Os01g0199900

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Revision as of 04:27, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0199900| Description = Similar to Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) (AIR carboxylase) (AIRC)| Version...")
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Gene Name

Os01g0199900

Description

Similar to Phosphoribosylaminoimidazole carboxylase catalytic subunit (EC 4.1.1.21) (AIR carboxylase) (AIRC)

Version

NM_001048847.1 GI:115435107 GeneID:4327345

Length

6688 bp

Definition

Oryza sativa Japonica Group Os01g0199900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:5405030..5411717

Sequence Coding Region

5405158..5405336,5405458..5405673,5405788..5405899,5406315..5406377,5406448..5406586
,5406802..5406857,5408068..5408141,5408250..5408397,5408485..5408658
,5408789..5408876,5408976..5409089,5409702..5409805,5409907..5410021
,5410417..5410514,5410652..5410758,5411256..5411364

Expression

GEO Profiles:Os01g0199900

Genome Context

<gbrowseImage1> name=NC_008394:5405030..5411717 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:5405030..5411717 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcactccaggctcctcagcgccccctcccacgcctccgccgcctcctcctcccccctccccttcgccgccgcccacccttgccgcgcctcctggacgccgcggcccacctccccgctgccgcctctatcgctgctgcgcgccaccgcctccatgcatccttctcctcctcccgaggggcatagcgaccagcctgtgcatggcgtcaccaacacggtcgtcggcgtgctggggggaggccagctggggaagatgctgtgccaggcggccagccagatgggggtcaggatggccatacttgatcccctcgaggactgcccggcgagctcggtttgccacgagcatgtcgtcgggagcttcaatgatggcgccacggttagcgagttcgcaaagaggtgcggggttttgacggtggaaattgagcatgtcgacgctgtaacactcgagaagcttgagaaacagggcatcgattgtgagcccaaagcctccaccatcatgattattcaagacaagtacaggcagaaaactcatttctcaaaatttggaattccgttacctgactttgtggaagtagatactttaagtagcatagagaaagctggggaaatgtttggttatcctctaatggtcaaaagcaagagattagcatatgatggccgtggaaatgctgttgctcacgacaaaaaagagctatcttctgttgttgcttctcttggtgggtttgagcatggcttgtatgttgagaggtggacatcttttgtaaaggagctttctgtcattgtggcaaggagcagagacggttctacggtgtgctatcctgttgttgaaaccatccacaaggataacatctgccatgttgttgaggctcctgccgaggtgcctgataaaataaagaagttggctactaatgtagctgaaaaggctatcaaatcattggaaggtgctggtgttttcgctgtagaattatttttaacacaagataatcaggttttattgaatgaagtagctccaaggcctcacaacagtgggcatcacacaattgagtcatgttatacctcgcaatatgagcaacatttacgtgctattcttggccttcctcttggtgatccttcaatgaaagcgcctgcatcaataatgtacaacatcctgggtgaggatgagggtgaggcaggatttactcaagctcatcagttgattgagagagctttggacatttcaggtgcatctgtccattggtatgcaaaaccagaaatacggaagcagagaaagatgggccatattacaattgtggggccttcaaagtacagtgtaaaagcacgcttagataagttgctgcaaagagacgcatatgaccccaagaaagttgcagttaaacctcgtgctgcaataataatgggttctgattctgatcttcctgtcatgaaagatgctgcagtagtattgaagaaattcaacataccttttgagcttacaattgtttcggctcatcgtacaccagagaggatgtaccattatgcattatctactaaagaaagaggcttagaggtcataattgcaggtgcaggtggagcggctcacttaccagggatggtggcttcattgacttctgtcccagtaataggagtacccatcatgacttcatctttacatggaactgattccctcctatctattgtccagatgccgaaaggtattcctgttgctactgttgcaattggaaatgcggaaaatgcaggtttattggcagttaggatgctggcctcaagagatcctgagttgggggacaaggcaactgaataccagcatgatctgagggatatggtgttggagaaagcaaaaaggctcgaggaactaggttgggaggaatataccgagctatacttgaagaagcattga</cdnaseq>

Protein Sequence

<aaseq>MHSRLLSAPSHASAASSSPLPFAAAHPCRASWTPRPTSPLPPLS LLRATASMHPSPPPEGHSDQPVHGVTNTVVGVLGGGQLGKMLCQAASQMGVRMAILDP LEDCPASSVCHEHVVGSFNDGATVSEFAKRCGVLTVEIEHVDAVTLEKLEKQGIDCEP KASTIMIIQDKYRQKTHFSKFGIPLPDFVEVDTLSSIEKAGEMFGYPLMVKSKRLAYD GRGNAVAHDKKELSSVVASLGGFEHGLYVERWTSFVKELSVIVARSRDGSTVCYPVVE TIHKDNICHVVEAPAEVPDKIKKLATNVAEKAIKSLEGAGVFAVELFLTQDNQVLLNE VAPRPHNSGHHTIESCYTSQYEQHLRAILGLPLGDPSMKAPASIMYNILGEDEGEAGF TQAHQLIERALDISGASVHWYAKPEIRKQRKMGHITIVGPSKYSVKARLDKLLQRDAY DPKKVAVKPRAAIIMGSDSDLPVMKDAAVVLKKFNIPFELTIVSAHRTPERMYHYALS TKERGLEVIIAGAGGAAHLPGMVASLTSVPVIGVPIMTSSLHGTDSLLSIVQMPKGIP VATVAIGNAENAGLLAVRMLASRDPELGDKATEYQHDLRDMVLEKAKRLEELGWEEYT ELYLKKH</aaseq>

Gene Sequence

<dnaseqindica>129..307#429..644#759..870#1286..1348#1419..1557#1773..1828#3039..3112#3221..3368#3456..3629#3760..3847#3947..4060#4673..4776#4878..4992#5388..5485#5623..5729#6227..6335#tttcctccgccgccgccgcctcctcctccgctccgcgcggccgtctcccacctctcgcgcctcacctcctcctcctcctaaaccctcgctaaaccctagcctcccacccccccaccccaccggggagcatgcactccaggctcctcagcgccccctcccacgcctccgccgcctcctcctcccccctccccttcgccgccgcccacccttgccgcgcctcctggacgccgcggcccacctccccgctgccgcctctatcgctgctgcgcgccaccgcctccatgcatccttctcctcctcccgaggggtaagggcccgtttctccctgctggtcttcgagttcgttgcgatttctgtatcattcgttggcgccgccgcaggattttcacctgattggattttttttttttggtgtgtggtgcttgtaggcatagcgaccagcctgtgcatggcgtcaccaacacggtcgtcggcgtgctggggggaggccagctggggaagatgctgtgccaggcggccagccagatgggggtcaggatggccatacttgatcccctcgaggactgcccggcgagctcggtttgccacgagcatgtcgtcgggagcttcaatgatggcgccacggttagcgagttcgcaaagaggtggtggcccctagttgcaaagctcttatcaagcttcattcggagaacacttgtttactttcaagctcttatggtttacaaactgttgtaaaaaattcctttggttgctgttaggtgcggggttttgacggtggaaattgagcatgtcgacgctgtaacactcgagaagcttgagaaacagggcatcgattgtgagcccaaagcctccaccatcatgattattcaagtaaactttcacttcttgttctaaccatctctatatttcgttgttgctaaattttagtacaagttatctttagtacctttttactgtgaagatgaaaccttgaattacagttagcacttgtgctatctaactagcgttatgcatactgttaacattctgagcacttttgctaactaggttaattagttgtggccatatctattgttcctacttcctccaaatagattgctactgtgcattttagttatttataaattttatggcattcataccatgtgtcacctggaaattgtatttgtggcgacacctcttttttagtacagtttgcatacaaaatcttcatgctacggcttgctgcttcatatgccattttatccttatctacttcatttgatgcatccatgttttatttcaggacaagtacaggcagaaaactcatttctcaaaatttggaattccgttacctgactttgtggaagtaaggcactaatttctatcttgttagaaactaattgagtgtctgatataaataaagtaatacattccaggtagatactttaagtagcatagagaaagctggggaaatgtttggttatcctctaatggtcaaaagcaagagattagcatatgatggccgtggaaatgctgttgctcacgacaaaaaagagctatcttctgttgttgcttgtaagttgataaaaattaatggagctgctttctttatttgaattcctaaaattatactctctcaaggatgctgttacttggtttacagtagtatttgacatttttttcagctgttaatttgtggcttatacttttgaacagatgatgagctgatccactcagctgtacaagtaaatgagctgatgaggattttttttttcatttttcccttgtagctcttggtgggtttgagcatggcttgtatgttgagaggtggacatcttttgtaaaggttagtatcaatttaatttttttgggtcaaattggcagctagtaatttaaatttctcttggtcaagtagacaactaacgctctttaagtgtctcattagattgatcaccaaacactatagctaatttaacacatttgtttcataattcagatatttttgaattttctaggccctttttttttgtaatttaaatcatcttcagtatcatggttcacatggcagtagatttaaggtcatatgcctgtgtagtcactaggtcatcgtgtaaattatgctacatcctggtacccctatggctctacagtcatgccgcattccttgttttctgttgattttaggatatcttctgcaagttcgttacatgatactccctatgttccaaaatataaggcctataggttttctacagtctccaatgtaaaatgtttgccattaatttctttcataatatattaacaactacaaatttgacattatacaaaagtgctttcaaatacaagtctaatgatgtcacatctatgacactaaacatatatattgttagcttgattcttagtcaaggtttgcaatgttgattttcttaaaattgtggcatcttatattttgaaacggagggagtatcttcttaatggcaaaattgcatttgaggtccgcgaaatattgcctttcgtctatcaagctcgtgtactttctagtttgtacagtgaatttggctttgaaacttggcaacatgataaatatagttggtttcagtgcaggtcaactgtttcagtatttttcaataccacacgtgccatattttgcaaaagatacatggggatgcatcctaaaagggggatatattctaatctttcagatcataaaatttcaaatctatattcactctacaaaggcctgtattgtatctggcacatgggccattttgtcatcaacagcaggtgtaatgaagggcctaattaaacatattcaagtagttgagggacttgagctaacaaatttaaagtattgagattttattagacaaaatgcagcagtccaggtacctcaattgcaattttgcccttttgttttcagagtcgtgtttgagaatcagacaagaatataactgtttgctctaatgtttacaacattgtcatggtttatggttgatgaccttttgaattaagatacttctattatttatagtctgttgctttctttcttgttttaggagctttctgtcattgtggcaaggagcagagacggttctacggtgtgctatcctgttgttgaaaccatccacaagtaagattttcttttatgattaccttgtgttattgattggcattgtctgtgttgtgcttttgccctttggaattcccaaaatatgaatccttagattggaacatccagggataacatctgccatgttgttgaggctcctgccgaggtgcctgataaaataaagaagttggctactaatgtagctgaaaaggctatcaaatcattggaaggtgctggtgttttcgctgtagaattatttttaacacaagataatcaggtttgctgggaacatacctgtatcataagttttaatccttcttgagtggtgttggcatatttatacccatgttgataatttcactaggttttattgaatgaagtagctccaaggcctcacaacagtgggcatcacacaattgagtcatgttatacctcgcaatatgagcaacatttacgtgctattcttggccttcctcttggtgatccttcaatgaaagcgcctgcatcaataatgtacaacatcctgggtgaggatgaggtaactattgcaacactatctttttacttatccttgctatttgggccatgttgaatgtggataattaggtttccatattcctgttacattatccagttacctttattggcattgataatttatgatatagggtgaggcaggatttactcaagctcatcagttgattgagagagctttggacatttcaggtgcatctgtccattggtatgcaaaaccaggttggttcacatactcatctgatggtgctacagaaaatgaacgtgcctgcttcttgattttcatgttgctgtttataaaattgtttctttttctttcagaaatacggaagcagagaaagatgggccatattacaattgtggggccttcaaagtacagtgtaaaagcacgcttagataagttgctgcaaagagacgcatatgaccccaagaaaggttagattatcacatgatgtttgtaattctgatctttgttaacttccccgttgatagtggtagttaataaagtatcttcaggattgctgtgtagtgcagcaccataaccttttgtttggcctaggattgtaaatggtgaagttcaattttgttgagctgttttcaccaactttagttattacaagggcatttttatttattttcaattaaggagcatcctgttctctgggagttgcaaaatagtagcttggaatgggcagtagattttaataggatctattttagccaaatgaagaaagaataacctgtcaggatggaaagagactgtaggaggcatgtgtattctgaatcatctatttagaacatccaagtctgagaatacagttgaggcctgacaaggatttaattgatagatatccatgcacacagcaaattatatggtttgtctaaatcataggtaactctgtttgatgctcaccgttgttgttttatctgccatggtaaaactaatcatgctttgttgtgccaccttctgacccactttactttctaaaaagtcctttcatgttcttcataccaatgggctgacaaagtataataatattgtactagttgcagttaaacctcgtgctgcaataataatgggttctgattctgatcttcctgtcatgaaagatgctgcagtagtattgaagaaattcaacataccttttgaggtttgatctctgaaacccttccattgacaagttatgaaatgtttacatgctaagtcaaaattttctaaggatgcaaaatgattgactgtcgaattttgtagcttacaattgtttcggctcatcgtacaccagagaggatgtaccattatgcattatctactaaagaaagaggcttagaggtcataattgcaggtgcaggtggagcggctcacttaccaggcaagtgtgacagaaaaaacacatgcatgaatgcatcataatacttcatattagttcaagaccaaattatgtgcatactggtacacttgtgttttgtctagattatggtacttggactcatttcatttcgagcatcaattcttgctgtatttttcttccaaactgagtaataaggaatgctatataactggatcatttcattgtgttctattgtagcaagtagcaagtgctagtttcaccctgtgcttgagttgctgaaatggatgcaacacacgtttggataatgggttcgatgttggaaatgtagaccaaacgcttattttataaagaaaattattcacaatccatcttgattaatgaatgataatatataaaaaaaactatttttggttcagggatggtggcttcattgacttctgtcccagtaataggagtacccatcatgacttcatctttacatggaactgattccctcctatctattgtccaggtgagtattctaagtctttcattaaaaagcagaattgtagtgtgcgtcatacacaatcaaaagttacaacagttactgttgcaattggaaaggtattcctgtagattctggtgttgatactctcactaatttgacagatgccgaaaggtattcctgttgctactgttgcaattggaaatgcggaaaatgcaggtttattggcagttaggatgctggcctcaagagatcctgagttgggggacaagtatgatttcttcttttctgcaattgtcctgcaaattttgaagtttggttagtgtaactgtatgtctgtatgcaattgataatagacacctcccagcagtaagttgcatatgttcgacctggctcgcatatgttaattcctggggttatacataggcagtggtttgagctgatatcttgcaggctgcagcaagccagtgagtagagactgatgagacctttggtaatgtaccatattgccaacaaaagctagtcagtagaaatgtagaatcatgaaaagttcccaattgatcaatctgtttgaaaagaatgatcaatgttacgttacaggtgctcgaaatttgcagtaggtcattagtcatcagtagaactttctcattttgccttgacctgctgtaaacctggtttcgttgtcagggagcacaagtgattatttatttggctagcatgttttcagttgttacactacgcctgtctgatgtatgctattgctttcagggcaactgaataccagcatgatctgagggatatggtgttggagaaagcaaaaaggctcgaggaactaggttgggaggaatataccgagctatacttgaagaagcattgatctctgctgcccgtttaattgacattctttttgatccagtgttgacataagcagatatggtccatggttgtggcaaattcttaaaatccttttcattcttttctgcatagtgtcttttttctcgctaatttataaatttcttcgctcattgaaatttggttttctttagtggaggcctggagagggcgtgccgacttacgaagtgaaagatgtcgacgaaacacggcgcatgagcatctcagtagcagaaagctttgcttgtataactgtaacaacatgcctgcctgaaatgttcatgtggatcttatgatgatatttcagggaaaaaaatcaaccaattttaacgagttctg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0199900, RefSeq:Os01g0199900