaggttgaggttttgctgtccaaatctatttttaagaagcattacgatcatagtctatctatccatgggcaggttacgagttatggccatgcagcaaatgctgcctgttccttgactgctccatgaaatgcaaccggccaactgctcacgtttgtgaaatgttctaatgctgattaatatatttactatcacaggttgaaattgctgtggatattgaaagactatccaacaagagtacatctggtaattgtggaccattacagccgctccagtctgttgatgacaatgtacggagtagaggtttgtcagagcacaggaatggtcacaatgatgagctagattcttatattacttcctttgtccaaatgtcattggcacaagccaagcagatggttgacgaagccatgaaggtaggttaaagtttagctgatcaattccctcaaggtatctaattttgcatttctcactcaatatgttatttgatgttttgccaggaaatctctgagaatggtaaaagttctctagaagaaacaggcatatcaaatgaagcgacggattgtacaggcccagaaccggaatctgctgctaattctgaacttccgcgcaacctgatattcaactgcattgccacgcttcttgcaatcaaggtaaaacattcacctgcttcactagcactaatcctccatggttactagaattattccaattcagtacatcttccttttcaattatgcagcattttagcgagggccgacatccacctcctaacatagcaggcgtcctggagcgtgcttgcttaatgctgcgaccaagctgtgcagagaacctgcccatctataacgaaatagagaattttatcgctgtcataaagaaccagatactagctcttgtgccatcggcatcaagcaatgccaggctacccatgtacatgtaaatacttccaggcttccagcagacgaagaggcggtgcctggttgcttgatgtcgagaagaattgatgaatccatagcgtctgggggaggtttgaaaatgtatgagcttggatctacagcatcagaagacggcgggtcatcgttgactgtccagctctcttctaaactgtgtataaactctttagaggaataagctcttacagtttttagtttcatagatttctcaatatggttttaggaatggaggaatcgacattccagttgtagttaataataacgattcctacagtcatgaatacattgtccagttgattcac</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0193900, RefSeq:Os01g0193900