Os01g0235200

From RiceWiki
Revision as of 04:31, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0235200| Description = Conserved hypothetical protein| Version = NM_001049055.1 GI:115435523 GeneID:4327777| Length = 5150 bp| Definition ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os01g0235200

Description

Conserved hypothetical protein

Version

NM_001049055.1 GI:115435523 GeneID:4327777

Length

5150 bp

Definition

Oryza sativa Japonica Group Os01g0235200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:7459330..7464479

Sequence Coding Region

7459519..7459528,7459824..7459906,7460849..7461074,7461332..7461652,7461730..7461921
,7462034..7462268,7463837..7463951,7464091..7464165

Expression

GEO Profiles:Os01g0235200

Genome Context

<gbrowseImage1> name=NC_008394:7459330..7464479 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:7459330..7464479 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcggttcaatctgcagagcgcggcgtggaggctccacctctgacgctgtcgatattcgagttcaacagtaaggtgatgcaggacgagctgcagaagctggcgctcaaggtgaaccaccacgaggagaacatcaggtttctcaagtcggagctcaatgccgtcgaggactcgtgcgctgacctgggcattaaaataggcaattattattcatcgatggcggcaattgcaaataatgacacatctgttgaagaagctgaacaacgcactattcaaagtatactcaaacaggacgagacagcagctgggattatatgccaactgaagattcgtcattatcagcatgcatcaaagctgccactgatgaaagatgtccttggtgtcgtagctaccttgggaaaaataaataatgacaacctcagcagggtactctcagagtacttgggattggacaatatgcttggtgtcgtctgcaagacttatgatggtgtcgagggtcttgaaacatatgacaaggaaggtatggttgataaaaccagtggcattcatggactaggtcgcacaattggaaaatttttagatggaagattcactgtcttttgtcttgaaaatataaggccattttctggtgattttatgatcgatgatcctcagaggaaacttcttttgcataaaccaaggttgcctagtggagagttcccacctggttttcttggttttgcagtaaatatgatacatttggaccaggcaaatttgagttgtctcacagctgggggccacggtcttagggaaactttattttacagcctgttttctcagttgcaagtctataagactagagctgaattgcgaaatgctattcctttgataaatgatggtgctgtttctcttgatgggtctatactaagacctaatggctcattctgcctaggtaatagggcaagcttaggaatacaatttcctgtaactgcaaatcttggggtctcaaacttacccgtaactatcactgaactggaggagcaagttaaacataagaattgggaaaaggaaaggcttctcgaggatataaaaagacaagaagatttgttgaaccaagttaaggatttgttcagcaagaaaaaggaacagttcatggcttatatcactcaaccaggaatgttacagagagcatcgcaggcttcaccgacaattccttcaccagctactcctggaagcaatccatttggatcaaggcctccccacctgcgaggaagataa</cdnaseq>

Protein Sequence

<aaseq>MAVQSAERGVEAPPLTLSIFEFNSKVMQDELQKLALKVNHHEEN IRFLKSELNAVEDSCADLGIKIGNYYSSMAAIANNDTSVEEAEQRTIQSILKQDETAA GIICQLKIRHYQHASKLPLMKDVLGVVATLGKINNDNLSRVLSEYLGLDNMLGVVCKT YDGVEGLETYDKEGMVDKTSGIHGLGRTIGKFLDGRFTVFCLENIRPFSGDFMIDDPQ RKLLLHKPRLPSGEFPPGFLGFAVNMIHLDQANLSCLTAGGHGLRETLFYSLFSQLQV YKTRAELRNAIPLINDGAVSLDGSILRPNGSFCLGNRASLGIQFPVTANLGVSNLPVT ITELEEQVKHKNWEKERLLEDIKRQEDLLNQVKDLFSKKKEQFMAYITQPGMLQRASQ ASPTIPSPATPGSNPFGSRPPHLRGR</aaseq>

Gene Sequence

<dnaseqindica>4952..4961#4574..4656#3406..3631#2828..3148#2559..2750#2212..2446#529..643#315..389#ctctgtcgcgcgcgctccttcctcccgtctcctctcctctcctccgctcctcgcgcgcgccatctcgcggaggggatcctggtgagcatcgcacttcctctctctgattcatctctctctcccgccctcgattttttcgcttgcgttcgttaaccctagcttctcttgtagatctgcaagaagttcttctcttaatttcagagccttaataacagtttgagtttgtttgttcccccgcaaaaaagagtttgggggggttcaattgaagttggatccgccgcccctgcagatttggtcgcctagcttccttacctatggcggttcaatctgcagagcgcggcgtggaggctccacctctgacgctgtcgatattcgagttcaacagtaaggttgtgtgtgtgtgcgcctccggtgacggtgatgccgcccgccgcctgttgatccggttcaatgctttttgttgatgcgagcgagtatgggaattcttcgtgtctgatattgggtgtgcgcgcgcgccttgctctgcaggtgatgcaggacgagctgcagaagctggcgctcaaggtgaaccaccacgaggagaacatcaggtttctcaagtcggagctcaatgccgtcgaggactcgtgcgctgacctgggcagtgagatcctaatgccctgtgacaccttgcttttgtatatacttttaatttacggattcgtggttatattcgtgtactctagtaatgctatatatcggtaccatgatgcagaataactgcgtagatcattaattaaacactatagtgaataattcgagccttgcgatacctagtttctggtaaataaggcctgttaattattaactatggagcttgtggtcattaatttttagtatgtcagatatattttctgtaaacttgagttttatatgtatgttcaagttggccagatgtggagtcatggatctgtgaagaggatgaatgacccatatgttggcatgaaaatatttatgagaggagggatggggtgtgaaaccaaccatcaccaacttaaatatttaaaacagtgaaaatacctaaatgtagttagtgatgtcatcggaagaggaactcgcagtatttgggatgaatgagcatccttgtgagtggattgcattgtcctgtactttggtacacaatggaggatagctactgttagatgtgaccagtaggcatgggttaatgtagaaagagctaagatagcaaaggtactcagtggaggtagagagagatagagactcaacagtcaacatgaacaggtctgttgagccgttgtttgcccaatagtagctaatgtcttggtttactttatactagctctactcctttttacttgatgttttgggcatcaatacagtatccaatgcatatgtttgataattaacatttctaataatatatttataaaaaatattaagaatataattgcatgaaagtgtttttcatggtgaatctgtaatatcaattttttttgcatattagtatatcttaatatttttgtatatattgatgatttaaattttgaggttgactatacacattctgagacggcatctatttaagaacagggggagtatatgataagctgtaacatgtgtaggaactgatacaccctaatgcaataattctaatgctgacaagcaaatctgacataccttggtagaggtagaccaaaaaaacttgcgttctaattcatgtcttacttactacccatgcttatcctaaggtccatatggcaagccaactgtggcatttgctgcttctgcgtgtgtgcctttaggtgctagtgtgctactacttcgcatgacatatgcatctatctaaatcaattgaggcctctttgagtagaacattggaagttggttgttgagacaacatctctgcattagtggtaggactagcaagctattgcaaaatctttttattatcacgttggaaattgaatctttttgcatgagcctaacatatccaccattcctattatctaatgttcttagcaccattggattattgcattagatggctgtggtaaatttgaatttatcatgcaagtaacaccatttggataaagatatcaaagctatctataattccatatactctttctttaactcatttccataattccatatactttttctttatcttattgcccctatttatatgctgaaccctggaacttttctcagttaaaataggcaattattattcatcgatggcggcaattgcaaataatgacacatctgttgaagaagctgaacaacgcactattcaaagtatactcaaacaggacgagacagcagctgggattatatgccaactgaagattcgtcattatcagcatgcatcaaagctgccactgatgaaagatgtccttggtgtcgtagctaccttgggaaaaataaataatgacaacctcagcaggtcattattctctctttgttttgacatataataagatttattgcaccaactggtgcaaagttaatgggcagaattatttgtttacttttgaggtaccatgaatttgttatagggtactctcagagtacttgggattggacaatatgcttggtgtcgtctgcaagacttatgatggtgtcgagggtcttgaaacatatgacaaggaaggtatggttgataaaaccagtggcattcatggactaggtcgcacaattggaaaatttttagatggaagattcactgtcttttgtcttgaaaatataaggtgtgttttcattgtgccgttatattttggactctactggatggacaccttaacattataactattacactttgcaggccattttctggtgattttatgatcgatgatcctcagaggaaacttcttttgcataaaccaaggttgcctagtggagagttcccacctggttttcttggttttgcagtaaatatgatacatttggaccaggcaaatttgagttgtctcacagctgggggccacggtcttagggaaactttattttacagcctgttttctcagttgcaagtctataagactagagctgaattgcgaaatgctattcctttgataaatgatggtgctgtttctcttgatgggtctatactaagacctaatggctcattctgcctaggtaataggtatgcaattatatggatttatcctttaacatcacatcatatacttttatttgatcattagtgttctgcatattgtgggtccttcggtgatatttaattgtcctttcattttatgagtatatgcgtgatacattaccctggtttgcttactacataaagtctggtaacactaatttgcactgttctgtaacaagcatattaagcttaattccacctcttctttttgttaatgattatacatgaccttacttttgaagggcaagcttaggaatacaatttcctgtaactgcaaatcttggggtctcaaacttacccgtaactatcactgaactggaggagcaagttaaacataagaattgggaaaaggaaaggcttctcgaggatataaaaagacaagaagatttgttgaaccaagttaaggatttgttcagcaagaaaaaggaacagttcatggcttatatcactcaaccaggaatgttacaggtgaacttacaatttattctgttattttcttgactgtactaatttattagtaatttattgtcatccggagttacagttagataatgaatagaattctctatttctatgaagtgccactgtagcaagtacacatataggtcgcttgcttctaacaacggaggggaggccggactgctggaggggtctgctagagaatctaatacacttagcttttttaatattttttttccaaaactagatgtttgtaggatgcatgtagctgccttgtcactttgagagcaaatgggaggtcagacgtgtcttctatctgatacgctaagcttggtttttgtttttcctgaaactagatgtaggatgcaggtagctgccttgtgagagcaaaggggaggccagaggggtcttctagatagtatatgttccattttgaagaaaagaacttgtttgatgatataagaagtataactttgttgctgcagtcaattgatgatcgtttgtttgatcaaattgtggctgattgaatggaagtagcatgtgcattagtgcatagcaggatccacatccattctatggcttatgttagcaatgttaacttacatatgaactagcatctaatattgtaacatactagtacaagctatacttctgttaagacacctgaagagcaatactgtaaattattgtccatatattcttcttggatagggtaaaatctcagtcagctaactatttaacttgcccgtgtggaaactggcgaattctaggatgaggtccaggttcaaattgtttctttgaggataaattgcatttaatttatacttcatttgtgcccatcatttatgatatgtattttcttcaaatttctattttcccccaaaatatattgaattcagaagaatggaaaatggtgatacgacaatggatctgatgtcttcactttttcagagagcatcgcaggcttcaccgacaattccttcaccagctactcctggaagcaatccatttggatcaaggcctccccacctgcggtaatagcataagactctaggcatttccttcagattggagtttgccagtgatagatgatggcttgatggcttcatgccgtcagaatgcattgtgcaacaatcttgatggcattcgaggaaaaaaaacaatcttgatgttactggcataccatatgttgctaagttagtctgtcattttgctagttgcaagttgcaacagattatactctcttagtttttttttaaccctttcatcagctcttttgcatcttgtcaaaagaataccctttaattagctcttctgcatctttgttagaggaagataatagagcaggtagcgaagaattgaaggaacatgcaaacgggatgtaccttctccattaatttgttgaaatgcgtgtggtttcagaactttcctgctggatgatgcaaggaatttttgttttgaacatggtgtagaaagcagctttatcatcaatgaagaaacccaactttgatgagaatttaccagtttc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0235200, RefSeq:Os01g0235200