Os01g0209000

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Revision as of 04:28, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0209000| Description = Alg9-like mannosyltransferase family protein| Version = NM_001048895.1 GI:115435203 GeneID:4325533| Length = 5274 bp...")
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Gene Name

Os01g0209000

Description

Alg9-like mannosyltransferase family protein

Version

NM_001048895.1 GI:115435203 GeneID:4325533

Length

5274 bp

Definition

Oryza sativa Japonica Group Os01g0209000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:5910486..5915759

Sequence Coding Region

5910667..5910941,5912529..5912616,5912730..5912889,5912997..5913217,5913295..5913590
,5914156..5914267,5914356..5914494,5914830..5915026,5915114..5915203
,5915292..5915432

Expression

GEO Profiles:Os01g0209000

Genome Context

<gbrowseImage1> name=NC_008394:5910486..5915759 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:5910486..5915759 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgctctcgtcggcgcgtcagcgtcgggccacggccgcgtcgccgccgaccgacgacggctactccaaggaagccaaggacaggaggcggcgccccagcggcgaggaggaggaggagggcatccggtggttcctcccgttcctcgccctcggcctcctccgccacatgagcgcgtcctccaacctgatccacgactgcgacgaggtgttcaactactgggagcccctccacttcctcctctaccgctccggcttccagacctgggagtacagttccaactttgctcttagatcatatctgtaccttttcattcacgctcttgtagctgggcctgcttcaatgatttttggggagcataaggttcgagtgttctactctgtgagaatctttcttggccttatatcaactataacagaaactgttctggttgttgctctttcaagaaaatatggaaaaagacttgcttgttatgtccttgcaatgctgtgcttaaccagtggctgcttctttgccagtaccagtttcttgccaagttcattctccatgtatgctgtaacactttcctctgcactcttcctacttgagaactatgctgctgcagtctctgttgcagctgcaggagttatccttggttggcctttctcaattttggtgtttctccctattacggtttactcactaattagaggatctttcagaagagtatttttatctggatttctgacttccatgttccttcttgtcctttcggttattgctgattactactgctatggcaaatggacagcatcagtgttcaatcttctgaaatataatgtgtttggtggtggtgaaagtcacttgtatggaacagaggggccttcattctattttaagaatggattcaataacttcaattttgcgttcatcttggctctgctatttttggggtttgtgccatttgcaaggaagaaatatgtcccagatctattgatagttgtatctcctgtctacatttggttggctttcatgtccttgcaggcacacaaagaagaaaggtttctttatccaatttacccattgatatgtgttgcagctgcagctgttattgacacctttccagattttttccatgacaaatattcatctgaacagtctatctttgaaaagatagcaaagggcctgcggcctttgatccttggcttcattttgtgtgcttcccacagccgaacattctccatgttgaatggatatggtgcccctattcagatctaccagcatctggaacatcatgaagatactgggcctggttctgttctctgtgttgggagtgaatggcaccgctatccatcatcgttcttcataccctcctatattagtgaagtttggtggatagatgatggcttccgagggcttcttccatttcccttcaatgaaaccctgggaggcaccactgctgctccatcttatttcaatgacaagaacaaggcctctgatgaacaatatctgaaagacattggggcatgtagcttactggtggaacttgatcttagacggccttacccatcccgaggaagtgatttgtcgacatgggagacactggctgcgctgccctttctggatagagagctttcacctgcattataccggtcattcttcataccgcaccgatggcagcaaaacaatgtttttggcctgtacaaactgctgaggaggctgcctactgaccaagcgtaa</cdnaseq>

Protein Sequence

<aaseq>MSLSSARQRRATAASPPTDDGYSKEAKDRRRRPSGEEEEEGIRW FLPFLALGLLRHMSASSNLIHDCDEVFNYWEPLHFLLYRSGFQTWEYSSNFALRSYLY LFIHALVAGPASMIFGEHKVRVFYSVRIFLGLISTITETVLVVALSRKYGKRLACYVL AMLCLTSGCFFASTSFLPSSFSMYAVTLSSALFLLENYAAAVSVAAAGVILGWPFSIL VFLPITVYSLIRGSFRRVFLSGFLTSMFLLVLSVIADYYCYGKWTASVFNLLKYNVFG GGESHLYGTEGPSFYFKNGFNNFNFAFILALLFLGFVPFARKKYVPDLLIVVSPVYIW LAFMSLQAHKEERFLYPIYPLICVAAAAVIDTFPDFFHDKYSSEQSIFEKIAKGLRPL ILGFILCASHSRTFSMLNGYGAPIQIYQHLEHHEDTGPGSVLCVGSEWHRYPSSFFIP SYISEVWWIDDGFRGLLPFPFNETLGGTTAAPSYFNDKNKASDEQYLKDIGACSLLVE LDLRRPYPSRGSDLSTWETLAALPFLDRELSPALYRSFFIPHRWQQNNVFGLYKLLRR LPTDQA</aaseq>

Gene Sequence

<dnaseqindica>182..456#2044..2131#2245..2404#2512..2732#2810..3105#3671..3782#3871..4009#4345..4541#4629..4718#4807..4947#tggtaaatactctgaattctcaaatgtaaacccctgctgtgacaagctccagccctgaagtcccaaaccatggcctaaatctgcttcaaaagaagcaagaattcccaaccccttcccgagggtctgggcctcgaagcggaagcattcacacccgcaaccctctcgcctctggactccggccatgtcgctctcgtcggcgcgtcagcgtcgggccacggccgcgtcgccgccgaccgacgacggctactccaaggaagccaaggacaggaggcggcgccccagcggcgaggaggaggaggagggcatccggtggttcctcccgttcctcgccctcggcctcctccgccacatgagcgcgtcctccaacctgatccacgactgcgacgaggtgttcaactactgggagcccctccacttcctcctctaccgctccggcttccagacctgggagtacaggtctcgcttttttctcgcttcactctccctaaactaaaccctagctgtacagttcgttttgatgctcgatgcgcgggcggaatcgcggaccgggattgcacggatttgtgctgttgtacggagcaggagagaatcggagggtagattttaacaagtgttcgtagtggttcgatggggatgtgaagatctgccgctatttggggatggtttgctgacacttctgggtgggcgagtctgagtggaatggagccttggagattacctgggaatgcgtagtggcgggtgagcatttgaaggacttcggcttgggagcaatggtgtagccgtgtaggttagtggaggtgcttgattgaagggttttaggtcgcgtgagtatgcactgagttacaattcggaggtttatgacatgaagcgttttgttttagatttggcaccaatgatgagtctgtgtgttggggctttgcattgtctgcttctgtagtttgtctgatttggggttttgcaaattgtggtgatttgatgaggctggggtgtccaaatgattatatgaggtcttcagatgcatggcagatttatggagcaaaattgtttgattttcatgaatcggggggggggggggggggggcgggtggaatagttttaggtaagggtgactgactataccactaggataaaaggcactggtgcagtgataaacatggccaactatcttagaatcaaagagaacggtatttaattgtttcaatttttattgggttaccatatttttcttgtattctaagattggaaataagctgtgatacttaacagctcattgtaactatattgccaaactgacatttaaaataaatattgacggttcattcatgtttgaggctccaatgttttgcattcctaggggttccatttgaagcctggtttcagagaactagtgaagttgctggtatggttttattataattagcatgcggaagtttgtttcgagtggcttcagaatcggatgatgataaggcagttgcatggtttctgtaactgtggctgaaaaaatgttgcttacactaacaaggatttgttttgatagatcttgttctaacaatatgattccttctattattattatttttgctaatccatacatgtaacaatatgtgttctcactcgatggtgcctccctggctggcaatatggtggatggaaatcttcatagtgtagatgggccactttgtgttttggtttcagcttctgcagtcttttatctttcaattccagagcttgtaattttgttcgggggatcacacaggcagtaggatggcattgttgcagtgtgcttaccacttgttatgctttttctattgttagtttactatgtagcgggatgcttttcctataatggaaaggggggactgggggaggcatggcctctctgttttgaaaaaaaaaagaaaaaaaaaagctctagtatctaaacagaatcaactagacatagatctaattcgaagaattcttgtatataatttcacagcgtttgtgagtacatgacgatatgaatggttttgatattgattttgtgtaattctatccttgcagttccaactttgctcttagatcatatctgtaccttttcattcacgctcttgtagctgggcctgcttcaatgatttttggggagcataaggtttgtactgttctattctttgtttcctcaccttttaagatctgctaattaaattcttactagtcaatacctaccactaatcgtatttaatttattctttcatgattgttaaggttcgagtgttctactctgtgagaatctttcttggccttatatcaactataacagaaactgttctggttgttgctctttcaagaaaatatggaaaaagacttgcttgttatgtccttgcaatgctgtgcttaaccagtggctgcttctttgccagtaccagtatgtttctcagatttcagttctatattatcatatggaagctctattgcagctgtgtaactattcaaactgaagtggtaccttatatttttttttccttattgcaggtttcttgccaagttcattctccatgtatgctgtaacactttcctctgcactcttcctacttgagaactatgctgctgcagtctctgttgcagctgcaggagttatccttggttggcctttctcaattttggtgtttctccctattacggtttactcactaattagaggatctttcagaagagtatttttatctggatttctgacttccatgttccttcttgtaagttgcacatgtatattgtcattgtttttacaatgaagtccaaatttgatctgattgtgaaagttgcatgccaggtcctttcggttattgctgattactactgctatggcaaatggacagcatcagtgttcaatcttctgaaatataatgtgtttggtggtggtgaaagtcacttgtatggaacagaggggccttcattctattttaagaatggattcaataacttcaattttgcgttcatcttggctctgctatttttggggtttgtgccatttgcaaggaagaaatatgtcccagatctattgatagttgtatctcctgtctacatttggttggctttcatgtccttgcaggcacacaaagaagaaaggtaatcatctgaatgtaaatattaacttgtttatcagttgagtatgcaatatatataagatttattaatctgagtgaaacgatttttctctgcataaacacaatgaagagataactaaacatgcttattctgtttgtttcctctcatgaacttaacacagtatctgcatttgtgttttgtatagctgtatgcccctgttgccactggccaacagtagcagtgttttctttcagttgctttatcgctggcatgttcttcatcctataaatttcatgtttgcccacagtaacaagtttaactttctgaatctagaattagatacagcaacaaggttctcccaaacttgtcttaacctggcaaacttcaaggcagtgtgtttggcaccttgtgattattaattatgttgatgtggaaagaaaacaccattgttctggggcatgaaaacaattatctgtttgagtgcttctgatattctcctagttttttttttatggttaatgctactctacagatgagaactacaaaaactgaccattttttttctttcctctatctgtttatgcaggtttctttatccaatttacccattgatatgtgttgcagctgcagctgttattgacacctttccagattttttccatgacaaatattcatctgaacagtctatctttgaaaaggttatcttaaagaccttgattgcatttttatatcattttgttaatgtgataatatttttttaaaaaattcctctgataaatatggcagatagcaaagggcctgcggcctttgatccttggcttcattttgtgtgcttcccacagccgaacattctccatgttgaatggatatggtgcccctattcagatctaccagcatctggaacatcatgaagatactgggcctggtaaggatctaccaatgtgttgatccactaattaaacatttctctctgtgatacattttttctcttgtttggagttttggacctgtggttgcttattgcacactgcgcagagctattatggattcgtgatataacaatggcttcaaccttgtgcgtattattgcgagggtttgctgtagtcttgctcttgtagggctcttactgtagtgatagttacacaactgctgattgagatttattgagtaatctttcgatagaattaagcaatctttcatggaacgatgaattatgaaggaagcattttgaactcactagctgtgtctctttgttttcaggttctgttctctgtgttgggagtgaatggcaccgctatccatcatcgttcttcataccctcctatattagtgaagtttggtggatagatgatggcttccgagggcttcttccatttcccttcaatgaaaccctgggaggcaccactgctgctccatcttatttcaatgacaagaacaaggcctctgatgaacaatatgtattttctcttgcctttaaactttacagcacatattttctcttgacaatactccgagtaacaacctccttgcacttctggttgcagctgaaagacattggggcatgtagcttactggtggaacttgatcttagacggccttacccatcccgaggaagtgatttgtcgacatgggaggtaattccatgttcacaatttcattcatttgttaactctcatgtctgttttcctacttttgccatctgataattcgtttaaactccagacactggctgcgctgccctttctggatagagagctttcacctgcattataccggtcattcttcataccgcaccgatggcagcaaaacaatgtttttggcctgtacaaactgctgaggaggctgcctactgaccaagcgtaatctagtactggaacctcattatctataacacagtgaagtagcaaatcgtatgattgattagtcggcatagactgattcacaaattttgattaccagatgtttttcactgaaatgccccttttccctatttgtgaaattctgaacaatgttatgtgtagactaatctatcccaacgaatggagttgtataactgaatcattagcttttctatttttcttgacggaatctgaggattgcgtgattgtgccctggaaagtggaaaatagtgcttaggcacttagccagcactatactcgtttctactgcatgatgaatccttggcaatgg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0209000, RefSeq:Os01g0209000