Os01g0276100

From RiceWiki
Revision as of 04:34, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0276100| Description = Similar to 3-isopropylmalate dehydrogenase, chloroplast precursor (EC 1.1.1.85) (Beta-IPM dehydrogenase) (IMDH) (3-IPM...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os01g0276100

Description

Similar to 3-isopropylmalate dehydrogenase, chloroplast precursor (EC 1.1.1.85) (Beta-IPM dehydrogenase) (IMDH) (3-IPM-DH)

Version

NM_001049260.1 GI:115435933 GeneID:4324442

Length

4703 bp

Definition

Oryza sativa Japonica Group Os01g0276100, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:9664365..9669067

Sequence Coding Region

9664808..9664963,9667010..9667330,9667409..9667570,9667669..9667743,9667937..9668046
,9668125..9668197,9668583..9668774

Expression

GEO Profiles:Os01g0276100

Genome Context

<gbrowseImage1> name=NC_008394:9664365..9669067 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:9664365..9669067 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgctacggaggctgctccaggggagcgtcctgccgcggatggcgggcagagccgccgcggcgccgttctcgacggcgtccggggagaccgtccgcgccacgctcttcccaggcgacggcatcgggccggagatcgccgagtcggtcaagcaggtattcaatgttgcaggggtaccaatagaatgggaagaacactatgttggtacagaagttgatcccagaacagagagttttctgacttgggaaagcttggagtcggtgcggagaaacaaagttggcttgaaaggtcctatggctacgcctattggaaaaggccaccgttcattgaatcttacactaaggaaagagcttggtctttatgcaaatgttagaccttgcaacagcctcccaggatacaagactcgatatgatgatgtgaaccttgtgactattcgtgaaaataccgagggagaatatagtggccttgagcatcaggttgtgaggggtgttgtggaaagcttaaaaattatcactcgccaagcaagtttaagagtggcagagtatgctttccactatgccaagaccaatggccgggagagggtctctgcgatacacaaggccaatatcatgaggaagaccgatggtcttttcctcaagtgctgtcgtgaagtggctgagaagtaccctgaaattgtatacgaggaggtcatcattgacaattgttgtatgacgcttgtgaagaatcctggtctttttgatgtactggtgatgccaaatctttatggtgatattattagtgatctttgtgctggtctgattggaggcttgggcttgacacccagctgcaacattggtgaaggtggcatttgtctggcagaagctgttcacggttctgctcctgatattgctggcaagaaccttgcaaacccgaccgctcttatgctgagtgctgttatgatgttgcgccacttgcaattcaataaccaagcagaccggatccacaacgccatcctccagaccatctccgaggggaaattcaggactgctgatctcggcggaaaggcgtcgacttcagacttcacgaaggcagtctgtgatcatatctga</cdnaseq>

Protein Sequence

<aaseq>MALRRLLQGSVLPRMAGRAAAAPFSTASGETVRATLFPGDGIGP EIAESVKQVFNVAGVPIEWEEHYVGTEVDPRTESFLTWESLESVRRNKVGLKGPMATP IGKGHRSLNLTLRKELGLYANVRPCNSLPGYKTRYDDVNLVTIRENTEGEYSGLEHQV VRGVVESLKIITRQASLRVAEYAFHYAKTNGRERVSAIHKANIMRKTDGLFLKCCREV AEKYPEIVYEEVIIDNCCMTLVKNPGLFDVLVMPNLYGDIISDLCAGLIGGLGLTPSC NIGEGGICLAEAVHGSAPDIAGKNLANPTALMLSAVMMLRHLQFNNQADRIHNAILQT ISEGKFRTADLGGKASTSDFTKAVCDHI</aaseq>

Gene Sequence

<dnaseqindica>444..599#2646..2966#3045..3206#3305..3379#3573..3682#3761..3833#4219..4410#ccccttccaccatcctctcctcctcctcccctttcccatccatctctctctctctcctcctcctcgccgccgaccgccgccgccgccgcgagtcgccttcgccgtccggtacattcccctcttccccatctcacctcccctgcccctcgctacccggatcgcctccgattcgatcggaggtcgtggggggcgccgttcgcccgatcgatcgaattttgcgcggtcgcgccgcgcgctccatcgggggggattgggtgggtgccccccccccccccccccgcgcgttcgatcgagcgagcgtgatttggttgatgatttttgtgttggggttggggttggactagtccgcgccccgttcgttccgcgggtgttgggagtctagggttgacgtgtgtttgtggtggtgcgcagggtagcagcaggaagagggaggaagggggggcatggcgctacggaggctgctccaggggagcgtcctgccgcggatggcgggcagagccgccgcggcgccgttctcgacggcgtccggggagaccgtccgcgccacgctcttcccaggcgacggcatcgggccggagatcgccgagtcggtcaagcaggtacggaatttcggttttgtatatcctgatttgttattatatatacccctctgtgaccacgactcccatcagctcgggctgtattcgtccgacgcggaccttccttgatccgatgagaaaaaaaaaagcaagtttgttagtttgttttcaagctgtgtgcaacagctttaagatttattttggccatgacgtgcagggaagatgattaaattcttcgtctcttttagttttttgtctgctgcccacagatttatttacattctgtctagaacgtgcaaagatggttcttattacgccatctgataattgatgtgaacttatgcccccgccactactgcatgtaaataataatgacctctaccgcctgtaaatggcaatgaaaataacgaggacattgcttatttctgttttgtttcttttccatgaaaacttagatatgacaatgagcataaatagtttgcacattctaccttagtttttctgttcactgggaatgttgcttattgaaggattacatttacgtcgataaagaagcagaaggcccttgtaaattctagcctcttaccaagagacggcattttggacccttcaaattaaatcacgttcctgaattagggaggataaatcatgttgcacaaaattaaaataccttatactctgtttggatctcatgactttttagtccattgcgtgcatgcactttaaggtaatttcagtttaaatttgacatggcatactctgcagacaagtctatgtatgatatatgctattattcttgaaagtagagcacttgattatttataattctagttggagagccaactgaattgagctgatttcttctaaaatttgctattggtgtcagttgggcaactaggttttcttgttttgatgtttcaatccccttgaaattttatgcggccggtaatgatatctacggttttgttcacaatgtatcctcatcatttatgtaggtcacatgcaatgtagtagagagtttatgggttacaatatgcaccttggtcaagtgttttatttttgataaattatattttattattcaatcattgattgaatgtgtgccaggctactgtgtttataagctttctaagataagtagtagatagagtgtgtgcatcaaaaacttcacagtggaaaataaataaatttaaaccccatagtatttctgtgataatcgagaaaaagtagaatatccaccggccgttgatctctcttttgctttatttgaatatgtgtgcctagttagtttagcttgtaaataaaaaggaaggggcctttgggtttaacttagcacagctccactattgagtttcatttaggcatatcagcccattccttttgatttctttctcttttcatgtctgaaatcatgtttggttaattggctgcaagcacatgcctttgatatctctgtttgatttacctccaatcaaactgatttaataactgctgtcaattgtgtaccatcagattactctgtcatactctaataatcaaactacaatcaaatctccctagggaacctgaatgttggagctagtgttgatgtgatgttgctggcttgcttaagatagtgctatatccgtcccaaaacgaatgcaagtctagcaatgcacctagacaagtgtttgtccatgtgcatagctagaattgcattctttttggaacaaggtagtacattttatgcttatgctgagctaattatcttcctagtttttttggtggacataaatgcacattagagttcatgtttaaacggggtgtttaattattgcatagagcatgggatccaaaacttactgagcaatgctactatgctaggcaactcttctatatgtaaatatcctcattcttgcaaaataggatacaaccttacataactcttccggcgattgatgcaatgaagtcacaccttcttgttccaaaaatggtgccaagtgccttctgatcatgctttctgactatgtagctcgttcttatgtatttattatatcttagtttgaacttttccttttgctgtttcaggtattcaatgttgcaggggtaccaatagaatgggaagaacactatgttggtacagaagttgatcccagaacagagagttttctgacttgggaaagcttggagtcggtgcggagaaacaaagttggcttgaaaggtcctatggctacgcctattggaaaaggccaccgttcattgaatcttacactaaggaaagagcttggtctttatgcaaatgttagaccttgcaacagcctcccaggatacaagactcgatatgatgatgtgaaccttgtgactattcgtgaaaataccgagggagaatatagtggccttgagcatcaggtaagcattcttaaaagcaatatcattttcattggtcttgttagcattattcatcactgtgtgctatttattctccaggttgtgaggggtgttgtggaaagcttaaaaattatcactcgccaagcaagtttaagagtggcagagtatgctttccactatgccaagaccaatggccgggagagggtctctgcgatacacaaggccaatatcatgaggaagaccgatggtcttttcctcaaggtctgtttgctacctgttccttctaacttgatggaatgtattccttaattcatatcactgggagctgatgttctgtttgttctttgttttactttcagtgctgtcgtgaagtggctgagaagtaccctgaaattgtatacgaggaggtcatcattgacaattgttgtatgacggtatgttgttctgctgataccaaaacctgtgctttgtttggtgttaatgttgaagcattcttcacactggtctgatgatctctgatcgacctgagaaatgcaaattatcctatttgtattctagccacttctattgctgtcctggacagttaattaatgacaccattgatttgtgaacattgtccccttgcagcttgtgaagaatcctggtctttttgatgtactggtgatgccaaatctttatggtgatattattagtgatctttgtgctggtctgattggaggcttgggcttgacacccaggtaaatttgttattgtttgttctatcaatttgacatccaggtaatacaacgccaactaactattttgcactctcccagctgcaacattggtgaaggtggcatttgtctggcagaagctgttcacggttctgctcctgatattgctggcaaggtgagttagacatgaacaattcctgcttcatagcttgatttacgatgtttcaacctatttaaatttcctagtacttgtagagtcagttgtatcacttgataattcatgacatttctcgttatgtacgggcctgtttggtacagctccaactcctaaatttagctccaggagttgggtctggagtggagttgtggagctgcctaaacccagctccacaactctagtttattttgtgagagagctccacccatggctgagctccagctccaggagaggtggagctggagctgtgccaaacaggccctacataggaaaattatcaatgtgaattactgatcagccaattgttcctacaacactttaactgaatgttttttttccccagaaccttgcaaacccgaccgctcttatgctgagtgctgttatgatgttgcgccacttgcaattcaataaccaagcagaccggatccacaacgccatcctccagaccatctccgaggggaaattcaggactgctgatctcggcggaaaggcgtcgacttcagacttcacgaaggcagtctgtgatcatatctgatcgtccgatgtgattccgtcctcttgattgttttccttccccctaatttttgttgcatacgcggagagaagctttagctttaagaggttaactggcggcacctcaatttctttgggcttcagcatgggttaagaccacctaataatcctgtcgcattcttgctcttggaaaagtttcttccaacattgcagtccagtcagagaatggcctgtaataattagtgacaaaattatagcagtagatagaatctgttcattcaagttcttcaaattactgggccaagcttcaatgtc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0276100, RefSeq:Os01g0276100