Os01g0234900

From RiceWiki
Revision as of 04:31, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0234900| Description = Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5). Splice isoform 2| Version = NM_0010490...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os01g0234900

Description

Similar to Ubiquitin ligase SINAT5 (EC 6.3.2.-) (Seven in absentia homolog 5). Splice isoform 2

Version

NM_001049053.1 GI:115435519 GeneID:4327774

Length

2748 bp

Definition

Oryza sativa Japonica Group Os01g0234900, complete gene.

Source

Oryza sativa Japonica Group 

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:7449916..7452663

Sequence Coding Region

7450124..7450483,7450617..7451003,7451935..7452231

Expression

GEO Profiles:Os01g0234900

Genome Context

<gbrowseImage1> name=NC_008394:7449916..7452663 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:7449916..7452663 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggacgtggacagcgtcgagtgcctgtcgctgccggactcctcctcctcctccggcgccggcgccggcggcggagggggtgggggtgggggtgggggcgtaggcgccatggatgcggcggacgacgtcggcctcgcgctgcacgcgcacggcgcgctcctggcggccgcggcggccgcgcgggcggcggcgtgctccaagggagggggagggggaggcgcggcggccgggagcggcgtgcacgagctgctcgagtgccccgtctgcaccaactccatgtacccgccgatccaccagtgccaaaatggacacactctgtgttccacctgcaaagctagggtgcacaaccgttgccctacatgcagacaagagcttggtgatatcaggtgtttggccctggagaaagtagctgaatcgcttgagcttccctgtaagtactgctctttggggtgcccagagatcttcccatactacagcaagataaaacatgaagcgcagtgcatgtttagaccatacaattgcccttatgctggttctgagtgtgctgtggtgggtgatatcccttatcttgttgcccatttgagggatgatcacaaagttgatatgcatagtggttgcacattcaaccatagatatgtcaagtccaacccacgagaagtcgaaaatgccacctggatgctgacggtcttccactgtttcgggcaatacttctgcctgcactttgaggccttccagcttgggatggcaccagtctatatggcctttctccgtttcatgggtgatgaaaatgaggcaaggaactatagctacagccttgaggtcggcgcaaacggcaggaaaatggtatgggagggcaccccccgaagtgtccgggacagccaccggaaggtgcgggacagccatgatggcctcatcatccagaggaacatggcgctgttcttctcggggggcgaccgaaaggagctgaagctgaggatcaccggccggatctggaaggagcagcagaccccagacggtgcctgcataccaaatctctgtagctaa</cdnaseq>

Protein Sequence

<aaseq>MDVDSVECLSLPDSSSSSGAGAGGGGGGGGGGGVGAMDAADDVG LALHAHGALLAAAAAARAAACSKGGGGGGAAAGSGVHELLECPVCTNSMYPPIHQCQN GHTLCSTCKARVHNRCPTCRQELGDIRCLALEKVAESLELPCKYCSLGCPEIFPYYSK IKHEAQCMFRPYNCPYAGSECAVVGDIPYLVAHLRDDHKVDMHSGCTFNHRYVKSNPR EVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENEARNYSYSLEVGA NGRKMVWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRITGRIWKEQ QTPDGACIPNLCS</aaseq>

Gene Sequence

<dnaseqindica>2181..2540#1661..2047#433..729#ctcacaaaatttactcgccggaaaacccaaaagaacggaaaagaaaaaaaaagtcaggcagtcgtcgccgtgctcgccgcggcggggtccatcggtgtcgccggcgccaccaccacaacccagacgaggggagacggcatccaggatccagcaataatagcgcgtcgcggtggtcgtcgtcctcacctaatcccccccccccctccccatccatctattctcagccaaaagctcccctcttctctctctccctctccctctcgctttcgtttccctttttacccccgcaatccgcggcgcgccaccgccacaacaaagcccccgctcgccggagcaggagccgccccccccccccggtgcccacccgccgtgccccccaattcctccccgttcgtggcaggcgggggtgcgggcgcgggcgcgggtgcggccatggacgtggacagcgtcgagtgcctgtcgctgccggactcctcctcctcctccggcgccggcgccggcggcggagggggtgggggtgggggtgggggcgtaggcgccatggatgcggcggacgacgtcggcctcgcgctgcacgcgcacggcgcgctcctggcggccgcggcggccgcgcgggcggcggcgtgctccaagggagggggagggggaggcgcggcggccgggagcggcgtgcacgagctgctcgagtgccccgtctgcaccaactccatgtacccgccgatccaccaggtgaggttctcgcttgattccgcgctcgcatacgcgtcgtgtgggatgcgatccgtggggggttcggaaaagagggggggggggggggatctgtgtgcgtctgggcttgggagcctcggaatcggggttgaattttagagcgaaacaaagagaggaaaatgtcgttttcgccatgcctgtcatgatttgattcctcttgtgattggagcatcatatccaattcgatcattgatacaatgatactggcacaatggggggtagacttcctgttggtcgttcagaatttcctgggatcttggtgttctctgggctcccgattggtgttgtgtattcctgaataatttcggtgatctgttctgttattctcgtgcacgaattgctgacttagcttatcgatcggccgattattgttcaattcctgcattatttttctagtaattatagagctcctttttgacatatagtcgatgcctaagaagaagcaggaatgttgaatcttgcgaatgatcaactgttagaattagatggctaatatctattataatctggaatgagctgccaaaataatcatgccttcaggtcattcggtttatctttagcagaatttataaaaaatagtagtacctttaacatttagccatggtgagttttcccttttagcacaagttataaaagggaaggaagacgacggtacttgtgaagtatatatgttgggtagaagtatagaacttaattaacctaaaaatggatcattcgaagatccttagagaatacatgggctgaatttcaataagcaattctaaccatacactccctttcccaattcgttgtgtcagattgatctagtggtgtaaacctgaagagtctcattatgtagttctgaacttctgatctttggatatgattctcatctctttgaatttcattgcagtgccaaaatggacacactctgtgttccacctgcaaagctagggtgcacaaccgttgccctacatgcagacaagagcttggtgatatcaggtgtttggccctggagaaagtagctgaatcgcttgagcttccctgtaagtactgctctttggggtgcccagagatcttcccatactacagcaagataaaacatgaagcgcagtgcatgtttagaccatacaattgcccttatgctggttctgagtgtgctgtggtgggtgatatcccttatcttgttgcccatttgagggatgatcacaaagttgatatgcatagtggttgcacattcaaccatagatatgtcaagtccaacccacgagaagtcgaaaatgccacctggatgctgacggtaagtacctatagactgtggcgctcttgttattcttatttgaactataataccttcgtggtagatataagattatcttgtggaaattgtattatagaaatattgaaacattgaattgctgtcttgtgagtaggtcttccactgtttcgggcaatacttctgcctgcactttgaggccttccagcttgggatggcaccagtctatatggcctttctccgtttcatgggtgatgaaaatgaggcaaggaactatagctacagccttgaggtcggcgcaaacggcaggaaaatggtatgggagggcaccccccgaagtgtccgggacagccaccggaaggtgcgggacagccatgatggcctcatcatccagaggaacatggcgctgttcttctcggggggcgaccgaaaggagctgaagctgaggatcaccggccggatctggaaggagcagcagaccccagacggtgcctgcataccaaatctctgtagctaagcaatcacaacattcagaagaaacaaagaaactcaactccactttgcggccggataacatctatcccgttgccatgtcttactgtttttttgtatgctccgaggcaacgccttcatgttgtacctttgctaaacaaacattaggagggtaggacgctcttgtaaagtaaaatgtgtgtatatggcaccccatatcttacaggttggct</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0234900, RefSeq:Os01g0234900

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0234900&oldid=25201"