Os01g0238900

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Revision as of 04:31, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0238900| Description = Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of Yarrowia lipolytica| Version = NM_001049076.2 GI:2975...")
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Gene Name

Os01g0238900

Description

Similar to Yarrowia lipolytica chromosome D of strain CLIB99 of Yarrowia lipolytica

Version

NM_001049076.2 GI:297596411 GeneID:4326362

Length

6841 bp

Definition

Oryza sativa Japonica Group Os01g0238900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:7677989..7684829

Sequence Coding Region

7682253..7682338,7682780..7682840,7682936..7683000,7683235..7683340,7684122..7684210
,7684333..7684495

Expression

GEO Profiles:Os01g0238900

Genome Context

<gbrowseImage1> name=NC_008394:7677989..7684829 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:7677989..7684829 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>gtaaatgaagatacaaattgctattcctttgatgctagaaagcttgatgaagccaaagttgttcacaagggccatgtttcagcagtgatggacattgattattcaccaacagggcgtgaatttgttacgggttcctacgatagaacagtgcggatcttccaatataatggtgatcatagcagggagatataccatactaagaggatgcaaagggtgttttgtgtgaaatacacctatgatggaacctatttggtttctggcagtgatgatacgaatcttcggctgtggaagtccaaagcttcagaacagttgggagttcttcttccaagagaacgcagaaaacaagaatacctagatgctgtcaaggagcggtataagcaccttcccgaagtcaagcggattgtgaggcataggcacttacctaagccaatctacaaggcggccaacttaaggcgaacgatgattgaagcagaaaaccgtaaagaagaaaggaggcgtgcgcacagtgcccccgggagcatgcctgtgcagcccttcaggaagagaagaataatcaaagaagtagagtaa</cdnaseq>

Protein Sequence

<aaseq>VNEDTNCYSFDARKLDEAKVVHKGHVSAVMDIDYSPTGREFVTG SYDRTVRIFQYNGDHSREIYHTKRMQRVFCVKYTYDGTYLVSGSDDTNLRLWKSKASE QLGVLLPRERRKQEYLDAVKERYKHLPEVKRIVRHRHLPKPIYKAANLRRTMIEAENR KEERRRAHSAPGSMPVQPFRKRRIIKEVE</aaseq>

Gene Sequence

<dnaseqindica>4265..4350#4792..4852#4948..5012#5247..5352#6134..6222#6345..6507#ctctttttcgcttccccctcccttccgactccccaacggcggcggcggcggcggcgtggtgcggcggcgagggttttaagtaggctgcgcggcggagaacgccggggacgcgagcggagtgatctagccttatcctccttcgtcgcctccggattggtttcgcggcggccggccgtgtctcctgactgcgtctgtggccgggatgagggtgaaggtgatatcgcgctccaccgacgagttcacgcgggagcgcagccaggacctgcaggtgcgtcgcgtcctcgcttccgcttccccttggctgcttcatgttgctgtttgtaggttttgattggtagcagtgatgacttcgttggtttgctccctcgcgagagcgcgatgtagtctccatgctttagttctatgatatggagctttgttgttgcaatcagctcgtaggttctgaagcaccgagtttgtttgcactcgaggacgaatgagtggtacaaatatatgcctagtcaatttggtgtagctgcgaagtttctaggggctaatttttatccccttttgctgggattgtgttgattttcttgaattcatcggttgacatgtggtatatatcgatgcataagagccactgcagagttccctttttctagtttggttctagctaaggttaacagaagagctttgtttcaaatgtctggacagagtattggttggagagatgtctcattgttgctttgcattctaggttaatatagtagatatctaccgtccattttttagtcaagcgatttacataattatgaagttaggttttgaatccttattttttcctgaaatatacactgagtttttgaatgctatggccaacactaggttcaggtcattgaaagtttgtctggtcacttgcttaggccaatatgattactctggttccagccactgacattttctatctcatttgttgctcccaacagaaagtattccgcaattatgatccagcacttcgttctcaggagaaagcggttgaatacaccagggctcttaatgctgcgaagttagagaaggtttgtgtgtcatttcttctctgtgttttttttctttcatagtacagattttgatgtgaactttgctgctctggtttcagatatttgctaggccatttattggagcaatggatggccatgttgatgctgtatcatgcatggcgaaaaaccccaattatttgaaagcaatattttctggctcaatggatgggggtaattaccatacttctgtactaggatgctgcttttgtctcctgatgttcttctgcattcttatttgcgcctttgataaagtagttcaatcaatgcagccataacatgcagaccttcagttttctgtcttttgagcctgggggtgatactcacatcagatgttttgtctgagtacatttgcatagctagttatagttactaactcttgtcttctgatgcacttagaaactatattatgaacctgaacatttgtttgcatttcctgagtatgatgcacttagaaactatattatgaacctgaacatttgtttgcatttcctgagtacttagttgattgataaagacaatatcggtattacaagtgaactgctattcgtgtgcattaattgtatctgatgatgcatgcaggcagtttatataatcgttatattatcaggaactgatgtttatgacataacagcagtgtgcatttgtgttgtcatttttacaagtataatttggttgtattatgtttcagtactgtacatgctgtggccattttatgtaactttagaaactggaactgtttttggttcacttcctgctatgtcgaagcagatgattttaattcatttattcagaacaaagtgacaatcatgcactgctttatcatagttacatttggatctgaaatggttaactgtagcttctgttttgctggcagatattcgtctgtgggacattgctgcaaggtactaatataacagtggtgatactctcgccagaggatcatccttttttattatgtacaaactcgtggcaccagtttgttcatctatgcatatccttgtccatattgctagctagagcagttcttaattatgtcacttacatatgccattttctttttgttgactaacaaaaacaggaagacagtctgccagttccctggacatcagggtgctgtgaggggtttggcgacatctactgatggtgatcttctagtatcatgtggtgttgactgcacgtaagttaaatttgtggttgtcttatgaaataatcttatttccaaactcagtcttagttagagtactgaaactctgaacctaaaactgccacaagcttaaccccaactaaacaactcttttttacacgtttacttatatggtttaggacccatttgtactaataaagtaagaagcttacggtgccttgcatataacatttacactggttacacatgtattgaatgaaactgtggctctaatattaattttacttcatttaaatcaaccttctcaatgtatgaagtaaaaaagatgtaattgcggaataccggctgtctgttcttactgtgtgcacttatccatccattgcagtgttcgactatggaaagtccctatgctcaagatggtagacactaacgatgctattggagatgcttctcaggtatacactgaatgcacacgtctagattcttttgtcttatcctgggtatatcttatttgattaacttgctactgtttatagccatcagcggtctacacctggaagcatgcgttttggtaagagtgtgctttgttatgttccagatttatttgaaactatagcctgtaggttcccaggttgatcaccaggtttcttttttcattatttttaggggtgttgaccaccagtgggatggcaatctttttgcaactgtaggtgctcaggttgatatatgggatcaaaacaggtagaatatttgaggattcacttgcagcagtttatcctttcgtttgagtcgtcgccagcactgacactttcatcatttgtataggtcagagccaataaatagctttgaatggggtaaagatacagttctgtccgtgagatttaatcctggagaacctgatgttctaattacatcagctaggtaagtttagttatttaggataaataactgatgactaattattttaaaattcatgttctccttttgactcatccaattatgtggacacttttttaaatttcttgctcaatgaccttgatgccagttttggtcaatcctatttcttggctgtgaatattatcatttattgttttgcctctcaaaaaacttcttaacacggtaatgtgggatgatatcaattttgcagtgatcggagtataacactttatgatctacgcatgtcatcccctgctagaaagctaatcatgaaggtttgttgaattctattttatttgtggatgcttggcagaccttaaaatttcaaaaccgatacatgtaacatatggacattgttgattctgtcatgcagaaaaagtttactctgttctcatagacaactacaaggtgtctgtgatagctagtagttgatattgtctccctccaatgttttctgctgtagttactgcatcatttattcacttccaagtcaaaaatataagtgaaaacaattatcttatgaagagaaaattccttttccacttgaaaatggacgggctctaaaaatagctactacctccatccaaaatataagaacttttatggttgggcatgggtatcaaggaagggcatgggtattaaggaagtaggtggaattaaatgggggaagatatatgattggttgagaagaggaagtatgtggagaaattaaatgggggaaggttgtgattggttgagaagagaatgtaggtggagaagttgctagattttgagacggagggagtactgttttccctttaattttttctgcgggtgctagcttgctatttgagtagctgcagaaccatcaagaagctaatgcaacttttgcttatgcagacaaggtgcaactcaatatgctggaaccctagggagcctatgaacttcactgccgtaagatttatttgtttcctgtatatggtgctgactgtcgaatgaattatttgaactgtatgctatagttctggagcttacctgtcaagctttccttacaaatagtgcaagcctaaactatgttttggtctttttatcatctagtaacatctatcctgatactttttcttgctaggtaaatgaagatacaaattgctattcctttgatgctagaaagcttgatgaagccaaagttgttcacaagggccatgtttcagcagtgtaagtagcatttggattttggaacctttttttttataccctgttttctttaaaatagatatatttgcaaatattgatcccttgtaaagaaaaaaagttagtagatatatctgcaaagactgattccttggtaaagaaaaaaaaggtcaatttacccatttattttgttgggtgttaactaagcatattataagttctaaactcataaaccaacgcaattttctacaaatatgagaaatgcatacatatatggcatggcatcaatatgctatcgaggatcttggcggaaggtttgtgtgtgaaatccagtcctccgcaaaagattctataagtatcaaacacatgcagagttaatatcccatgcaatttcccattatatcctgcatcttttgctactcttcttgattctgggaagtcattttacatgaacgttcttcacaggatggacattgattattcaccaacagggcgtgaatttgttacgggttcctacgatagaacagtacgtggactctcgaagatactatagtgaccttacattctagacatgtattggtgattttgcattaacaactttgttgtcaatgcttctggcaggtgcggatcttccaatataatggtgatcatagcagggagatataccatactaagaggatgcaaaggttcttttccattattttattggcattctagctttaactgatgctactttctaagatcaaacatcagagtgttctcaacctaatggacaacaagatcaaatataatatttcaccttcaaatgcttatatagctgacacttgttacctgtcagactgttatcttattgaacacggctttatggggtttccattgcatcagtcctgtctaaatcattttacctcttatctttgcagggtgttttgtgtgaaatacacctatgatggaacctatttggtttctggcagtgatgatacgaatcttcggctgtggaagtccaaagcttcagaacagttgggagttgtaagtttctaacaccatcttctgtttgccactttggcttacttgctcatatatcttgtgatttgcactcaccctcttgctacaaattggaagctaatttggacaagaaactctgtttctcactgttgaatgtagatgcttaacaaagtaaacatatcaacagccatttgtttttcacttgcttttaattgcttttctgtgctattatcatacactgccattagatcaagtgttgtgctgaattaaaaataatggataaccaccagaaaaatgttggcatatatacatggccagtgagagaaaaaggagacaagcaatctgcgatgaatgattaagtgctgctaggtgctagtggtgttcttaggtgccagagtggtcttgtgagatgctagcatacattagcatagactaggtgaacatagagctcgtgcaaagcaacatgagaatgcccgatccactgcaatttggaactcagtgaatgctcttctgtttcagtagaatttactgtgcaagtctgccttgaatgcttgaactttgatgattattaacatgagctgtgccttattcttagaaaaggctgtaccactcggtaccttgtttacatgttctttctgttagttcatgaacaattgttaccatacccattgttttgctgtcctttttttccaatgtgcacaggtcttattgtcatcgaacaaagcaactgatatattgcgcattattgtttcatgtttgtactttatttcataatattttctaatgcattattgtccttttgcagcttcttccaagagaacgcagaaaacaagaatacctagatgctgtcaaggagcggtataagcaccttcccgaagtcaagcggattgtgaggtaatataaccgcctcttgacgtggggaagttccacgtactttgtatagatcatctcgtttacaatccccatacttggaacaatcattttgttgatgttgcatggatggcgtttcgctgcaggcataggcacttacctaagccaatctacaaggcggccaacttaaggcgaacgatgattgaagcagaaaaccgtaaagaagaaaggaggcgtgcgcacagtgcccccgggagcatgcctgtgcagcccttcaggaagagaagaataatcaaagaagtagagtaaaatggaagaatatgtgtggcacaaaaccaaacgccgcgattttacaggtctagctcaagacggggacatgtctaatcatccaccaaaccattcatcggagagtgacgtctgttgcaaacagtgtttagaaagcagccccagcagcagcagaaatcgaagggtctatggttcatcagtttataaagggctgaaatttttgcttctgctcaatttgttgtatcgttttgcttgtaacgatttatgaaccttctagttatgtatctcgtattacttttctgatgagtaacctgtgtaatagctatgtcgaatggaacaatacatgtgtggctctgtc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0238900, RefSeq:Os01g0238900