Os01g0280500

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Revision as of 04:35, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0280500| Description = Similar to Eukaryotic translation initiation factor 6 (eIF-6) (B4 integrin interactor) (CAB) (p27(BBP)) (B(2)GCN homol...")
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Gene Name

Os01g0280500

Description

Similar to Eukaryotic translation initiation factor 6 (eIF-6) (B4 integrin interactor) (CAB) (p27(BBP)) (B(2)GCN homolog)

Version

NM_001049289.1 GI:115435991 GeneID:4326910

Length

1889 bp

Definition

Oryza sativa Japonica Group Os01g0280500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:9966141..9968029

Sequence Coding Region

9966428..9966688,9966798..9966907,9967025..9967156,9967449..9967579,9967663..9967759
,9967887..9967896

Expression

GEO Profiles:Os01g0280500

Genome Context

<gbrowseImage1> name=NC_008394:9966141..9968029 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:9966141..9968029 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgtcccgcgtcaggtttgagaattccagcgagattggagtgttcgcgaggctcaccaacgcctactgcgtgctccccgacggcggagcagagaacttcttcagcgtgttcgaatccgagctcgccgacgtcgtgccggtggtcaggacgtccatcggcggcacgaggatcatcgggaggatgtgcgtcggcaacaagaacggcctcctcctgccgcataccaccacagaccaagagctccagcatctgaagaacagcctgcctgatcaggtggtcgtccagcgcatcgaggagcgcctctccgccctgggcaattgcgttgcctgcaacgaccatgtcgccctcacacacccagacctggaccagggaaccgaggagatcatctcagatgttcttggtgtggaggtgttcaggcaaaccattgcaggaaacatcctggtggggagtttctgcgccttttccaataaagggggccttgttcacccgcagacgtcggtggaggaccaggcggagctgtcgacgctgctggaggtgccactggccgccgggtccatcaaccggggcagcgaggtggtggccgccggcatggcggtgaacgactgggcggcgttctgcggcgccgacacgacggcgacggagctgtccgtggtggagagcgtgttccggctgagggacggacggccgggggcgctcggcgccgacatgagcaggtcgctcgtcgtcagcagctacctatag</cdnaseq>

Protein Sequence

<aaseq>MASRVRFENSSEIGVFARLTNAYCVLPDGGAENFFSVFESELAD VVPVVRTSIGGTRIIGRMCVGNKNGLLLPHTTTDQELQHLKNSLPDQVVVQRIEERLS ALGNCVACNDHVALTHPDLDQGTEEIISDVLGVEVFRQTIAGNILVGSFCAFSNKGGL VHPQTSVEDQAELSTLLEVPLAAGSINRGSEVVAAGMAVNDWAAFCGADTTATELSVV ESVFRLRDGRPGALGADMSRSLVVSSYL</aaseq>

Gene Sequence

<dnaseqindica>1342..1602#1123..1232#874..1005#451..581#271..367#134..143#atagtcgacccaacacagcgacaccaccagcgcccacctccatcgccgccgctcccctcgcctcccgcggtttacgctcgcgcgcaggagttcttggttggctgactgcgagtaagcgaatcatccggcaatcatggcgtcccgtaagtctctctctcccggtgatctcgtatcctgcttctttttttttttttttgttcttgttgattttgccaattcgaatcgatcggtgtatgattttttttttcaaaaatcggttctgcattgcaggcgtcaggtttgagaattccagcgagattggagtgttcgcgaggctcaccaacgcctactgcgtgctccccgacggcggagcagagaacttcttcaggtttgcgtagctgcattgcattggcgccgtgtgaatcttggatttttagcattggtttgaatccgatatttgttatggtgtagcgtgttcgaatccgagctcgccgacgtcgtgccggtggtcaggacgtccatcggcggcacgaggatcatcgggaggatgtgcgtcggcaacaagaacggcctcctcctgccgcataccaccacagaccaaggtatcaacactactcagtactcaccatggatgcctctgctttactctgcttgtcgtcccggaatattttcttcagtcaaattcagtttcaagtactcagattttaatcaaactgagataaacaagagatctgatttcaccaccaggattcacttgtgaattactccaatttgtaaataatggggacaacgaactgtttttttaaaaaaaaaaattaaaaaacaagaagtcctcttggtggcatatcttctttctgataagaaattgacctgacatgttgttgatgtttccagagctccagcatctgaagaacagcctgcctgatcaggtggtcgtccagcgcatcgaggagcgcctctccgccctgggcaattgcgttgcctgcaacgaccatgtcgccctcacacacccagacctggaccaggcaagtcatctctttggaaaatctactccaaaatcacagagttgagcatataggagcaattagcaaacaatgccacagcttaagcccatctgaccaaactacattgcctgtaaacagggaaccgaggagatcatctcagatgttcttggtgtggaggtgttcaggcaaaccattgcaggaaacatcctggtggggagtttctgcgccttttccaataaagggggccttgtaagtttctatcacaattaaactaatcaacatcactaatcactggagtactagttattaggccatggcactggagcttgcagttctctgaaacctgtgaatgatgcaggttcacccgcagacgtcggtggaggaccaggcggagctgtcgacgctgctggaggtgccactggccgccgggtccatcaaccggggcagcgaggtggtggccgccggcatggcggtgaacgactgggcggcgttctgcggcgccgacacgacggcgacggagctgtccgtggtggagagcgtgttccggctgagggacggacggccgggggcgctcggcgccgacatgagcaggtcgctcgtcgtcagcagctacctatagagagaggaggagggaccggtttttgctttgggggattttcggtcagaattcaagaatgcttaaagccaaaaatatcccttgctgtatcttgagtagtgacagtaaatgttcgcgtggatcgatgcagttttgatcctgtgtcaaagatgaattttgtatctttgcaaatctggaacgatggaagtgcttttttgaagtcaaaatataatttagtattatgctcagctcaggaaagaatgttgtcttaaaccagaatattaaacaaagtgaaggtagccaacatatgt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0280500, RefSeq:Os01g0280500