Os01g0218500

From RiceWiki
Revision as of 04:29, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0218500| Description = Similar to SP3D| Version = NM_001048946.1 GI:115435305 GeneID:4324585| Length = 5251 bp| Definition = Oryza sativa ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os01g0218500

Description

Similar to SP3D

Version

NM_001048946.1 GI:115435305 GeneID:4324585

Length

5251 bp

Definition

Oryza sativa Japonica Group Os01g0218500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:6493496..6498746

Sequence Coding Region

6493577..6494080,6494175..6494236,6498027..6498067,6498198..6498421

Expression

GEO Profiles:Os01g0218500

Genome Context

<gbrowseImage1> name=NC_008394:6493496..6498746 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:6493496..6498746 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgacgggcagtagttgtccggccgattcttcccagctgctgtaccctcgccggggtgcccccaccaccaccaccacctcccgtcctcctctccatccgctcatcgctcatgcgccctacgacgtcgtcctccaccgatctgtcgtcctctccatcagctcagctcgtgatcaggctgagctcgcgagcttctggtgctatataaggctgggtggtggtgcaagtgcgaagcgagcggccggtgaggacgatcgatcgagatcgagcttgacggcggcgagaggaggaggaggggagacgatgagcgggcgggggaggggggacccgctggtgctggggagggtggtgggggacgtggtggacccgttcgtgaggagggtggcgctgcgggtggcgtacggagcgcgggaggtggccaacggctgcgagctccgcccctccgccgtcgccgaccagccccgcgtcgccgtcggcggccccgacatgcgcaccttctacaccctggtgatggtggatccggacgcgccgagcccgagcgatccaaacctcagggagtacctgcactggctggtcaccgacatcccggctaccacaggagtctcttttgggacagaggtggtgtgctacgagagcccgcggccggtgctggggatccacaggctggtgttcctgctgttcgagcagctggggcggcagacggtgtacgcaccggggtggcgccagaacttcagcacccgcgacttcgccgagctctacaacctcggcctccctgtcgccgccgtctacttcaactgccagagggagtctggaaccggaggaagaagaatgtga</cdnaseq>

Protein Sequence

<aaseq>MTGSSCPADSSQLLYPRRGAPTTTTTSRPPLHPLIAHAPYDVVL HRSVVLSISSARDQAELASFWCYIRLGGGASAKRAAGEDDRSRSSLTAARGGGGETMS GRGRGDPLVLGRVVGDVVDPFVRRVALRVAYGAREVANGCELRPSAVADQPRVAVGGP DMRTFYTLVMVDPDAPSPSDPNLREYLHWLVTDIPATTGVSFGTEVVCYESPRPVLGI HRLVFLLFEQLGRQTVYAPGWRQNFSTRDFAELYNLGLPVAAVYFNCQRESGTGGRRM </aaseq>

Gene Sequence

<dnaseqindica>82..585#680..741#4532..4572#4703..4926#agagaccatttccctcctccctcctctctcgccaaacacgacgacgtcgcctcggtttagtcgtcgtcggccggcagccggatgacgggcagtagttgtccggccgattcttcccagctgctgtaccctcgccggggtgcccccaccaccaccaccacctcccgtcctcctctccatccgctcatcgctcatgcgccctacgacgtcgtcctccaccgatctgtcgtcctctccatcagctcagctcgtgatcaggctgagctcgcgagcttctggtgctatataaggctgggtggtggtgcaagtgcgaagcgagcggccggtgaggacgatcgatcgagatcgagcttgacggcggcgagaggaggaggaggggagacgatgagcgggcgggggaggggggacccgctggtgctggggagggtggtgggggacgtggtggacccgttcgtgaggagggtggcgctgcgggtggcgtacggagcgcgggaggtggccaacggctgcgagctccgcccctccgccgtcgccgaccagccccgcgtcgccgtcggcggccccgacatgcgcaccttctacaccctggtacgtacgtacgcacgcctccgccgccatcgccgccggcgcggcagctagctgagctgacacactgctcgatcgattcttgtggcctctgcaggtgatggtggatccggacgcgccgagcccgagcgatccaaacctcagggagtacctgcactggtgagtcatcgatcgagtcagcacagcagcagctgttgtagctgacgcgccctgtgacgactgatctgattcagattcagagtccagattcagctccctgcaccgcaccctcgtcgtctcgtgtcgtctcgtctatcgtgtcgtacgagatagagcgtatagctatagccagccaagtgcccgtgttggtgttgcacttgccgccacgagatcgatcgagccctttttgcctcttttttttttaaaaaaaaaagagagaatatttttgcatccgggtagcagccagtgaatacagttacgaaacatgaacgtttgatcgttgactgcatgctagctagctgcttttcaaaagaaaaagggcacacatttcttttaatttagatgaaaaacaatatatatggatcgatcacacattaatctctctctgcaaattctgctatagtgatgtgccgagcactgtttgattgggccttctagctagttttcctcgagataataacacactcatatgtataatatactgtatataatatatgatcatgatctctggaatgatcattacgtcgtctttgggagaaaaacacatgattttacacaaactgagatatagcaaagcaggaacgacattgagtagaacgatcttaagatagtatatattcaatcgatcgtacgtaggcaaataaactaattaattaatcaactgactgagatactagctttattacagaaacaacaccaaatttatcagcattcaaacattattttatttattattaatttccatggaatgtctcaaacaatgtcagaaaatcaggtgatgttttaagtgcagtatagtagttttttatgtgtacaaaagttcaatatatatttttcagaatcatttcaataaatacatcatagctaggattatcggtaaaatattgtcacatataattcctagctaggaaaaatatataaaacaatttgcctgtatctacagtagttgcacatgctaaggaattgtatatatggattggtagatattatatttgtattgcacatccatgaagagataagaggtttaattttactcttccattatctaaaaggcaggtaaaacatttccattaattatctacaaaaagtctaaaaggtaaatatcatgttggatatatgtatcaaacgatagggttttctaaaacattctgtccaacaatttaaaatgtgcttagtttctttttttccccttgtttagaaaatagtttttatgaagttattttgagtggcattttccctcaaatgtggtgtgtatgaaatttactaaacaatttaacatttgagcttaaatgcatacacatcacatgaaattaatagcaaaacaagttgatttcttctcttcctagcttggttcaactaaagtaattaagagatgataaaatattatttggataaaagatggtgtaaattaaagtatctatatctgaaactagagaatagattttgatttttcttgataaatttattagagaagaatttgcagtacacataaaaacaagccaagaaagtaaaagtaattaaggagggaattaatgtaatgtgcacaattgctagaggaacatttgaaaagtaatccatatttatttgatgtcttttgcatggttgcatttccgattaatgttcatatatatgtgaggccttcgaagtaatttaccaattaaaatgataatttgcatgcacattttgtattgtatatagtgatgacataaaatgattttgattggcattgctacaaaaatgattttggcattgctgtatatgatcatacggccggggatattgattgcaatcagttgcttttgtcaatagttaattagaattttcgagtgtgaagggagcttatagacgaactgaccgaaacaataaaattaagaatcctcccaacacaaaaccctcatgtgcactgtacgtagatgtgtccaaagatcatgtgcaaaatttgtacaatcaatgaaaataggaccggatgtttcacatatatagttaattaaattccaggccataattttttaacaaaacaaggttgattatactaaatataagaaatgattataagtctattgttacaataaaggacataaaatttgccaagacaaaccaatatactccatatatagctcaaaaagtcacaagctagagatgcgagcagaagagcgcaaccacaatccttttgagttatttgtgcaacaaaaactctatttcttaatatattgacgtgcaatccttttgcgcgttcgcgaaaaagaagagcgcaaccacaacattgttgacgtcaccaactccagcacatgcaaaagtatatatgaatgtgtatatgtcaccatcttcgatcctttgacaaatctgtaagtcaacgtcatcaaacaaattggagacccagattttaaaatccgcaccaccgattgaatcgtcggtaacttagcatacaaatcttcctagatcttcatcgatgatcccagaaatacagaagacattgtcaaagatatacaaaagacaaaaagaaaaaaaactctagacaatcctaattccatggacttcctaaaagacaaatctcatctatctagaatatctaaaattccttttttttaagaaaccctaactaaaaacttactggataaagacaagacacgggtccccttcctccttgtcaccggcgaggatacaggagacgaggagggtacctgatgacggtggcacatgaggtacccttggcagaggtgagtcatgagcatacgatgctgctatgtgtataactgaagaatttttgttgagagaattccaggcaataatttacagaaaaccccattaatgctggttttaatccggctaggctagtgccggtagtgatagtcagtatctctctagttatgagctagttccaaaggccatttctatttgttgaaaccctacaataaaattaataaccggttcatcctagctagtaaaaagagaattccattatatatctaggtaaaatttattccaagacactaatgaaatttgtggcctttttctctagtacactagttttatggttatttgttaaaagacacttgaccgttagttaatatatattcttccaacagagagataaaacttaatttgcaaaagacaataatccttgaaccaccttcaatataaatttgaatattttttaagctgaatttaaacttgtcatacaaaattcaggaataatatattgtcccaaattacggaaatgagaattgccaaaaaaaaatgcaaaatcagaaaaatgaaaaaatattggatgaatttaaacgactttttaaaatgtttttatttccacaattttagtgcacattttctacaaagggaaggagcatataattacgcagattaatcattctacaagtacttagataaattcttaggaaaactaattgcccagttctcactatatatattatatgagtagaaaatacaacgtacactcctagaaatattttcatgccaaattaagcaaagctagttcctcattttgcgaccttcacatggttagttattggttaatatatactccacttgattccaaataatgtcagtcatttcatacttgctcacaagaatcaagaaaacatttcaaattacttcattggaaaattaatgtgaaccgatttacgcgacattctttcaccctattcaaaactgatcaacggaacttcaagttccatgtgctacctatgctgaaaatataatggaactgatcagaattaacgatctatcaatgcaggctggtcaccgacatcccggctaccacaggagtctcttttggtactgaacaactatagcactctctgaacaatcttgcaacagttacattcatatgtgtgcacatcaacacatgcatgaaatcagatcactctgatgtgaagaagagtacaattgcttgctaattttgcagggacagaggtggtgtgctacgagagcccgcggccggtgctggggatccacaggctggtgttcctgctgttcgagcagctggggcggcagacggtgtacgcaccggggtggcgccagaacttcagcacccgcgacttcgccgagctctacaacctcggcctccctgtcgccgccgtctacttcaactgccagagggagtctggaaccggaggaagaagaatgtgagctagctctcccctctctatctctcactccctgaatttgggacaagtcctgaattttgcatgacaaatcctatactcggaacgatttgaaatggtaaaatttgatcatatgtatttttagctccctatcctctctctctgtacgttagttacataaatgctcccaccgattctaaatgtaatttatttatatttctctatttttctcgaaatttaagttgttataggacgttgaggaactttgtcccccatttttcctttcatacccttcattgttaagggaaatgctaccactctgatatatataaaaatgatgtaccattttc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0218500, RefSeq:Os01g0218500