Os01g0279200

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Revision as of 04:35, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0279200| Description = Similar to COP9 signalosome complex subunit 2 (Signalosome subunit 2) (FUSCA protein 12) (FUSCA12)| Version = NM_0010...")
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Gene Name

Os01g0279200

Description

Similar to COP9 signalosome complex subunit 2 (Signalosome subunit 2) (FUSCA protein 12) (FUSCA12)

Version

NM_001049281.1 GI:115435975 GeneID:4326902

Length

7050 bp

Definition

Oryza sativa Japonica Group Os01g0279200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:9877369..9884418

Sequence Coding Region

9877481..9877490,9877579..9877671,9880050..9880128,9881451..9881691,9881774..9881848
,9881940..9882074,9882614..9882801,9882895..9882963,9883040..9883130
,9883242..9883376,9883803..9883915,9884000..9884090

Expression

GEO Profiles:Os01g0279200

Genome Context

<gbrowseImage1> name=NC_008394:9877369..9884418 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:9877369..9884418 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggctccgatgcggacatggaggattacgggttcgagtactccgacgacgagccggaggagcaggatgttgacatcgagaaccagtactacaactccaaaggtatggttgagacagaccctgagggtgcacttgctggcttcgatcaagtagtacgtatggagcctgaaaaggctgaatggggtttcaaagctctgaaacaaacagtgaagctgtattataagcttgggaagtacaaagaaatgatggatgcctatagggagatgttgacatacatcaaatctgctgtgacacgtaactacagtgagaaatgtataaacaacattatggattttgtctccggatcagctagtcaaaacttctctcttctgcaagagttctaccagacaacactgaaagcacttgaagaggcaaagaatgagagattatggtttaagacaaacctgaagctttgcaaaatttggtttgacatgggggagtatggccggatgagcaagatactgaaggagctgcataaatcttgtcaaagagaagatggttctgatgatcagaagaaaggcacacaacttttggaagtctatgctattgagatccaaatgtacactgaaacaaagaacaacaaaaaattgaaggaactatatacaaaagctctttccatcaaatcagcgatacctcatccaagaatcatgggtataattcgtgaatgtggtggaaagatgcacatggctgagaggcaatgggcagatgctgcaactgatttctttgaagcattcaaaaactatgatgaagctggcaatccgcggagaattcaatgcctgaaatatcttgttcttgcaaatatgttgatggaatctgaagtgaatccctttgatgggcaagaggctaagccgtacaaaaatgatcctgagatcctcgccatgacaaacttgattgcagcatatcagaagaatgacatcatggaatttgaaaagattctaaagagcaacagaagaacaataatggacgatcctttcatccgtaattatattgaggacctattgaagaacatcagaactcaagttctgctcaagcttattaagccatatactagaatcaggattccattcatttcacaggagctaaatttcccagaaaaggatgtcgagcagctcttggtctcactcattctggataaccgaatccagggccacatagatcaggtgaacaagttactagaacgtggtgacaggtcgaagggaatgaggaaataccaagccatagacaagtggaatactcagctgaagaacatctaccaaacggtgtccaacagagttgggtga</cdnaseq>

Protein Sequence

<aaseq>MGSDADMEDYGFEYSDDEPEEQDVDIENQYYNSKGMVETDPEGA LAGFDQVVRMEPEKAEWGFKALKQTVKLYYKLGKYKEMMDAYREMLTYIKSAVTRNYS EKCINNIMDFVSGSASQNFSLLQEFYQTTLKALEEAKNERLWFKTNLKLCKIWFDMGE YGRMSKILKELHKSCQREDGSDDQKKGTQLLEVYAIEIQMYTETKNNKKLKELYTKAL SIKSAIPHPRIMGIIRECGGKMHMAERQWADAATDFFEAFKNYDEAGNPRRIQCLKYL VLANMLMESEVNPFDGQEAKPYKNDPEILAMTNLIAAYQKNDIMEFEKILKSNRRTIM DDPFIRNYIEDLLKNIRTQVLLKLIKPYTRIRIPFISQELNFPEKDVEQLLVSLILDN RIQGHIDQVNKLLERGDRSKGMRKYQAIDKWNTQLKNIYQTVSNRVG</aaseq>

Gene Sequence

<dnaseqindica>113..122#211..303#2682..2760#4083..4323#4406..4480#4572..4706#5246..5433#5527..5595#5672..5762#5874..6008#6435..6547#6632..6722#aactgcaaaccgctgcggtctcggaaaccctagctctcgccccctcccctccctctccgcccgtcgccgcgcgggtcgcctcctcctctccgccgccaccgccgccgctgacatgggctccggtaatccccgatatcccgattcgcgccctcgctcgattgtcgtttccgcacccccttctctcatccccgtgatcggttccttttccagatgcggacatggaggattacgggttcgagtactccgacgacgagccggaggagcaggatgttgacatcgagaaccagtactacaactccaaaggttcgcttccaatctctttcattcttgtgtttcctcggcggtgcgttttctcggaccctgtgtatgtagtgtggtagtgtagtattcgaggagaggccaccatgattgtgtgccagccaaatccctgatttttagctgttctcttagggttcccttctatgatgcatgtatgtatgttgctttgcttttgcgtgtaattgccggtttaactgtgactttgttgatgggcatgtatgtatatttttcttgaatttcttaggacgtttttttttaaacctgaccatgaatatcctacaccatcagaatcttaataaagtgaaagtactacttgcttatttccaccgactgtgtggttagtcctattgtgtcccttgtaattaagaactaacattttggttctgcgaaaaaaaaacacttcccaactaaaaagggacatttagtttgtatgaaaactgaatacctgatagttgttgcttcatgagcttataaatcatgccactattaaaatacaaagacttagttgggcatgtgcattgttttctttgaatacatctgattgaactgcctttacctttctgtgtatggaacatttggaaagatttttttttaatgattcactttctacttttatgaaagataatcttcactgctataattttacatgactaaattaatttgaggatcgataatttcttggaattcatcatttgcttctaaagatcaacgtagaattttctagccttataaaggaggttaaattaatgccaccagttgttataaacataagggctttacaaatttgtgcacataatcttaacaggcggactactaattatgcagtgtctttcctcaaaaaaaaaaaagaaggaaaaaagccgatatgtttgtacaaacccaatcatggttgttgtggcatcgcctagacaatgcccttttcttgatctggccttttcttcactccggtagttaagaacctaggtccagagtctggcctgcacatcttaccgatgcctatacagtgccagttaggtggtgcacccatcttttggatcagggaagggaaaaactgaagaggaggcccaaggactagttctcgcaacattgaagagtcacactatgttccaatttaccaatacggaaaatagagtttctctagtaattgcgctcttagacaactaccatttggataggcagggacaattaatccatagttacgtgaataatggaatgcatggggatccaaaaaaggaaaacaaaaatttctatgatatccttcttttccatggatatgtattaagtgcaatagtgatgattcattcttgtaaagtagtgtatctgagatggcaattgggatctataatagagggctgcctatgcccaaaaccgatgattcacttaccttactccatgagtgccccttcttttttagaaagacgggtctcacttatcaaaagtcatagcagtggcatctaggagagtaggaggcctgaggaggatgctggcagaggcttaccttgccttggccatatatgtggtcatccaggatatgctagctgtccatggcgagcatctgggtggggtcagctggcagtgtcacgtgactgtgtgagggagggggcgttaacgagtgtgcatggcctatggtggagtaggtatagagaaaagaaggttaagagaaggaataaccgaagaagggaaggtgtggtgtactggtgttgttggcgcagcaatgctgtcactgtctccaattatccattgctgcttctcatttgctctgctaacctgctaagcttgattttcttctttctgctcagctttgctcatgtattctcctctactaaagctcaccttaccttgcattggggatgccaaggtggccgcttggacgccgttgcatcctcaagtgctgtggctgtcggtttgtcccatgacgaccttggaatcaaattgatcacaaatagtgttatctggcagaaaaaaaaaaactccctctattgatttttattaggcatatgcccgctttcgagaagtaaaatttcgtagattttggtcaacaattagtcaaaatatttttaaaaagttagttttatggctattatgattatattttattatgtgaaatgaatagtcaaagtttaatcttgaagtttttttttttcaaaataaaatatgccctaaaaagccaacagaggtagatgaattatggctactcctatttcttgtttctgaaatggaaagctagttcatatggtctgtgaggtgggagcatggggattcttgcataaattgtgtttgtcttttgttaccacacaattacaaatgctacttcatgtatatgctgctttatgatatgacattgctcaaatatcttattacaggtatggttgagacagaccctgagggtgcacttgctggcttcgatcaagtagtacgtatggagcctgaaaaggctgaatggtaagccttatataacattttactagttgataccctgctgaaatatcttattacgcatgtggtaaggaaggtgtcattttgaacaaattctatggttgcaaaatgaaataaaatatataattgaaaacattcttctggtgatgccgtatttttaactttcacatttaatatttcattcttgaacgtctgtatgcatcctattggttagacattaaaaccttgccttctgtgcggttcacaaaagatgttggattttattgtcttgtgggcttgcctaaagtgttgggctcagcagaatgaatcaaacacccgaggacctttagtaccgtaccaaaccagcagccttcgcgccaagcgacgaccgcccttgtccctttcctttttccattctgcctacttcttagctttgttccgtcagtctaaggcaaagcttaagtggttcgcctacctatccatctgtgccactgagtactcattcaaaggtagagaataagaggggtgatatggctttcaccatgtaagatagatttagtaagaactacatttactggggatcaattgtatctataatgatgtcgattttagttgctgtataggtccatctacaatataaagttcctggacatatgaactctaaattctattggcattcgactgtcaacatgcccatatgagctacttgttatcgttaagcttcagggactccataccttcatgtacttgtatgttttttatggtagcacagtgcctgtatgctgttaagactttcaattagatatagtctgtattctgatcctacaaatgccaagataattgccctaaaaatttaaaaataaataaggtttcatgaaccggtcttttatatatttgaatgaatgtgtgcatggtgcagtattagaaaaaaaattacaaacaacaaattcttgtttacgtagatccatccacagaagattaacaatttaagatataacatgacatcactagcacctactctttgtgcagtaaagatgtatgaaaattgtttatcacaaaccatcagctcgagccttctcaaagttcagacctaagatcttaaaacctcaggtcatattatgttgaccaggaatccccccagattcccaatataggatatgcttgagccacaaatagaattctaactgaagtattagtggcctttttggagggctgcatattttgatggacatccttttttttcaatggtaatgtgttataagttgtcagtgaaatcaagtgtatctgtatccaacagccactcatattttagagatctgacgtcagttctgtaactcttttctttataggggtttcaaagctctgaaacaaacagtgaagctgtattataagcttgggaagtacaaagaaatgatggatgcctatagggagatgttgacatacatcaaatctgctgtgacacgtaactacagtgagaaatgtataaacaacattatggattttgtctccggatcagctagtcaaaacttctctcttctgcaagagttctaccagacaacactgaaagcacttgaagaggcaaagaatgaggttcagtttcttgccttatccaaattagaattttatgtaccaaaagattgttctttataccttgctattctttgctgcgcagagattatggtttaagacaaacctgaagctttgcaaaatttggtttgacatgggggagtatggccggatgagcaaggtgcttatacaagtttctctagtcaattggttttctttacatattctgcagtcattactctaattattttgctcgtaacttcttcctgtagatactgaaggagctgcataaatcttgtcaaagagaagatggttctgatgatcagaagaaaggcacacaacttttggaagtctatgctattgagatccaaatgtacactgaaacaaagaacaacaaaaaattgaaggtaagacatattgtcagtctttttacacgtgattattttggattacaggttactactgttcaagattttgtgtcagtttcttgttcaatattgcagtactctagctgtatatttgttaaaaaacacagttgactgcagccagaacgcagatataaagataacttttcatccttctgctgttttgccggtttattcctttgacaataatttgtataggttgatatgttactgataccaggatatttgccactgagtatacaattatacatttgcataatatgcttgcctgaaatcaggtggtatagtgagcacacaacttccttgctaaattattgattttctacagctttataaaataaaacctacaaagctgatgcctgtcttttgtacctattttggacaatatgtttataagagcattgactatatttagcctatttcatttatagtactatgttgacccatattgggttcaaacctttctcctgccttaggcagttagcatgaaatgcactttctgaagtgaacctctgctgcaggaactatatacaaaagctctttccatcaaatcagcgatacctcatccaagaatcatgggtataattcgtgaatgtggtggaaagatgcacatggctgagaggcaatgggcagatgctgcaactgatttctttgaagcattcaaaaactatgatgaagctggcaatccgcggagaattcaatgcctgaagtaatcaaatcatctgcatttcttttccattttaatttcgtatattgataaatttagaacttcctcatccttttttattgtactgcatattagatatcttgttcttgcaaatatgttgatggaatctgaagtgaatccctttgatgggcaagaggctaagccgtaagacatttgatgattccctcataaatcttgtatcttaatttcatgccaccctgtaactccttgatgctttcaggtacaaaaatgatcctgagatcctcgccatgacaaacttgattgcagcatatcagaagaatgacatcatggaatttgaaaagattctaaaggtcagtgttattgaacattatccatcttgctattttctgcagcaattctaagctagttattctgttaattgattctggatttctgatgtgattgttacaaacaaaattcagagcaacagaagaacaataatggacgatcctttcatccgtaattatattgaggacctattgaagaacatcagaactcaagttctgctcaagcttattaagccatatactagaatcaggattccattcatttcacaggtgaatactcgctctcttaaatgttcatgataatctttgctgacagaaattgatgtgagctaaagattagtattttgtctagataatctgttctttgtccaacaccagataatgtgcatttgctcaataccagaagaatatgacaatatcttgtgataacaaatggtgcatgaaaattattagtaacatggaactttggtatatactcgtgctattttaggaagttgcaagaaatatagtttgaagcttgatctttttctgtcgtgtgcccaaactaggtgattccagttcaattgaaatcatgtgcgcttaatcgtgcagaccctatgctgttcctcacggaggtctagttttttgtgaaatttgctttcgtacagtgtacaagatgccttgtcatcgattgttctgtcaatgttttgcatgtaggagctaaatttcccagaaaaggatgtcgagcagctcttggtctcactcattctggataaccgaatccagggccacatagatcaggtgaacaagttactagaacgtggtgacaggtgcgtattccccctgctttttccatcacattgttctatctatgcgattgcttttctgaaggtgatccgattcgcatttcgcaggtcgaagggaatgaggaaataccaagccatagacaagtggaatactcagctgaagaacatctaccaaacggtgtccaacagagttgggtgagagagatagcaggatgcctgggctgcactgcgcttggcacctgcttgcacgttttgttgtggtgggtaaatgcagcgagtgtttggtgcgtgcattacatttgagataggctcttggataggtaaagaaaaaaacagtctcgtgtattaaacatggtactcttttgcgcgccatgtgaagatgctgggattttgtcctgaactgaatctatctgcaaattccaacccctctgaaactatactagcgtcaatggctcgaaacttttggttttgttggcattgccgcactagcaaattttggtatggtagagagaatgtttggttccgtg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0279200, RefSeq:Os01g0279200