Os01g0248400

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Revision as of 04:32, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0248400| Description = Similar to Isocitrate dehydrogenase (Fragment)| Version = NM_001049118.1 GI:115435649 GeneID:4327213| Length = 5595 ...")
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Gene Name

Os01g0248400

Description

Similar to Isocitrate dehydrogenase (Fragment)

Version

NM_001049118.1 GI:115435649 GeneID:4327213

Length

5595 bp

Definition

Oryza sativa Japonica Group Os01g0248400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:8169289..8174883

Sequence Coding Region

8169485..8169533,8170375..8170418,8170613..8170722,8170940..8170977,8171089..8171166
,8171278..8171331,8171404..8171505,8172659..8172744,8172850..8172953
,8173036..8173104,8173190..8173305,8173400..8173434,8173617..8173759
,8174085..8174207,8174285..8174378

Expression

GEO Profiles:Os01g0248400

Genome Context

<gbrowseImage1> name=NC_008394:8169289..8174883 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:8169289..8174883 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgttcgagaagatcgtcgtggccaaccccgtcgtcgagatggacggtgatgagatgactcgagttatttggaaatggatcaaagataagcttatattccctttcttggacttggacataaaatactatgacttaggtctacctaatcgtgacgctactggggacaaagttacaatagagagtgcagaagcgaccctaaagtataatgtagccatcaaatgtgcaactataactccagatgaaggacgcgtgaaagagtttaatttaagtgcaatgtggaagagtccaaatgggacaataaggaacattttgaatggaactgttttccgagaaccaatcatctgcaagaatattcctcggcttgtacctgggtggataaagcccatatgcattggacgacatgcatttggtgatcaataccgagcaacagatacagttattaaaggtcctgggaagttgaagttagtatttgatggcagagaggaacaaatagagttggatgtgttcaactttactggtgctggtggagtagccttgtctatgtataatactgacgagtctatttgggcattcgctgaagcttccatgaacatggcttaccagaaaagatggccactttatcttagcaccaaaaacacgatcctcaaaaaatacgatggaaggtttaaagatatatttcaggagaactatgaaacaaaatggagagccaagtttgatgatgcaggaatatggtacgaacatcggctgattgatgatatggtggcctatgcccttaagagtgaaggtggctatgtttgggcttgcaagaactatgatggagatgtgcagagcgatctaattgctcaaggttttggatcgctaggtctaatgacatcagttctggtgtgccctgatggtagaaccattgaagctgaagctgctcatggtacagtcacacgccattacagagttcaccaaaaaggaggcgaaactagtacaaatagcattgcttcaatatttgcttggacaaccggactaggacatagggcaaagctcgatgacaataaaagactgttagattttgtacaaaaacttgaagctgcttgtgtgggaacagtggaatctggaaagatgacaaaggatctagctcttcttgtacatgggccaaatgttagccgagataagtatcttaacactgttgagttcatcgatgctgttgctgaggatttaagaacaagattgtcagtaacatccaagttatga</cdnaseq>

Protein Sequence

<aaseq>MAFEKIVVANPVVEMDGDEMTRVIWKWIKDKLIFPFLDLDIKYY DLGLPNRDATGDKVTIESAEATLKYNVAIKCATITPDEGRVKEFNLSAMWKSPNGTIR NILNGTVFREPIICKNIPRLVPGWIKPICIGRHAFGDQYRATDTVIKGPGKLKLVFDG REEQIELDVFNFTGAGGVALSMYNTDESIWAFAEASMNMAYQKRWPLYLSTKNTILKK YDGRFKDIFQENYETKWRAKFDDAGIWYEHRLIDDMVAYALKSEGGYVWACKNYDGDV QSDLIAQGFGSLGLMTSVLVCPDGRTIEAEAAHGTVTRHYRVHQKGGETSTNSIASIF AWTTGLGHRAKLDDNKRLLDFVQKLEAACVGTVESGKMTKDLALLVHGPNVSRDKYLN TVEFIDAVAEDLRTRLSVTSKL</aaseq>

Gene Sequence

<dnaseqindica>197..245#1087..1130#1325..1434#1652..1689#1801..1878#1990..2043#2116..2217#3371..3456#3562..3665#3748..3816#3902..4017#4112..4146#4329..4471#4797..4919#4997..5090#ggccgaacgcccgcgccgtgtctgcttatgatgcttcgttctctccgcgctccgtgtccgaccttcttcagacttcacacctcgcgcgccgccgcagctccgatcggaagaagctcgattcgtctccgactccgacgaccagaagctaccggcgacgcgagcggagaagcgcggaggggagggggcgcgcgccgccatggcgttcgagaagatcgtcgtggccaaccccgtcgtcgagatggacggtgagaacccccacctcccctctccttcccccccgcttccgatcggaactcgctcgtgattagcctcgctatctccgctgatatctacggggggagcctttgcctcttgtctggtgccgtgattgctttggttctgctataccattggtggtgggatggattaggctgctctacgtactggatctaaaatttgtaggtgtttggaggaagaaggggagtcgtcctgagtagaacgtgcggctgaaattagctaaatggtcctgttttgtgggaacagagttcaacacatttgatgtgctgaaagctgctctacttggcctttctgaaattctaggtgttacaaggaatagtggtagtcatccttaggcgtagaaagtgtgctgaaattagttaaatagccatcttcttgggaggacaaaatgttcaaccttagatgcgcggaatagtcggttttaaagggtaaatctaaaataactgttttagtgcattgtcattggtaaaaaagaaaagattattcatgtgaagaatatagtaaaaaaataaagaataaaattgaacccacagcatcgcttagttacaagttccaaggtgaactgtatcagtaaacacatatgccaatttcagaacttatcatctacaatgttcaagtgggctgaaaagtttttctgttgacagtctttctgcttcatttgaagttctgtgctgaaaagttccatcatcgaacttaagtaactttaaattgcatatttagaaagtataccatacttttggctagcccaatcatcctttgcttacctcagattgtagtggttatatatgactgtatgtgctttttacttaggtgatgagatgactcgagttatttggaaatggatcaaagataaggtcaggttcttgtaacaatatatgttttttattcttgattttgatgattgtttgtctagcattgtactctgcagctcctttttttttcacgttacatgttcattttttttactttgttatgcttttggtgctgcttcatcccttaatgcgggcatcgttaagaattatgttggatatctgttttgatcatgcagcttatattccctttcttggacttggacataaaatactatgacttaggtctacctaatcgtgacgctactggggacaaagttacaatagagagtgcagaagcgaccctaaagtaagcctgtaagcctcagttgtttgacgtcacagttctggtccattatttcttctattacttttttccatctaagttatgcttttgttatataattggtgctttaagctgaacctgtttaccctgtagtctcagttagaatacataatgtttactttttgtgatttctattataacgtttacattaggttgcttcagtattctatttttttttcaggtataatgtagccatcaaatgtgcaactataactccaggtgatgttcagcagaattgagctcattgacagatgagcatgatgtgttaacaagtagttttggacactcaatttaaatttgattttggccgcactattcatgagcctacagatgaaggacgcgtgaaagagtttaatttaagtgcaatgtggaagagtccaaatgggacaataaggaacattttgaatggtaaacctttaattggtcacatgtctatatggttctattttgaactttcatcaagtgcagctgttgctgttctcttatacttacttcagcagaactaattgactcctgcaggaactgttttccgagaaccaatcatctgcaagaatattcctcggcttgtacctggtacgaagtctgtatcaaaaataccgatagtagaattcattggtagttacactattttttttatgcttccagggtggataaagcccatatgcattggacgacatgcatttggtgatcaataccgagcaacagatacagttattaaaggtcctgggaagttgaagttagtatttggtatgtctcaataaagctaatgtcatgatagtggctgcagatctgaacttgtagcagccaggattaaattaatatttagctttgtctccctagtgtttatcctactaggaatgacaaggacttctaccttttcttttcatatgggcatcattggctttggctatagaaaagctgttctaaaaatttggggcttaattatttgtatagtcatcatatgccaccatattggcaaatagacttggtaatcattcttgtcagtttatttacttcagaacctattaaatggttaatagcctgatatatgttaatgctgagcagcgaacagaatatgttttttttttatggcagatcaatatattgacccggctttagaaaaaagcccaagaacaaaaacagagtcttatacaagacctggaaaataaaagaaacacaaagagatagctggggaacaaccagtttttcagagacaaaaggaacgtactcccaacctaaccacacccttacagaaaaaactgaaactcagactaaagtagctattctatagctatgcaggtagcacatgaggcctgacttgattcagctttatcctgattgcttcacaccatcctcccagcagctcctggtcttcctcctttagcaaaatgcgccacttctgtatgaaagacagcgatttataaaccacataaaggggagacttgacaagaatattttcaaacacccagtcgtttctaatgatccaaatagcccaacaaacccccccaattaaagagatccaaggtttaaactttttcctatctttgagcagactcatacactcccatagattattaggtaaagaaaccagattcaaagcatccctaataacacaccaaccaaaaacagctaagggacatttaaacaagatatgattagtagtttcagttttgccacagagcttgcaatattgaccaatttaaacagaatatgtttctgtcagtaagaagagcttttatatatgtaaacatacttcactgatttgtggtgtcatcacatcaatatccaagcatcagggaataagcttagtcagtttactaaaattgctaactataaattaacctttgtgtcaatgttatccactcatccttacactatcttctcctcaaaactggtatagatggcagagaggaacaaatagagttggatgtgttcaactttactggtgctggtggagtagccttgtctatgtataatactgacgaggtttgtttatgataccctttatcagggtagcttaattttgatactctgtatttttaaacagggttttaaacttgacaacctctattttatgtttgttgcaaatagtctatttgggcattcgctgaagcttccatgaacatggcttaccagaaaagatggccactttatcttagcaccaaaaacacgatcctcaaaaaatacgatggaaggtcaatagtcaatcgtcgtatgctatttgtttcttttaatagacatgtatgtccatattgaaatattacttttatatatcaggtttaaagatatatttcaggagaactatgaaacaaaatggagagccaagtttgatgatgcaggaatatggtacagctatcttctatctaccttactgtaggaacatggagccttattttcctcctttatgtcctaatcatttctgctgtggcaggtacgaacatcggctgattgatgatatggtggcctatgcccttaagagtgaaggtggctatgtttgggcttgcaagaactatgatggagatgtgcagagcgatctaattgctcaaggtttttgcttattatatgtgtatactctcttctgaccttttatttggagaaaaatgaagtctttgctaagagcaggatgattttacttgtacaggttttggatcgctaggtctaatgacatcagttctggtgagtgttctccctgctgaactgttatctgtttatctgaaagttcaaatgtagaacaattgttaatgctatctagaacaattgtagattccaatatgctgatggtgtaacctctatttaaaaaatatgttctgattagattaatcttctgaatttaacaaataagttctgcattgccttaggtgtgccctgatggtagaaccattgaagctgaagctgctcatggtacagtcacacgccattacagagttcaccaaaaaggaggcgaaactagtacaaatagcattgcttcaatatttgcttggacaaccggactaggacataggtatgagcttgaattaaaccatagtaactaagatcgatgagcttgcttttcacttaattagtttggctctaaatgatgaaatctatatgctcagttttcccatcatggttaatgctattctattgtagtacatcatcttttagtccttttgttagtgctcagagcagaaaattttgtcatctaaaagttagggagagtttctgttcttaaagaaatttattctgctccttatatttcctgctttttgttgtaaatattaagtatgctacataaataattaagagttgtaagtcttgtgacttgactgttgaacacaccacaacagggcaaagctcgatgacaataaaagactgttagattttgtacaaaaacttgaagctgcttgtgtgggaacagtggaatctggaaagatgacaaaggatctagctcttcttgtacatgggccaaagtaattcctacttctcttatttattctgtagtaataatagacaagaccttttaattgattctgttggaattgtacagtgttagccgagataagtatcttaacactgttgagttcatcgatgctgttgctgaggatttaagaacaagattgtcagtaacatccaagttatgaaggtatctcttacaagctgttcgacctacctcttaccttatctgacacaagtatctgaagactgttatgtcacataaactttcttttacacaggaatgaatagggcaacggcaggggacatgttaggatcccatgatacaaagtttatacatttttactttgaataagagcgattgaagcattggtatgcgcagctatcaaccacggtgctctgataaaatctggtaaagattgtatgcatactccatacaacaatggaggtggaggaggatattttgctcgaaataagaagtttgaacttttattcgtcagacttctacttataactactttgatgattaaatcatggccgtgtagcttagttcttctatgccaaaagagcaagtagaactatcctaaaggtacccaccacaagtggtgtttgtgctttgtaccatacaaacaagactgtttatttactacagtatatagcttggaataaaaaagcaggtgcagatctgttggt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0248400, RefSeq:Os01g0248400