Os01g0231900

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Revision as of 04:30, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0231900| Description = Predicted eukaryotic LigT family protein| Version = NM_001049034.1 GI:115435481 GeneID:4325894| Length = 6236 bp| D...")
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Gene Name

Os01g0231900

Description

Predicted eukaryotic LigT family protein

Version

NM_001049034.1 GI:115435481 GeneID:4325894

Length

6236 bp

Definition

Oryza sativa Japonica Group Os01g0231900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:7286954..7293189

Sequence Coding Region

7286988..7287013,7287175..7287232,7287842..7287983,7288195..7288406,7288524..7288561
,7288679..7288758,7288854..7288921,7290309..7290582,7291117..7291229
,7291310..7291375,7291593..7291683,7292150..7292217,7292565..7292602
,7292679..7292868

Expression

GEO Profiles:Os01g0231900

Genome Context

<gbrowseImage1> name=NC_008394:7286954..7293189 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:7286954..7293189 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgttggcttgcgcttccctcgcaaggtttagtcggctcgctcgccctctatgcgccgcgggttccgcgccgcgcttcctccagggatctgttaatcaaaatagtattcactcacttgtaatgaaaggtgcacaaggagcctcaaataattcggcaaaacacaagaaaagaaagtctgctgtgcagagatggaggccaatctccacagaagccgctgctccaaaagctgaccttaatgagatgtcaggtcctgtaagcaaacaagtggaagagaattcagcctcagatggaacaactaatgttgttattgaagtttccacctacaacgcatccttgccagaaaataaattagccacagaagatactatggaggatgctagcttcaataaggacatagataggtccaatctatctgaaaagtgttcctcttctgttcaggtagatgctcctctgatgcgctttgtgaaaggaaaaggtggaaccatgcagaagcagattgaagatgaaactggggtcaaaattatatttccatcttctaaggaggaaacatgtgttgttcttgaagctaaaactactgaagatattagaaaggcttcagagaaaattgcaaaggttcttgaagaggccgtgaaaagtccaatactagattactctcacttcatttcgcttccattggctatccacccaagccttgttgagaagctgaaccacttccagtgctcaatccttgggacttcttctaatgtagatagtgataagggtgaggacctaagtgaaggttctatggatgaaattgaccatgaacagaagcaagaaaggagccctagtgtttcaataaagatgcaagcccatgaggagtctgtcagagttaaaatggatattaagggctcccaaccagacttcggcattgacaagtcaatatttattaaacccaaaacctttcacctaacggttcttatgttgaagctatggaataaggatcgcattgctaaggcttctgatgtgctccagtcagtatcgtcccaagtaatggaagccttggaaaaccgaccaatctccatacaacttagaggtctgacatgcatgaaaggctcaccagctagggccagggtagtatatgctcctgtgctggaagttggtgaagagggacgcctacaacgtgcttgcaaagttataactgatgcctttgtcaagtcgggcctagtacttgaaagggatgcgaggcaagaattgaagttgcacgtgaccataatgaatgtgaggcacaggaagagcaagagatggaaccaaagaaacgactcattcgatgctcggaatattttcagaaaatatggggaacatgactggggcgaatacctcattcccgagatccatctttcgcagcgattcaagttcgatgaaagagggtactactactgctgctcttcaatccccttgcctgcggcggagatgcaaacggagtga</cdnaseq>

Protein Sequence

<aaseq>MLACASLARFSRLARPLCAAGSAPRFLQGSVNQNSIHSLVMKGA QGASNNSAKHKKRKSAVQRWRPISTEAAAPKADLNEMSGPVSKQVEENSASDGTTNVV IEVSTYNASLPENKLATEDTMEDASFNKDIDRSNLSEKCSSSVQVDAPLMRFVKGKGG TMQKQIEDETGVKIIFPSSKEETCVVLEAKTTEDIRKASEKIAKVLEEAVKSPILDYS HFISLPLAIHPSLVEKLNHFQCSILGTSSNVDSDKGEDLSEGSMDEIDHEQKQERSPS VSIKMQAHEESVRVKMDIKGSQPDFGIDKSIFIKPKTFHLTVLMLKLWNKDRIAKASD VLQSVSSQVMEALENRPISIQLRGLTCMKGSPARARVVYAPVLEVGEEGRLQRACKVI TDAFVKSGLVLERDARQELKLHVTIMNVRHRKSKRWNQRNDSFDARNIFRKYGEHDWG EYLIPEIHLSQRFKFDERGYYYCCSSIPLPAAEMQTE</aaseq>

Gene Sequence

<dnaseqindica>35..60#222..279#889..1030#1242..1453#1571..1608#1726..1805#1901..1968#3356..3629#4164..4276#4357..4422#4640..4730#5197..5264#5612..5649#5726..5915#gccgtctctgagccgcgcggcctccacaccacccatgttggcttgcgcttccctcgcaaggttcgttatccctctccccgcaacaacctcgatcgaaggaagccagtagaaattccaatcttttcctcgatcgaagcgcccggatcgtcgggggggttgcagctcctctgtctctctctcttaccaatggagtaatttatttctcctgtcgtctttgctaggtttagtcggctcgctcgccctctatgcgccgcgggttccgcgccgcgcttcctccaggtccgattcctctgcctccccacggtgttctcccccacaagaagcttccggttgttttatttttgttttgttttgtttcgtacatacattattgatacggatggataaatatctgagctagggttttaggaaccgatagaatttgtttagtctaattgaaccgcagtgtgtcaattgggagctagtaatggggatctttttttgggggattttgttgagaaaagtttatgccttgaggggcttatgctatcaattgattgaatcaagtatggttttgaacagctatgcaattgccatgtctctcttgagaaattccgtagctaatactttgtgttctaccctctgtatcgtgttcatctgctgcggtatgctgtggcggtccatgtttaacttaatgagttgtgtgtagcacttggcctggccttgagatcgaatgccaaccttgcaggcctgaaaattgtctaactctgcacggtaccaaaattttcagcaccttgttatctgcttctactagttcttttaatgcgtttgccttcatcagagcttctgtgatacatcacctcaatagtcaatatggtgttttacatgatagtactttgaccgtgacagggatctgttaatcaaaatagtattcactcacttgtaatgaaaggtgcacaaggagcctcaaataattcggcaaaacacaagaaaagaaagtctgctgtgcagagatggaggccaatctccacagaagccgctgctccaaaaggtaagccccatttgctacttgctactgctaataccttgactcaagatcatagtgcattcaaacctggatatgccctagtcatgattggacgctgctaatctatgatgctgtaaagataatatccatctatctctaaatttcctttccttaacttgtttgtgtatagcattgggtggcacttctgaatcatcctatattccacatgatgcagctgaccttaatgagatgtcaggtcctgtaagcaaacaagtggaagagaattcagcctcagatggaacaactaatgttgttattgaagtttccacctacaacgcatccttgccagaaaataaattagccacagaagatactatggaggatgctagcttcaataaggacatagataggtccaatctatctgaaaagtgttcctcttctgttcaggtatgctcggtggatatgtatgacaattaatgtatcttttccctgtaaaaagctcaatgtatgagtgatatttacttgtattcttttcaaatattcatgaattctgttcttttctaggtagatgctcctctgatgcgctttgtgaaaggaaaagggtattggtctcttgaacctgtttcagatatgcattatcctcaactatcctcagttgaggataatgctggcctgtctctctctgtgactgagaatcaatcgtattctttggcatgcagtggaaccatgcagaagcagattgaagatgaaactggggtcaaaattatatttccatcttctaaggaggaaacatgtgttggtaaagatatactgtttatttttcaaatatgcttgatgaaataagctgttggtaactttggaagctaatgtttgtgctatattgattattttcagttcttgaagctaaaactactgaagatattagaaaggcttcagagaaaattgcaaaggttcttgaagaggtacacgtgatgcactttttttaagataaaggaagctttattgatcttaaacaattacatcaagacaatacaattactctaagaccagtcccagcctctgcatgattaagatgcacacgacttacgattattacaaaagaaaagcggcacaacaacaaatatcatgccgcagcgaactacaaacacaagcgatcttcatacttgcacgcatgtggtgcactgctgcaatggcttattatttcctgatactctgtgcatgtatctatattaggcgtgggcagtaaaatcccgaagactgaaagccgaaccgacccgagccgaaccgaaccgaagtgtcgggtttttcaggcttcggtttatccttcggtttttattctgcatttgttcggtgtatggttttttctgcggtttccaatcctcacgaaccaaacaacccgagaaaaccgaaaccacacgttcacatcatatcccagcaacccagcctggtaacatgaaaggcccaacatctcctaaacaaggcacagagcccattagtttaacactactcgtatcttctcaagcggtcaagcctattcatcgacatctcgacatcgatctttgcacgcgcatggctggattggatggctaccttaacgatgctgccgctgccactgcatgcgtggacgattgcctcgggcagctgcatagctgccacatgcacacatcactcatagctggcagtttgctcagattgcaagttttatgactcctaccatgtgcgagggcagaaagcaacttctcccctctcgatttttatgaaccatctagcgattcatttgattatcgtgtgcttcggaattcatggaagatgttctcccggtttgttcggtgaaaccgaacaaccaaaccaaacaaactcggtttgttcggctcggttttttaccttttcaatagatacttcggttagcatatctgcaaaaccgaacttctaacaaaccgaataaaccgaggaaaccaaacgcccacccctaatctatattactatagcataatagtttgtggtgcttattacactaacattcttattcatttcctcctgatcatttaatgaaatatacaagctatgatagttatgagtgtcaaagtttaaaggccttactatgttaacaataatatatcaaagcacaaaaattgatgcaggatacctcttatatttcttgcagtagcactagactagtccaagttaaagttgtcaaaaggtgtaaagttgtgtctcccatcaccagtgagctactcacaaatataatctactgccacctgatttgataaagtcatgtttgaaatcctatttatgtcagctaatcatggttatcaccctggacggctgagctcctcctttttatttcaggccgtgaaaagtccaatactagattactctcacttcatttcgcttccattggctatccacccaagccttgttgagaagctgaaccacttccagtgctcaatccttgggacttcttctaatgtagatagtgataagggtgaggacctaagtgaaggttctatggatgaaattgaccatgaacagaagcaagaaaggagccctagtgtttcaataaagatgcaagcccatgaggagtctgtcagagttaaaatggatattaagggctcccaaccaggtctaaaagctttgctgattttcctgctatttcgttttatcggagttttcctattgtcaactctataaagtccggtttttggaactttctatagtacaagtcaattacacaactaagagggctggtgtgtttgtgaagagttagatgtgcagctctaatttttaatctgtcaagttgggaagttttgtattttaagttttatttcttatttttaacattccacactgttgattttggtggtgagattcaaacgattgtgagtaatattgcagatgtaacattttctagtatctctatgtttaacaatgtaataaataataaggcaagctaatgaatatttgaagtttggaatttaagaaaaaaaaaagttctcttgtttgccaagcaaatctcatatctgtattttgttttgtaaattttgtttgtacacctgtggcatattgacggtactagatgcattgcttgttatgcaatttccaaattacaagttctatgctcttcaggcattgaactaagctttcttatcatttgtagacttcggcattgacaagtcaatatttattaaacccaaaacctttcacctaacggttcttatgttgaagctatggaataaggatcgcattgctaaggcttctgatgtgctccaggtaatttccgtttccagattattgtggtttattgtctgagatgacagtgagcaacttaatgtgttaccttgtggatacagtcagtatcgtcccaagtaatggaagccttggaaaaccgaccaatctccatacaacttagaggtctggtgagttgccattctcgaatagttctggctggaagctcattcatgcatacatctagaatagcaaatgtagataattcgagccagagaacaaaatatttgttcctaaacacattgttgctgcaaaccacattttaatacctgtttataaaaggtatctgtactgtttctcccaccttttccaataattcaaagttccaatgagaatatttcattccagacatgcatgaaaggctcaccagctagggccagggtagtatatgctcctgtgctggaagttggtgaagagggacgcctacaacgtgcttgcagtatcctttgaaattctgatgattgatgagaaatcagtctatttaatatggatctttagaatttcctaagaagcaatctgtgcttatagatgtaacttgttagtatctgttaataaacattcttggtgacataccaagtgaagacctgtgtttgtgtacctcttgcagtcacatgtgcactgtttaagattcctttattgatggagtgttttttttttttttttttggggggtgggggggtggggtttaggtagtaggaagccctcataaatcatgtattcaacgtttgaggagggtactgtaaaaaatagtcgtggtattactatattaggttttcatgactgtaatgtatccatcacttaacatactgcccacatgacaagtttgcataattgcacttacattagatgagttccaatcttctttatgcaaaatggttctccttcacttcctttcactttatcagaagttataactgatgcctttgtcaagtcgggcctagtacttgaaagggatgcgaggcaagaattgaaggttagtaaatatatatcaaagcactgttcttgttagcttcattgacatcggcatgtagttctttgaagctaattgttgctatgaaatcattggcagcagcgttgttcactaaaagcatattgaaatggcagtagcatctgcttgttgataactgtagtccagtttgatttcaatgatgagtctgaaatgcacattttatttcttatttctagaaaaacttcatgattaacttcagcacttccattactattctggactatttttacaattgtttgagggaaatgttatgcattgctctgaaacagcaatatttgatgctaaaattgctgttttcttttcaacttcagttgcacgtgaccataatgaatgtgaggcacaggaagaggtgattctctcttcatcttgataattcatggtctatgtactgccggcttaacttgactaccttgttctcgctgcagcaagagatggaaccaaagaaacgactcattcgatgctcggaatattttcagaaaatatggggaacatgactggggcgaatacctcattcccgagatccatctttcgcagcgattcaagttcgatgaaagagggtactactactgctgctcttcaatccccttgcctgcggcggagatgcaaacggagtgagtttcataataaacacattttcagtgttttcaaatctttcaccagtatcatcatcccattaggacgacttcgcgggttactgttgctgaaccaataatgtgccatgtgttgtgcttgttttgttctggagtgtggcatgctcagtctactcggttgatataggcctttcttttgatagtgggatagccggataggcaattatgcatcatgctgtggacctatggtgttgtcaatggcagtgggctccttggagtggttgatgtaagtttctggtctggcccgtgtacaatcacgcctgcaattttctctgtcgttgccctg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0231900, RefSeq:Os01g0231900