Os10g0479700

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Revision as of 08:42, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0479700| Description = Protein of unknown function DUF250 domain containing protein| Version = NM_001071405.1 GI:115482553 GeneID:4348916| ...")
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Gene Name

Os10g0479700

Description

Protein of unknown function DUF250 domain containing protein

Version

NM_001071405.1 GI:115482553 GeneID:4348916

Length

6990 bp

Definition

Oryza sativa Japonica Group Os10g0479700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:18469120..18476109

Sequence Coding Region

18472925..18473054,18473231..18473412,18473495..18473565,18473693..18473825,18473959..18474120
,18474799..18475089,18475684..18475827

Expression

GEO Profiles:Os10g0479700

Genome Context

<gbrowseImage1> name=NC_008403:18469120..18476109 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:18469120..18476109 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcgtcggcgacggacggcgcggcgtcgaggctcggcgtcgccggggctctggggatgtcggtcacgtcgtcggtggctattgtcatctgcaataagtaccttatcagcaccctgggcttcttcttcgcgacgacgctgacgagctggcacctgatggtgaccttctgcacgctgtacgtcgcgcagcggctgcggttcttcgaggcgaagccgatcgatgcgcagaccgtcatctccttcgggctgctcaatggtatctccattggcctcctcaacctttgccttggattcaactcagttggcttctaccagatgaccaagctggctatcataccattcaccatgctcttggaaaccatctttcttagcaagaagttcagccggagcatcaagatctccctcatggtcttgctccttggagtcggtatcgcgtcggtgaccgatctccagctcaatctcctcggctcgatcatcgccgtgctcaccatcgccgcgacgtgcgtcagccagattctgacgaaccaaatccagaggaggctgaaggtgtcgtcgacgcagctgctgtaccagtcgtcgccgtaccagtccgccgtgctgctcgtcaccggcccgttcgtcgacaagctcctcaccaaccgcgacgtcttcgccttcacctacaccttccaagtcgtggcgttcatcgtgctgtcctgctcgatcgcggtgtgcgtgaacttcagcacgttcctggtgatcgggacgacgtcgccggtgacgtaccaggtgctggggcacctcaagacgtgcctcatcctctccttcggctacgtcctcctcagggaccccttcaccttccgcaacgtcgccggcatcctcgtcgccatcttcgggatgggcctctactccttcttctccgtctccgagtcccgcgacaagaagctcgccgacggcccctcccctcctctccccatctcttcctcccagatggcggagatgaaggactcggagccgctgctgggcggcggcggcggcgcggcggcgaagagctcgccgtggaacgaggtgaaggggttgcagagcttcgacgaggtgccgaggacggcgaagagcgcgttcagccggccgtga</cdnaseq>

Protein Sequence

<aaseq>MSSATDGAASRLGVAGALGMSVTSSVAIVICNKYLISTLGFFFA TTLTSWHLMVTFCTLYVAQRLRFFEAKPIDAQTVISFGLLNGISIGLLNLCLGFNSVG FYQMTKLAIIPFTMLLETIFLSKKFSRSIKISLMVLLLGVGIASVTDLQLNLLGSIIA VLTIAATCVSQILTNQIQRRLKVSSTQLLYQSSPYQSAVLLVTGPFVDKLLTNRDVFA FTYTFQVVAFIVLSCSIAVCVNFSTFLVIGTTSPVTYQVLGHLKTCLILSFGYVLLRD PFTFRNVAGILVAIFGMGLYSFFSVSESRDKKLADGPSPPLPISSSQMAEMKDSEPLL GGGGGAAAKSSPWNEVKGLQSFDEVPRTAKSAFSRP</aaseq>

Gene Sequence

<dnaseqindica>3806..3935#4112..4293#4376..4446#4574..4706#4840..5001#5680..5970#6565..6708#agcgacgattaacaaaaaccacaaccattattaatcctcctcctcatccatcctcttcaattcctctccgtattaatcgaaaccacaagagcgagctagctagcgatatatccccctctctctctcgtctcaagaagatcgatctccaaaatcgaacaaaagcagtattcgatcaggtgttcgtcgtcagaagaagaagaagcgagcgggtgcgtattcatcgtcataatccatcccccccgtgtttatcgatttctcctctcgatctcctcgtgatctctatctcttcccgtctggattaattctttttttttgggtttgtttcgatcggttgaaaatttggggagtgaattccgctgcatgcatgcgtcgtttccgtttgcgtttgcgttgctgctgaagttattatactgctgctccctgaaaaccatgcgacatctctggcttgtattcttgtttgttttgtcttttttccccttctcgatcgatagaacggattgattggatatggattgcatatatatctctctgtgtgtgtactttgcgtgttgtgcttgtttgatcgagtcgtttcgttttggttgaataattggcatttcatcgagttggctagctcaacgcacgcacgtcgcaaagaaaggaatgggttaactgcgagtttctctttattttaatccttttatatggtgaccatatttcctgccttttttattattttttttatttttttttgtctatttagctagtacgtacgttccctaataagctttgcaagaggctgacttcggttttggtgtacttcatgaatcatgtgatcgagattatgcagctagtattagctatagcaaagtcgttcctagctgttccagcagcttatttatttagttattcaatccatcaattcagaggtgtcgatcatttgcatcgtttttatttccgctcactggctgagataagtgggcatgattgatcactttgtcccgttccgtgcaattgctgacgtcacacgccgtctgacgtggcggtgccacgctggcggcatctccctcgcgattcctttggctcctgagcgaaccttcatctcgcaattgcgcacgaggccgacctaatttaatttcgggcgtgggtgaccgtcgcgatggaaatttctcagctatcatatttaataatccctctatcccaaaatataagtgatcaatcatatatgacatcgttttttggatagagggagtgcgtaagtactcattccattttatgatatatggtacgtttaactttttaagatgcgattgccgattgatcatttatcttattcaaaagaaattacgtaatctattatattattaaaggattagaaaaatgagcctccacgttcactctcatggcctagaaattctcacattaatcggagaaaaagaaaaggtagagtccatatagaaatacaatttagaaatagctgaaattcagaattaaaaaataaggaatattagaagaggagactggagtccatatagaaatacaattaggaaataactgaaattcggaattaaaaataaggaatattagaagtagagtatagaatccatatagaaatacaattaggaaataattgaaattcggaattaaaaataaggaataatagaagtagagtatagagtccatatagaaatataattaggaaataatagaaattcagaattaaaaataaggaatattagaagtagagtatagagtccatataggaatttaaaactaactaaaatttggaataaacataataaaattaaaagtagagtttagagtccgtataaaaatacaatttacaaataactaaaattcgaaattaagaaaaacatgggaagaagagtttaaagtcaatataataatacaatttagaagtaactgaaattcgaaattaaaaattaaagaatattgaaaggtgagtttagagtccatatagaaatacaattagaaataataaaaattcagaaataaaaataaataatattagaagaagagcttagagtctatatagaaatacaatttacagaaaattcggaactaaaaaaagaaatattaaaagacgagtctacagtccatgtaggaatatatataatttacaaataactaaaatttgatattaaaaataattgataactaacatgtatataaaatacaatatgaatattacacattagtagttttgtaaagttattgtaaaatttaaaattatgttgtcattttaatatatttgaataatataatgcgaaaacatatatgctattatatgagagaaaatataatgatgctagctgcgcaatctgcgcaagccaccatactagttatcatttattttagcaggatgcctctcttttttttaaaaaaaaaaaaagcagatcttgccttgagaatgacttaggaattcaagtgttctagagaaaggtaaaaaggattttatttccctagaaattttccttggacacgcacattagagtttccttgtcctaataatggacaagaatctcacacgtcccagcctctacctcgtttgactagctacatatacgttactagcccaaatgtacttcctgccgaacaaattaaataatgaccttggctatagcaaattactgctcagatcaagagccctagagctcagatttcaactaaattattcaatattaggcgatcgaagaccatgcatgcagtctcctatgtacagattggaccatcacatgtgtcaattatagtactagtactagtcaagagtacgatagtgatcgagtactactccctccgtcccctaatataagtgattttaacattttgcttatactgtttgaccattcgttttattcaaaaaattttaaaattattatttattttatttgtgacttactttattatccaaagtactttaaacacaaccttttgttttttatatttgcacaattttttttaataagacgagtggtcaaacagtgcaagcaaaatgtcaaaatctcttatattaaggaacgaagtgagtactggtagttagcttggacgccattgatgattgatctcttgtgctgttgaagcgttgaactgctgaagcatccgtccatttcatatccatctgccacacacacagtgctgatgatgtgaccatctaccaaatgagtatacatatataaacgtaagatggtcataaacactccaattattttgtgtgttcttgtgatgtgagcaccccattgttcggcacatgtattgttggctgttgagcattgtcaatataggatatgcaattaagcagacaaacatgttaatttcaggtcactcgataactgaaacttgggtgtgataactgaactaaccgcagtcatatgcctcgatcttacaacagaacatgacagaaaacccaattttcagattctactagtgtacacttctccctgtcacattttggtagcatgtcatataatgcaaaaagaaatggagcaatgaatagtgagttcatcaatgttgccatgaacacatgcttcacatggacgctatggtgctctctaccacacccccatcacgcagaggttgagccgtacagtaatggaggtcgccatcgggatcgctgccgtccatgtcaacgctcggttttccttaccgagatcacgtctctcctaaaaacaaatcaagaggggacagttcttctttcacctgtgtatttaattgcgtggttcaagattttgtaacagaggttttcctcctttttgtttcaccgatgggatcttcttcttccaccagataggtgatcgcctgtgaggagatgtcgtcggcgacggacggcgcggcgtcgaggctcggcgtcgccggggctctggggatgtcggtcacgtcgtcggtggctattgtcatctgcaataagtaccttatcagcaccctgggcttcttcttcggtcagtgaaaatttctttttttactttcagagagtttcagatactgtactccgtccgacaaattttttgtcaagtagttttactggttgtaattttgtaaattgtaatgtctggtctctggtgtgtagagatgtttctgaatgtcattttgtgttttggaaatgtggaaaatgcagcgacgacgctgacgagctggcacctgatggtgaccttctgcacgctgtacgtcgcgcagcggctgcggttcttcgaggcgaagccgatcgatgcgcagaccgtcatctccttcgggctgctcaatggtatctccattggcctcctcaacctttgccttggattcaactcagttggcttctaccaggcaagcaccattcactttgctgaccccaatcactgcattttggttttctcacttctgaaatcatgggtgtttttctctgcagatgaccaagctggctatcataccattcaccatgctcttggaaaccatctttcttagcaagaagttcaggtcattgtcaaattcacacctcactctctgatagcactatgttgtacagaatcaacttgactttgatgcaaccaaagatgttttttttttctcacaattcacaacactgaacactactgtcctgcagccggagcatcaagatctccctcatggtcttgctccttggagtcggtatcgcgtcggtgaccgatctccagctcaatctcctcggctcgatcatcgccgtgctcaccatcgccgcgacgtgcgtcagccagattgtatccttaattttctagctcaaatgaactaaaatcaggaactaaacccgtcacactctgaacattattcgttctctgaactctacaaatttgtgtgattattgtctctccttcacctggagcgaaactaaagctgacgaaccaaatccagaggaggctgaaggtgtcgtcgacgcagctgctgtaccagtcgtcgccgtaccagtccgccgtgctgctcgtcaccggcccgttcgtcgacaagctcctcaccaaccgcgacgtcttcgccttcacctacaccttccaagtcgtggtacgtacgtataccttggtgtgtcaagccatatcatgctagtgaaggaatgacgtcgacgcggccgccatggttgacgtgattaaggccctgtttgattcagcttaggattattataatctggattattgggagtaagctgaaacaaacaagtagattgttatgatagattattataatctataatccagattagtactccctccgtcctaaaatgtttgacgtcgttgacttttttaatcatgtttgaccttttgtcttattcaaaaaatttaagtattttttaattcttttcatatcatttgattcattgttaaatatatttttatgtatacatatagttttatatatttcataatttttttaataagacgaacggtcaaacatatttaaaaaagtcaacggcgtcaaacattttgggatggagggagtataatctaataatcttctctggaggagctattttcagattattgtgtgcctaaagacccactacccttattagatgcctcaaataattcaaagaaacaaacaacttacaacttattctatgttagcttactataatctagcttatagtaatctgattgaataatctatattataataatcttaagcttaaacaaacagagcctgagctgacatggtgttcttgtggttgttgttgttgaattgcaggcgttcatcgtgctgtcctgctcgatcgcggtgtgcgtgaacttcagcacgttcctggtgatcgggacgacgtcgccggtgacgtaccaggtgctggggcacctcaagacgtgcctcatcctctccttcggctacgtcctcctcagggaccccttcaccttccgcaacgtcgccggcatcctcgtcgccatcttcgggatgggcctctactccttcttctccgtctccgagtcccgcgacaagaagctcgccgacggcccctcccctcctctccccatctcttcctcccaggtccatccaccatacctcactctagctactctctcactttttctatatatatatattttgaacttattcaatttttaattttgaaaacaaactttttcaatactactccctccgtttctaaatatctgacgccgttgaccttttaaaatatgtttgaccgtttgtcttatttaaaaaatttaagtaattattaattcttttgctattatttgattcattgttaaatatactcatatgtatacatatagttttacatatttcataaaagtttttgaataagacgaacggtcaaacatgtgctaataagtcgacggtgtcaaatatttagaaacggagggagtagcttttaatatctgaacccttttttgcgtaaaaaaaaatatctaaacctcttgatcacgccaaccaatctgatgtggcaaaacaacgttgccacaccaatctaaatggtgtgacaatgttgtcttgccacgtcatgataaaattgtcacgcccattacgaatgacttgactgtggataaaaggttcagattttggaaataagattatcgatcctagctgacatagtgacatgagtgtgcttgtgtgttgcagatggcggagatgaaggactcggagccgctgctgggcggcggcggcggcgcggcggcgaagagctcgccgtggaacgaggtgaaggggttgcagagcttcgacgaggtgccgaggacggcgaagagcgcgttcagccggccgtgacgacgacgacgacgagggcggacgcgtgcgcgcgtgacagctaggactgtagctagtgcaatttgggctgcgacagcacaaggagaatttggggggaaagaacatatcatatgcgtctcatctcaccgcagttctttctgttctttttttgttgtagatgatgacgtaatgtgttggtttgttgaaatttttaatggttcttgggaagcatcgagaggttctgacagatatgctaactccgttcacaaatataagcacttctagaaagggttaaggttatta</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0479700, RefSeq:Os10g0479700