Os01g0232400

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Revision as of 04:31, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0232400| Description = Similar to VHS1 protein (Fragment)| Version = NM_001049038.1 GI:115435489 GeneID:4324279| Length = 5355 bp| Definit...")
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Gene Name

Os01g0232400

Description

Similar to VHS1 protein (Fragment)

Version

NM_001049038.1 GI:115435489 GeneID:4324279

Length

5355 bp

Definition

Oryza sativa Japonica Group Os01g0232400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:7332807..7338161

Sequence Coding Region

7332960..7333166,7334491..7335249,7336267..7336422,7336595..7337518,7337709..7337744

Expression

GEO Profiles:Os01g0232400

Genome Context

<gbrowseImage1> name=NC_008394:7332807..7338161 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:7332807..7338161 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggatcagagcaggcgggcggtggagtcgtactggaggtcgcggatggtggacggcgtcacggcggacgacgacaaggtggcccccgtctacaagctcgaggagatctgcgagctcctccgcgcctccgacgccagcgtcgtcaaggaggtcgctgacttcgtcctcaagcgactcgacaacaagagccccgtcgtcaagcagaaggctttgcggttgattaaatatgctgttgggaagtctggtactgatttcaagcgggaaatgcaacggcactcagcagctatgcgccagcttgttcactacaagggacaccctgaccccttgaaaggggattctcttaataaggctgtccgtgaaactgcaaatgatgccattgctgctattttctccacagaggaacctaaacctgctgttgcaacagaaggtcttggcaagcgcatacagggttttggaaatactaattttgagccatcaagagatgacaaaaaatctttccttagtgagctaagtgaagtagtgggcattggcagtgcttccattaaacagggtttgagcaactttgctgcttctcattcatcaatgataacaaatgataatggtggtccgtacaagagcccaaaccttcgtaggtctctgaccacagaaatggataaatatggcaggtatgatccaagtgaaattcaaggcgagagccgttcttcatctggtgcttcaaagaatgttagttctggttcatggggtcctagtccatccagttctgcaccaactgatgatactggttcaagtcaaacaggggttaagactcgtgaagagagacttttagatacaattgcaacttcaagtggtgtgcggttgcaaccaactcgagatgctctgcaaatatttctaacagaagctgccaaattggacgcagttgctttgagccgtgcccttgagaacaaattgaattctcctttatggcaggttcgcatgaaggcaatttgtgtattggaagcaattgtaaggaaacaggatactgatccttattcaatcattacttcatatttctgtgagaacagtgcatctgttgttagatgctgtgagcttccgcacgtttctctcagagaaaaggcttcgaaggtcttaaatctgctggttggggaacaacctactggaagcaataatttttcagaaacaaagacaacagtacctgctgcacagatgcctgatttgattgatacaggggatcaagatgacccaggagctcaaaattcagctcaggaaggtagcgagaggataatggggaatagcatgtttacttcttcggttgatgatttgctgggtggtgaacctattgctgatataagtaccaccaccagtaatggtaatggaggtgatccgtttgcagacgtttcattccatgagacagcagatactaaggatactaacgacctattctcggggatgacggtagaagaaaaggcaacagcagccttgcatgatagctcatcaataaacaaaaatgaattgtcagatatatttggcagcagccctgagccattcttccaagaaagagtagaggataaaggaaccgtgaatgatttgatggctggtttgaaccttaatggaactgcccaagctcagcctgggattaaaacagaatctaacaatactgtcaatgtttcacagctctttgacatgaacagtcagacaacaaatgtggctaattctgcagcaatgactggtattcttggccaaagcttttatcagcaacagcaggttcccttgcagtacaacttgccatcacagatgctgttaaatccagcatttgctgggcagcaattaaactatggtgctatgagtgttcttcttgctcagcagcagcagctgctgcaaaatctaggaaatttcaatgctgggttgggacattcgtctttgaatgcaatgaacagcggaaatgcatctgtgcttcctgatatcttcaattcaagtaaccaacctcaacatgttgctgtgatgagcaactcaaagaaggatgaaactaaagcttttgattttgtttcggatcatcttgcagcagctcgtggttcaaaaaagtaa</cdnaseq>

Protein Sequence

<aaseq>MDQSRRAVESYWRSRMVDGVTADDDKVAPVYKLEEICELLRASD ASVVKEVADFVLKRLDNKSPVVKQKALRLIKYAVGKSGTDFKREMQRHSAAMRQLVHY KGHPDPLKGDSLNKAVRETANDAIAAIFSTEEPKPAVATEGLGKRIQGFGNTNFEPSR DDKKSFLSELSEVVGIGSASIKQGLSNFAASHSSMITNDNGGPYKSPNLRRSLTTEMD KYGRYDPSEIQGESRSSSGASKNVSSGSWGPSPSSSAPTDDTGSSQTGVKTREERLLD TIATSSGVRLQPTRDALQIFLTEAAKLDAVALSRALENKLNSPLWQVRMKAICVLEAI VRKQDTDPYSIITSYFCENSASVVRCCELPHVSLREKASKVLNLLVGEQPTGSNNFSE TKTTVPAAQMPDLIDTGDQDDPGAQNSAQEGSERIMGNSMFTSSVDDLLGGEPIADIS TTTSNGNGGDPFADVSFHETADTKDTNDLFSGMTVEEKATAALHDSSSINKNELSDIF GSSPEPFFQERVEDKGTVNDLMAGLNLNGTAQAQPGIKTESNNTVNVSQLFDMNSQTT NVANSAAMTGILGQSFYQQQQVPLQYNLPSQMLLNPAFAGQQLNYGAMSVLLAQQQQL LQNLGNFNAGLGHSSLNAMNSGNASVLPDIFNSSNQPQHVAVMSNSKKDETKAFDFVS DHLAAARGSKK</aaseq>

Gene Sequence

<dnaseqindica>154..360#1685..2443#3461..3616#3789..4712#4903..4938#gctcacccgcgccgcccacctcccctcccctcccctcctctcctagacccggtccaccgccgcccctctcagatccgccgttgccgcggcggcctcggcagctcggtctccccccgctagggtttcgccgtctccgatcggaggggcgcagcgatggatcagagcaggcgggcggtggagtcgtactggaggtcgcggatggtggacggcgtcacggcggacgacgacaaggtggcccccgtctacaagctcgaggagatctgcgagctcctccgcgcctccgacgccagcgtcgtcaaggaggtcgctgacttcgtcctcaagcgactcgacaacaagagccccgtcgtcaagcagaaggttccccttctcctcctctctctctccccttgtgtgatctcgggtgcgagggtattaggtgggtggcggcgaggtggatcgatcgatcgatcgattgagtacttatggattggtgttcttgtgttctcattgatgatgatgatgattagttctgtggccacggttcttgtcgaactctggatggtcgaaggatggcgcacgtatccggggagtgatttgagtgggtgactgatgatttgtgtgattgttttgagttcatgcctgcctcctggattgccgatcagttgaggggagaagaggctgtcgaagatatagttctgttttggccttctggatgtgggtttaataagggaaacggcgaaagtagggaattgcagttgttgaatgaaatagttattggttgtgcgccacagcccctagcataaaagagcagtgccttggtgaaggtgtaagggagaaactggctatatatttttgttcttcactactaggtggcaacaatatcttgctcacagctcacctggagttgatggcctgttaccgtggattcaaattagctagaatggattcatgtgtcatagtccctatcaattgaaatttaaaactagcctactgcttcttgaagagctgagaatattctccacatccaactatctggcatgtaactgttccatatcgactgagaccttagtggcttgtatggttgtttttggtgaatgctgttttatagagcagaagccttatgtggctaatgaactacaacaattgttatagctatggaccaatggaaggtgtttttttgtaaactatggtgtctacttttgatttggatttaagggatgttttttttttttgggggggggggggtttaatgctgaaccaaacacatacatttgaggttgtttagtgaacttgaatgtgaattcagatttcaacttgtgacaactaattttaattttataaatgaattgctttacattcatggcatgttgcgttctgactcctgatctcgtaatggtaaagctcataccagccttctgagtagactctctgcgcaaaggaaatgctgcttatgggcataatatttgctttgctaagcatttgtactgaatgttacacgtcagtcctgagcagtggcacattgcaccttttgcaaacatggtgacccccacatatatcatagaatgtaccctaatgtttttgatggaatttttaggctgtcctaacttatgtctaacatttaagtacagtggtgtttaattattgaggagactagcttctgttcttcaattctgtactaaccttttcaattgctcttttccaggctttgcggttgattaaatatgctgttgggaagtctggtactgatttcaagcgggaaatgcaacggcactcagcagctatgcgccagcttgttcactacaagggacaccctgaccccttgaaaggggattctcttaataaggctgtccgtgaaactgcaaatgatgccattgctgctattttctccacagaggaacctaaacctgctgttgcaacagaaggtcttggcaagcgcatacagggttttggaaatactaattttgagccatcaagagatgacaaaaaatctttccttagtgagctaagtgaagtagtgggcattggcagtgcttccattaaacagggtttgagcaactttgctgcttctcattcatcaatgataacaaatgataatggtggtccgtacaagagcccaaaccttcgtaggtctctgaccacagaaatggataaatatggcaggtatgatccaagtgaaattcaaggcgagagccgttcttcatctggtgcttcaaagaatgttagttctggttcatggggtcctagtccatccagttctgcaccaactgatgatactggttcaagtcaaacaggggttaagactcgtgaagagagacttttagatacaattgcaacttcaagtggtgtgcggttgcaaccaactcgagatgctctgcaaatatttctaacagaagctgccaaattggacgcagttgctttgagccgtgcccttgagaacaaattgaattctcctttatggcaggtgactttacgatgttctttgttcatctacttcaaccttacaagttacaatagttttacggctatgggatggggtacctttagtctatattatggtttacactgcttctggcaagtgactagtgtatattgatgcacaaatcgatattttttcttattccgcagtcaaatggaagtactttggatatctaatatatagatactttaaacatatgtttgttcaaattttgacaagtgcttattgagatttcaaacttcaaaagtaaaaacactatttatgagttgacttgtgaccattcacatatacttttttatggtaaaagttcagagctgtatatataatagtgagtggtatgtaaacatattgatgcttaacttagcttccaattttcaggacagcatagtttatttgaataataaattaataacatgtgaaaaatacagttccggcatgaactctttgcatgttaaaagtgcttagttaagggcttttacacccgcctccctactttgcggtttaggacatgtcttagcgtatttaaagatttacccagtaggcagcatactggttctgaaaaaaatattaggcagtgggcagcatatccttttaacatggtcaaaggaatcaaaatgttttgccttgttatacattccaattatcaatggaagtccacctagcatctgaattttaaaaccaggcatctaacttctcaatacttccataaaaccccctgaagtggttttgcatggtggtttcacctataaccccatgaactttcattggaataaggtttatttctactaggggttagcaatacggagtatgttcagaattagtgcattcattatctatgatgttctctgaccttttcttatatttttgatacaatattatctcacattatttatatacatgattagatcatatttataataccattttatcttgaccaagcacttccaccattgttttcactttatatattcataaatattcaatgcatttgttctacttcaggttcgcatgaaggcaatttgtgtattggaagcaattgtaaggaaacaggatactgatccttattcaatcattacttcatatttctgtgagaacagtgcatctgttgttagatgctgtgagcttccgcacgtttctctcagagaaaaggcttcgaaggtcagtaaagttgcaagccattaataaataaatttgtataatgcaccatttattttctgcaaattgctatgtagaatacatgctttgcatctctttgattctatctctctctaggctatagctatttccacctccaattattactatataataaaccgtgccattttcttaggtcttaaatctgctggttggggaacaacctactggaagcaataatttttcagaaacaaagacaacagtacctgctgcacagatgcctgatttgattgatacaggggatcaagatgacccaggagctcaaaattcagctcaggaaggtagcgagaggataatggggaatagcatgtttacttcttcggttgatgatttgctgggtggtgaacctattgctgatataagtaccaccaccagtaatggtaatggaggtgatccgtttgcagacgtttcattccatgagacagcagatactaaggatactaacgacctattctcggggatgacggtagaagaaaaggcaacagcagccttgcatgatagctcatcaataaacaaaaatgaattgtcagatatatttggcagcagccctgagccattcttccaagaaagagtagaggataaaggaaccgtgaatgatttgatggctggtttgaaccttaatggaactgcccaagctcagcctgggattaaaacagaatctaacaatactgtcaatgtttcacagctctttgacatgaacagtcagacaacaaatgtggctaattctgcagcaatgactggtattcttggccaaagcttttatcagcaacagcaggttcccttgcagtacaacttgccatcacagatgctgttaaatccagcatttgctgggcagcaattaaactatggtgctatgagtgttcttcttgctcagcagcagcagctgctgcaaaatctaggaaatttcaatgctgggttgggacattcgtctttgaatgcaatgaacagcggaaatgcatctgtgcttcctgatatcttcaattcaagtaaccaacctcaacatgttgctgtgatgagcaactcaaagaaggatgaaactaaagcttttgattttgtttcggtatgcgctttcatcatgtccctaatttattcttatttcatttcatatatagacgtgccaatattaccaactgtcataatgcgtgggcagtatgaatctatggctctatgctagttgcataagatgttacttcagtttttgacatctgaagcaccatcctctggtgttaacagtcctagttttctttcaggatcatcttgcagcagctcgtggttcaaaaaagtaacccgagagcgatgggtatgttcagaatgtagcaacaatgcatttgtttggcttcacgcaaacttcactcgtactccatcgattagctggatcaatctcaggacaggttttgcatgttgtgctgcaacagatgacccaagaaagaaagaaaagaattcacgacgggggattgtgttgtatcatgtatctagacaaatgtcgatttttatgttgaaataagctgtacttatcttctcagtttcttttgatgccttgcctttttttttttcttttaaagagtcggacattgtagattgttctcgggcgggattttgtttttgctgctgtacaacagcatatttggttcttttgacgggaattgtaaagcttgctacgttaataacaggtgccatacgggaataatgatgcctcttgaacc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0232400, RefSeq:Os01g0232400