Os01g0219100

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Revision as of 04:29, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0219100| Description = SFT2-like family protein| Version = NM_001048952.2 GI:297596336 GeneID:4324591| Length = 2784 bp| Definition = Oryz...")
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Gene Name

Os01g0219100

Description

SFT2-like family protein

Version

NM_001048952.2 GI:297596336 GeneID:4324591

Length

2784 bp

Definition

Oryza sativa Japonica Group Os01g0219100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:6524469..6527252

Sequence Coding Region

6524512..6524628,6524728..6524781,6525508..6525581,6525775..6525892,6525988..6526046
,6526916..6526994

Expression

GEO Profiles:Os01g0219100

Genome Context

<gbrowseImage1> name=NC_008394:6524469..6527252 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:6524469..6527252 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacgccctcacccgcctccaccgcgccctcgccggcggcgacgacgacgaggagcagccggaggattctatccttggcgacaccgagggcatatgctccctatcccctgtccagcgggtctacggcttcgccgcgtgcttggttgcgggactggctctgatgatcctgtcacttgtagttttcgtcagacccatcaaatttgcagtcatgtttacatttggaaacatcctagcagttgggagcacagctttcctaatagggccaagtcaacagttgaggatgatgcttgacccagttcgtgtgtatgcaacagctatttacggtggatttgtttttctggctctaatttttgctctttggatccattccaaggttctaacattgattgcaatcatatgcgagatctgtgctctgttctggtatagtttgagctacatccctttcgctcggcgaatggtgtctgacctgatggtgaagctctgtgacactgaactttga</cdnaseq>

Protein Sequence

<aaseq>MDALTRLHRALAGGDDDEEQPEDSILGDTEGICSLSPVQRVYGF AACLVAGLALMILSLVVFVRPIKFAVMFTFGNILAVGSTAFLIGPSQQLRMMLDPVRV YATAIYGGFVFLALIFALWIHSKVLTLIAIICEICALFWYSLSYIPFARRMVSDLMVK LCDTEL</aaseq>

Gene Sequence

<dnaseqindica>44..160#260..313#1040..1113#1307..1424#1520..1578#2448..2526#aacctcgcctttcgcctctccgattcaagccgacgaggcgacgatggacgccctcacccgcctccaccgcgccctcgccggcggcgacgacgacgaggagcagccggaggattctatccttggcgacaccgagggcatatgctccctatcccctgtccaggtaaacccaggaacttggacaatcccctcgaatgcaggatcaaatgtcttggggtttgcgtcgatctgattttgttgctcttcgccttggcttctccagcgggtctacggcttcgccgcgtgcttggttgcgggactggctctgatgatcctggtacgcacgcacgacgctgcaatttggtgcctgaaatgcaattcgttgtccgtacgggcttgcggctgctagttcctcatgtggatgtcgaattagctttgtaggtgttgctgtttccaccaacaggatcgtatacacaatgtatttaagcaaaaatagtagtatccgctatccaatgcctcttgggtggttatacggaaatatgtgatttgaaatttaggtttaccaaaatatcagcaagtttaaagtcctcaccagaaggggaaagaaacaaaaccaagtttcaagtgttctgacatatggtcactccgcagtctactctttaagaaaattggtttagctgcaattgtaaattattaaagttgcctgtctcaggaggcaggagcacatgatatgttttattgtctcagtcctagagaagtagtgctattgttttctcttaggtgcactgtagatcttcattgctaattgctatgctcacgagtactaatttgttggtttgatctaagataaataagacgatttgttaattgactgaattccacaggggcaaagaaatcacattattaggaaattaaaaccagatgctttactgttatagctaaaacttatagattctgtaagataatttagtggtagcaaacatgcctgcacttcaaattgttgattttgttgtgattactttgaaaattttctgagaagttacttttcatttttcctgtgcagtcacttgtagttttcgtcagacccatcaaatttgcagtcatgtttacatttggaaacatcctagcagttgggaggtgattacacagattttcactcatatatcatttttgttttcagattagcttagtgatatcccttatatttagtaccaaagtgtatactggttttgttttgtactactgatatgcatgtttagtcattgcattagtattactggttttctttttgaaagtttgccatatgttgacatgaacctttatttggcagcacagctttcctaatagggccaagtcaacagttgaggatgatgcttgacccagttcgtgtgtatgcaacagctatttacggtggatttgtttttctggctctaatttttgctctttgggttagtattatttatccaccatccttttccttatggacagattcttgtaagtaaaccacttaatcttgtgtttgccctgtgctttaattgtgcagatccattccaaggttctaacattgattgcaatcatatgcgagatctgtgctctgttctggtaagcctccttttcttaaaataatactagtgatttatgagtcttaacctattgttgtaatactgatgccatttgtaagtatgctttaattaaattgatataagctttacaaaaagattgtaagattagaataatattcgctgtgcttttgcatagagaagtggtaaacaaaactggcctttagttatactatgctaaccgtagcaacgccaggcacacatgtggttaattatctgtatttgagactggttttgatccttgagtgttctcatgtactgaatgcgcgttgagaaaacattagtgaactctgaactgatcttacaaatatcacgattctagaaaacattagtgactgcatgaatcaacttcaggtgttcatattaagtgtttgtctgacgttgccaaacattagtgctcagtcagtgcatgtacattgtggaatgttgaagcaacaaaaggcgaactctgcagaaacacgagggctgctgcctacatttatcttctgcatatcatgaatccataatctgagtcatcaacaggaaagaagtgtgtaggatgtttgctgtttgcgatggaggtgcagtagcaccacgaattaggatcacatgtatccgatacctcacttaggtactttttcgtgggagtttgaaaaattaacatagtttatatggtatatcatgaagctagatgcatgtctcttgacaccagaaatctccataccatgaaacaaattgtatttccaccccttctgtttttattttatgaaatggatcagtattgtttgtctgtttgtatctttatttctcactcttgtctcttgtgacaaattaactgatattggctccatattctcctctcttgcacctcaggtatagtttgagctacatccctttcgctcggcgaatggtgtctgacctgatggtgaagctctgtgacactgaactttgacctgatggtgaagttcatgggtagtatcaggatgccttaaggtgcttgcccatgttaatgcaatactgcttctcctcctccccagtattgtttgttcacctaagtccttacaatccagattttgtggatacacatacctttatgttttgtataaatgtattacatcatgcacttgttttttgtaacgctgtaagttcatatctgtctgaaattggccaaacaactgaggcatcatgtatacaaatttcttggctgcac</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0219100, RefSeq:Os01g0219100