Os01g0243900

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Revision as of 04:32, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0243900| Description = Protein of unknown function DUF1618 domain containing protein| Version = NM_001049103.2 GI:297596426 GeneID:4326751| ...")
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Gene Name

Os01g0243900

Description

Protein of unknown function DUF1618 domain containing protein

Version

NM_001049103.2 GI:297596426 GeneID:4326751

Length

3660 bp

Definition

Oryza sativa Japonica Group Os01g0243900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:7939081..7942740

Sequence Coding Region

7939081..7939109,7941474..7942740

Expression

GEO Profiles:Os01g0243900

Genome Context

<gbrowseImage1> name=NC_008394:7939081..7942740 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:7939081..7942740 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgtcaccaccgccggccacgctgtccaccgccgccgccgacgtgtcccatcccgcgcccgacgcgccggcgggctccaccgtcctcgccgcgccgccgtgcgtctccctcgaccccgccgcgccggcgcaccagcagcccgccgacacggtgtccgcgccgccgccgccgtcgtcgacgtgggtcatcctgggcagcatccctcgcgtgagcgccgccgcggacggcgagctccccgtgggcgccgacctctccgtcgcgctcgcggcgcccccgcgcgtcgcgatcctcaccatctccccggacgtgttcccggagccccccacgccccgcttcttcccgttcgtcctcgccgccgacacctcgggcctcctcctcctccaggcgaacctgggcatccccatgagccgcgaggtcgtcgaccgcccgcaccgccagggtctgaggtggcgcgacgccgcctcgcgctacttcgtcctcaacgccaccaccgcctcggcgttccacctcccggaccccgaggaacccatcctgcaccaggccctcctcggcctaatcgcctcacctcgcggcgatggccactacatggtcgccgagctccagcccctcatcggctgcgacaaggccaccctcctctgcttctcgtccgaggttggggaatgggtcgagaagagcgtccgttacccgctcccgccccgtccgttggctcccatctgcgtgttctcgcatcacgggaggctctggtgggtcgatctcacctggggcgtcatcaccagcgaccccttcgccgacgagccggtgctgggcttcatcccgttcccggcgggcaaggtgttgcagtgcagggaagcttggggagtggccgacaagtaccgctacgtgggcgtcagcgccggcaagctgcggttcgtggacacgtacaccgctcctcgccgcggcgttcctccgaaggtcagcgtgtggacgctggcagatccggactccacggagtggacgctcgagcacgaggcgaggttcgacgacatctgggccgacgagagctacaaggcgactggtctgtcgaagaagatccccgtgctcgcgctcatccacccggagaaccccaacgtcgtgtacttcttcctggaggagcacctgttcggtgtcgacgtgcgcgaccgcaaggttgtggagtgcgaggcctacgagctggttgcgccgccgagctgcttcatcgccaaccgcttcactcgcgcttggactctaccacgggcgctctcctcagttcagcctgaccgtagcagtaacacatag</cdnaseq>

Protein Sequence

<aaseq>MSSPPPATLSTAAADVSHPAPDAPAGSTVLAAPPCVSLDPAAPA HQQPADTVSAPPPPSSTWVILGSIPRVSAAADGELPVGADLSVALAAPPRVAILTISP DVFPEPPTPRFFPFVLAADTSGLLLLQANLGIPMSREVVDRPHRQGLRWRDAASRYFV LNATTASAFHLPDPEEPILHQALLGLIASPRGDGHYMVAELQPLIGCDKATLLCFSSE VGEWVEKSVRYPLPPRPLAPICVFSHHGRLWWVDLTWGVITSDPFADEPVLGFIPFPA GKVLQCREAWGVADKYRYVGVSAGKLRFVDTYTAPRRGVPPKVSVWTLADPDSTEWTL EHEARFDDIWADESYKATGLSKKIPVLALIHPENPNVVYFFLEEHLFGVDVRDRKVVE CEAYELVAPPSCFIANRFTRAWTLPRALSSVQPDRSSNT</aaseq>

Gene Sequence

<dnaseqindica>3632..3660#1..1267#atgtcgtcaccaccgccggccacgctgtccaccgccgccgccgacgtgtcccatcccgcgcccgacgcgccggcgggctccaccgtcctcgccgcgccgccgtgcgtctccctcgaccccgccgcgccggcgcaccagcagcccgccgacacggtgtccgcgccgccgccgccgtcgtcgacgtgggtcatcctgggcagcatccctcgcgtgagcgccgccgcggacggcgagctccccgtgggcgccgacctctccgtcgcgctcgcggcgcccccgcgcgtcgcgatcctcaccatctccccggacgtgttcccggagccccccacgccccgcttcttcccgttcgtcctcgccgccgacacctcgggcctcctcctcctccaggcgaacctgggcatccccatgagccgcgaggtcgtcgaccgcccgcaccgccagggtctgaggtggcgcgacgccgcctcgcgctacttcgtcctcaacgccaccaccgcctcggcgttccacctcccggaccccgaggaacccatcctgcaccaggccctcctcggcctaatcgcctcacctcgcggcgatggccactacatggtcgccgagctccagcccctcatcggctgcgacaaggccaccctcctctgcttctcgtccgaggttggggaatgggtcgagaagagcgtccgttacccgctcccgccccgtccgttggctcccatctgcgtgttctcgcatcacgggaggctctggtgggtcgatctcacctggggcgtcatcaccagcgaccccttcgccgacgagccggtgctgggcttcatcccgttcccggcgggcaaggtgttgcagtgcagggaagcttggggagtggccgacaagtaccgctacgtgggcgtcagcgccggcaagctgcggttcgtggacacgtacaccgctcctcgccgcggcgttcctccgaaggtcagcgtgtggacgctggcagatccggactccacggagtggacgctcgagcacgaggcgaggttcgacgacatctgggccgacgagagctacaaggcgactggtctgtcgaagaagatccccgtgctcgcgctcatccacccggagaaccccaacgtcgtgtacttcttcctggaggagcacctgttcggtgtcgacgtgcgcgaccgcaaggttgtggagtgcgaggcctacgagctggttgcgccgccgagctgcttcatcgccaaccgcttcactcgcgcttggactctaccacgggcgctctcctcaggtattgcatcgtgcatccctgcatcgtcattgtgtactgtactaatgttctgttgctctgttgcgatgtctctgctctgtatcgattgtctctgctttatgttcagcagttcaaagttggccctcttctacatagaagctgtgttgcatactaatactgtcctttcttgcatgatcatgtaatttcccttacatatgtaatatgttatgtttagaatagaagctagggcatatttgagagtctttggtccatcatgaagggtgcctctgtggttctatacaattgagcttcagtagttaactatttcagtagtaagtgtagtaaaaaagcttgtaacttccaactaaaaaatgctttcaatttgattgcatcacagattataagcttttcaacttgaacattcaaagtttgaacatgatatttccaattctctacatgattattagcttgaacattcacttagtgaaaaaaactgtactggaaacttccaaccttccttgtcgaattaaaaattttctactgaaagtttccgactttaccttatttaacagtttaacactatcaaaaagttccgctcattgcttaactcgtgagtattgaggcccatcacgttgttcaattaggatgtagtttgctaactcgttcttttcacatatccatgttcatgcatatgctttgtttcaagaatattgttcatttgttcttgttgagactatggcactatgctggttgattgcgcccggatttcgaagaaatctccatggttcccatgtggcatttcatggtagaatggtagactgttccagttcaaagaaacttttctggaagactagtcagtgtaaatttatttgttaatttgagacagtagtgcagcatatcatgctaacgtagcctatttgactttattcatatgcatgtcttcacatacatgttatgtgggcatatatgcatggctagttgttcagcatttgcctttgccttaacctacgtagttagaggcttcatgcaatagatcaggatgcttcatgttatagatttgtaaattttctttctccttgtccctaactaggacatggtcagagaggatctacaataatattttggaaagggctactgatcttatccacattgcgatggtttcaatatatatgtaaattgatattatgtcttgtacatgtgtataaactgatgctaggagactagtattcttcagtcgtatttaggacagtggagtagatatctgttgttggtgcttttggaaatttgagtgtgtgagactattagtggcaagagtatactagaacagcattataagtgagtaccaaatagcatcagaattttgacatccattgcattttcctatatacgaattcggtttagatttattttgtggcactagcaagcatatcatcagaatgatttagccatgaattttcagcatagatgttgtgtggttagacctatttcctattgctagcaaacacttaaaacaagttgagtagctaatgccatccaaggactacattttaccccgtaagattgatcccatctgcagagtttcagatctgcctattggcttgtgtgtttgacttctattgatttcttgtgtttgaacatgaagggatctccaattggtctaatgccatcaacctggctgaaaaggctaaatcccgaccatcccggcgagctgctaagaaaagtagcaggatgatgggatcgcctggagattatcacttggtgggaattaccaggcagacattcataggatgatcaggaacatggagcaagaggttatggctaactgtatcctaggtgagctatgtttgtgtatgcatcatcttggttctctaacagtctaactagcttcgaacatcatgtgtcaactgtagtaactttcttatgctaaaatctccttctggttgcaggttgttagtaatgaacttaactacttaagttatggagtgggcgtgggacactgggaaatgacaagtactctcatgctggcatgtttttggctatcgcggtgtacggtgtgcctcatgcaacagtaacttaaacgtgtttttttgggtcaatcaggtggccaaatgtcgatggaacattgttagttttatttagatgtaatgttgtatccctccttagattgaacgatgtgttcagccggcgtgatgctttcagagtttcagtgacctgcaatgccatgatacccttcagacttcagagatactcattccctgcatttggtgttcaatgcttattcctagtagtactactagtattttgctttcaattggtgttccctgtctctacataattacctgtgtgggacaattacgacgaaatgtgctcccatgcgttggctagttcagcctgaccgtagcagtaacacatag</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0243900, RefSeq:Os01g0243900