Os01g0275200

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Revision as of 04:34, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0275200| Description = Argonaute and Dicer protein, PAZ domain containing protein| Version = NM_001049256.2 GI:297596534 GeneID:4324436| Le...")
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Gene Name

Os01g0275200

Description

Argonaute and Dicer protein, PAZ domain containing protein

Version

NM_001049256.2 GI:297596534 GeneID:4324436

Length

6394 bp

Definition

Oryza sativa Japonica Group Os01g0275200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:9611635..9618028

Sequence Coding Region

9611635..9611742,9612637..9612776,9612888..9612919,9613060..9613154,9614036..9614109
,9614226..9614361,9614480..9614543,9614933..9615060,9616117..9616254
,9616353..9616465,9616553..9616712,9616786..9616899,9616996..9617058
,9617158..9617265,9617353..9617469,9617566..9617731,9617811..9617908
,9618023..9618028

Expression

GEO Profiles:Os01g0275200

Genome Context

<gbrowseImage1> name=NC_008394:9611635..9618028 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:9611635..9618028 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagagccaagtgtgcactgaagaacctgaggataaaaacgactcacaccggctctgaatttaggatcatcggtttgtctgaagacacttgctattcgcagacgttccaaataaagagaaaaaatggcaacggtggctcggatacagtggaagaagtgacagtctttgaatactacaggaagaattggaaaatagatttgaagggatctgctcactttccctgtctaaatgttgggaagccaaagcggccaacatatatcccattggagctttgccatttggtgccattgcaaaggtacaaaaaggctttgtcgacgttacagcggtccacgttggttgagagatcaaggcagaatcctcaagagaggatgtttgtcttgtctggtgtgttgagggacagtgattataactctgtgccaatgctgagggagtgtggcatttctatagctcaagaatttacccaggttgctgctagagtccttccggcaccaaagctgaaatctggagatggcgaagatatttttgcgcgcaatgggaggtggaacttcaataaaaataggctcattcagcccaagagagtgcagagatgggtagttgtcaatttttctgcgcagtgcaatgcccatcatcttgctcagcgtctcatccattgtgggaacttgaagggacttccagtagatcctgaagatcatgtgtttcaagagagatctcacatgggacgcgagcgtgcggaaacaagggtgaatgacatgtttcagcagttgttgtctggcgacaagccctcttttgtgttgtgtgttctccctgagaggaagaactgtgacatctatggaccatggaagcgtatgtgtctcgtcaaatacggtattgtaacacaatgcttggctcctaccaagatcaacgatcagtacctgactaatgtgcttctaaagataaatgcaaagcttggagggttgaattcgctgctgcaaattgaaagaaaccaagccattcctctcttgtcgaagactccaaccattatcttaggcatggatgtttcccatggctcaccgggacgggatgatgtaccgtctgtcgctgcggttgttagttccctggagtggcctctcatatcaaaatataaagcctccgtatgcacccagtctcccaggctagaaatgatcgattccttgtttaagctagtggggaatgaggatcatgttatcattagagatggggttagtgaaggccagtttaatcaggtgctgaacattgagctagcccagataatcaaggcatgcgagtttcttgccaatgagaaaaatgacagtgaatggtctccaaagttcacggtgatagttgcgcagaagaaccatcacaccaaattttttcagacagatcgatcgaacaaagttgtcaatgttcctcctggtactgttgttgacaaaggaatctgtcatcccaggaactgtgatttctacatgtgtgctcatgctgggatgattgggactacaaggccgacgcattaccatgtgctgcatgatgagaacaatttcacccctgatgacttgcaggagcttgtgcacaacctctcatacgtgtaccagaggagcacgacggccatctcaggtgtcgctccgatctgctacgcgcacctggcggcggcgcaggtgtcgcagttcgtgagactcgacgacgcggcgtcggagggcagcggtgacggcggcgcgccgccgcggccggtgccggagctcccgcgcctgcacccggacggtggctgccttgagatggtgtatgagttggctcacctctacgacatcatcatctctaagatacacattttatctatatttttattagcaagtttttcaaactactaa</cdnaseq>

Protein Sequence

<aaseq>MRAKCALKNLRIKTTHTGSEFRIIGLSEDTCYSQTFQIKRKNGN GGSDTVEEVTVFEYYRKNWKIDLKGSAHFPCLNVGKPKRPTYIPLELCHLVPLQRYKK ALSTLQRSTLVERSRQNPQERMFVLSGVLRDSDYNSVPMLRECGISIAQEFTQVAARV LPAPKLKSGDGEDIFARNGRWNFNKNRLIQPKRVQRWVVVNFSAQCNAHHLAQRLIHC GNLKGLPVDPEDHVFQERSHMGRERAETRVNDMFQQLLSGDKPSFVLCVLPERKNCDI YGPWKRMCLVKYGIVTQCLAPTKINDQYLTNVLLKINAKLGGLNSLLQIERNQAIPLL SKTPTIILGMDVSHGSPGRDDVPSVAAVVSSLEWPLISKYKASVCTQSPRLEMIDSLF KLVGNEDHVIIRDGVSEGQFNQVLNIELAQIIKACEFLANEKNDSEWSPKFTVIVAQK NHHTKFFQTDRSNKVVNVPPGTVVDKGICHPRNCDFYMCAHAGMIGTTRPTHYHVLHD ENNFTPDDLQELVHNLSYVYQRSTTAISGVAPICYAHLAAAQVSQFVRLDDAASEGSG DGGAPPRPVPELPRLHPDGGCLEMVYELAHLYDIIISKIHILSIFLLASFSNY</aaseq>

Gene Sequence

<dnaseqindica>6287..6394#5253..5392#5110..5141#4875..4969#3920..3993#3668..3803#3486..3549#2969..3096#1775..1912#1564..1676#1317..1476#1130..1243#971..1033#764..871#560..676#298..463#121..218#1..6#atgagagtaaccattgaaattctaacaaaatgtactagtcctgaaagagggataaccagtgaacgttcattagatcacatagtttccatgttctttgcttgttttttttttctttttaaggccaagtgtgcactgaagaacctgaggataaaaacgactcacaccggctctgaatttaggatcatcggtttgtctgaagacacttgctattcgcagacgtgaggccatattcctgaattccatttctgagctgcaaacgcgcctcgaccttattctagtttttctttcctgatccaggttccaaataaagagaaaaaatggcaacggtggctcggatacagtggaagaagtgacagtctttgaatactacaggaagaattggaaaatagatttgaagggatctgctcactttccctgtctaaatgttgggaagccaaagcggccaacatatatcccattggaggtatgtcttactttctctgaaacatttttttggtacaaatctctatagctgtttttattgttcatgtcattaactgtgtggaaaatgttctaccagctttgccatttggtgccattgcaaaggtacaaaaaggctttgtcgacgttacagcggtccacgttggttgagagatcaaggcagaatcctcaagagaggatgtttgtcttgtctggtgtaagttgcaatgcttaataccctaaattcagctcagctgatggtatcccgtatccatgattgtcaaaaattcaccatctgtggcaggtgttgagggacagtgattataactctgtgccaatgctgagggagtgtggcatttctatagctcaagaatttacccaggttgctgctagagtccttccggcaccaaaggttggtcataactatccactgctgcctttcagaaacttttcttgatgaactgatgatgtaggaagcattgttgatctaatcaaatcttacattgttaagctgaaatctggagatggcgaagatatttttgcgcgcaatgggaggtggaacttcaataaaaatgtgagtacgtcgcttagttgcactccatttgtataccgtacctactattcatcatcatgttcattgtcgataatgttgccaattctcttcctctagaggctcattcagcccaagagagtgcagagatgggtagttgtcaatttttctgcgcagtgcaatgcccatcatcttgctcagcgtctcatccattgtgggaacttgaagggacttgtaagttcatcctccacccaatcttgtgccttttctgcagattccggtatcgctcaactagtttggcttgcagccagtagatcctgaagatcatgtgtttcaagagagatctcacatgggacgcgagcgtgcggaaacaagggtgaatgacatgtttcagcagttgttgtctggcgacaagccctcttttgtgttgtgtgttctccctgagaggaagaactgtgacatctatggtttgctccacttaactttttaaccctgtaaatgagcttaccatgcctctatcatcaaggatcatttattttcttgtttattttcaggaccatggaagcgtatgtgtctcgtcaaatacggtattgtaacacaatgcttggctcctaccaagatcaacgatcagtacctgactaatgtgcttctaaagataaatgcaaaggtaatctgcactgcagacgtgatcagaaaacaaaattacacagtttcttgttgccacctgttgtgaattttatgttgtttttctgtgttttcaatcagcttggagggttgaattcgctgctgcaaattgaaagaaaccaagccattcctctcttgtcgaagactccaaccattatcttaggcatggatgtttcccatggctcaccgggacgggatgatgtaccgtctgtcgctgcggtaagtttcccccgtatgctatgatcttgcttacttatggagatgttttacgtacctggaggtggaacaacgtgcaccgttgatcaagagaggggtaaggtacagaacaaatttattgtaacatgatggcagtggtgtaattaacttgtaaaatatggccattatactttaattgaatactaacatccatcgatcggtatgccatcagaaaaaagagtaaatctaatatccatcgatcggtatgccatcaaaaaaaaaagaaaatcacggatatccaatcgatctataccagatcgcattgtcttcttttccagatcgcatcgtcttctttccctgctttgttcttgttctagggtttgaacgtttcaccggaaagagacagagggaaaagtgtaggtatggttgagggttgaataggagactagattgtctggtcgacgatataaatctcttgctggaaataaaatgtaattttcaacataattaaggtaggagtttttacgtatttgttggaataaaatgtaaatgtagaaaaaaaatcacataattgggtcaataatgtgttgtaagaacacaatgtaaatctagactcaaatccaacgtaaatctacaagaaaccacgcaaatcaaaaaattaaaccttagtgacgcagtaaacgacttaactccaatacaacgtaaatctacaataaaccacgcaaaacaggaaattaaacagtgcaaagaggttttacggtgttaatacgtaccgttatacctatgcggtaccttttataatttgggagacaattctacccttttctctctactagcaaaattatgtttttacccttagtacctaagtacctatatcaatacttaaatacttttaacatggtacctgtgattgaggagcgttggatctttaccctttttggaatgcaaacaccgtaaaacctctcttacttatgtttctctacttctgaaagtatcagcatatgaagctcagtgacatctggatggttcttgcagctgacaattagctgatgtgctacagtgttttctgttcttatctaggttgttagttccctggagtggcctctcatatcaaaatataaagcctccgtatgcacccagtctcccaggctagaaatgatcgattccttgtttaagctagtggggaatgaggatcatgttatcattaggtgagatgcttctatgacattcaattcggttcatttcgaatagtttgaggtatatcttgcagactgccactattgttccgtaatagttttgcttgctaagaatcggaattgtttaccacagggagtcactaatggacttctacaacagttctcgcggacacaagccagaaaaaaaaaatcattttcaggttggttgttcttctgaaatatatgtttgcaacttctaatttatactgaaatttttctggacctgtctcttacgttaaacaagagtaaatttcacaaaaccactctaattcagtcttggtggaattgtctgacagtaagttttactactttgttatctcggtactattgttttctaactagttttgccatcttaattttagagatggggttagtgaaggccagtttaatcaggtgctgaacattgagctagcccagataatcaaggtaaacatgcccgatctgcacagtctgcatttactgctcagcccctgtgcttttgatacaatgaacatctatcttctgcatattttagttgatactcatgtatttcgaatcgatttaggcatgcgagtttcttgccaatgagaaaaatgacagtgaatggtctccaaagttcacggtgatagttgcgcagaagaaccatcacaccaaattttttcagacagatcgatcgaacaaagttgtcaatgttcctcctggtaacaattacatccttcatctcacttttttttcaggatcctctcttaatcctattctggtcaggtaccatcaacatttttctcctcactcttgaagatgtgccgttgttttgtaggtactgttgttgacaaaggaatctgtcatcccaggaactgtgatttctacatgtgtgctcatgctgggatgattgtaagtgccctatcttaaatatgaattccagttggcttagtaccattggaaagattacataatcgagaaaattaccacatacgcgccactggacacgtgtaactctcagatccacatgtcattcggacaaatgtgatattcttttgagtaaatttcacaaaacttgcatatttgatcaaactatcacaaaactaaagatttaaggcgttataccacaaatctacagatttagacctaatttatcacaaactatagacttaagactgagcatcgtaaaaactacagatttatttctaaagttatcacataactatatgttgtaaaaactatagatttaatcttaaagttatcacataactatatattgtaaaaaactattttagagtttaaatccttagcactgatgttatgctgaagctatcaatgtggtagttttatgattaaattgtgctaaacatgtagtgtttttttttcatataattttgatacaaaatctatagttttgtgatacttcatcttaaatttgtagttccgtggtattttttgctaaattagttttgtgatataccggcttaaatttgtagttttacgataatttgatcaaagtatatagtttgcaaaattcactctatttttttcccaactacatctcaaacaaatgtacatgtactactctctgtcccaaaatttagtaatttttagagatgacataggtactaaaaagagggtaaggagagagagggagggaggtagagagtatgagtagtttagtgataaaagttatacatgtcttagtttgctatatttgggataaaaatttgaacacacttgctacacaattgcaatttgtgctctaatcagattgtctttatatttgacaggggactacaaggccgacgcattaccatgtgctgcatgatgagaacaatttcacccctgatgacttgcaggagcttgtgcacaacctctcatacgtgtaagccacactgaaactctgaaaccgcacagaaaaagaagaaaaaaaattcagtaatctctggtgatcattcgactgcatttcgttcgtctgttctgaaattctaatcaactttgtgatgcttgtgaactctgcctcaggtaccagaggagcacgacggccatctcaggtggtaaatttgatctaaacacagacaaattagaccagtcgatttttctgtcactctgaaaaatcaaaagttcagtagtttcacctgacatgtcattccttttgttcttttcagtcgctccgatctgctacgcgcacctggcggcggcgcaggtgtcgcagttcgtgagactcgacgacgcggcgtcggagggcagcggtgacggcggcgcgccgccgcggccggtgccggagctcccgcgcctgcacccggacgtcaggcagtccatgttcttctgctgagtctgtgagcaatgcaagaagtagctgttgctgtggcgcagctttgctgttcgttgggattgatctctgaaaactgaaactggttgttgctactcaataatcacaagctgtaatgcgacattgttaggctttgtgcgtctttgttcgcagcagacgctagattatcagtctatgatctatctagggaatgtcaaaatggacataagtgccttcttctatctgtttttcatttggatcttattagactgcactgttagtctgcaatgggcttgaatagtttgatctgtgcatttatttgggctgttgttttgcagctttgaatggataacagcatgctaaacgaactgattcctactgattcttgcactgtttaaaatgctttgctgcgtgagcaaacatgctaattgtcgtgttgggcttggtccggcccaggttcagatagctggcccagttgtaccatgtgcactaacgcatggtcatgtgtgccttacgaggtttttcatcataatttatttatttatttcatttttgacttttaaatcactaatggcacaagtaaaagctttacccataaataactttttgttgatttgtttatttttttcacggcttatcagcccattaagcaaacgatggaagaagtggtaaatccaaatgcgctttcttgagtttctcgcccatatttttcctccagtagctcaacgagccagacatagcaacatgtcacctcgcccacgcttatgctatcggctccttctcggccctcctctctagctttcgactctccaattgtactgttcaggtgtcgctgagctctcgttggctggctggctagtgcgcacagcgatcaggttcatgtcgcaatagggtggctgccttgagatggtgtatgagttggctcacctctacgacatcatcatctctaagatacacattttatctatatttttattagcaagtttttcaaactactaa</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0275200, RefSeq:Os01g0275200