Os01g0312500

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Revision as of 04:37, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0312500| Description = Similar to Pectin methylesterase isoform alpha (EC 3.1.1.11) (Fragment)| Version = NM_001049401.1 GI:115436215 GeneID...")
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Gene Name

Os01g0312500

Description

Similar to Pectin methylesterase isoform alpha (EC 3.1.1.11) (Fragment)

Version

NM_001049401.1 GI:115436215 GeneID:4327285

Length

8778 bp

Definition

Oryza sativa Japonica Group Os01g0312500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:11884567..11893344

Sequence Coding Region

11884573..11885161,11892452..11893143

Expression

GEO Profiles:Os01g0312500

Genome Context

<gbrowseImage1> name=NC_008394:11884567..11893344 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:11884567..11893344 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgacggagctctccgccgccatgaccaaccagtacacctgcctcgacggcttcgactacaaggacggggagagggtgcgtcattacatggagtccagcatccaccacgtctcccgcatggtcagcaactcgctcgccatggccaagaagctgcccggcgccggcggcggtgggatgaccccgtcatcgtcgtcgcccgacacggcgacgcaatcggagtcgtcagagaccacgcagcggcagccattcatggggtacgggcagatggcgaatgggttcccgaagtgggtgaggccgggagaccggcggctactccaagcgccggcgtcgagcatcacgcccgacgcggtggtggcgaaggacgggagcggcgggtacacgacggtgtcggcggcggtggcggcggcgccggcgaactcgaacaagaggtacgtgatacacatcaaggccggggcgtacatggagaacgtggaggtggggaagagcaagaagaacctgatgttcatcggcgacggcatcggcaagaccgtcatcaaggccagccgcaacgtcgtcgacggctccaccaccttccgctccgccacagtcgctgtggtgggcaacaacttcctggcccgcgacctgacgatcgagaactcggccggcccgtcgaagcaccaggcggtggcgctgcgcgtgggcgccgacctgtcggcgttctaccggtgcagcttcgtcggctaccaggacaccctctacgtccactccctccgccagttcttccgcgagtgcgacatctacggcaccatcgacttcatcttcggcaactccgccgtcgtcttccagagctgcaacctctacgcgcgccgcccgctccccaaccagagcaacgtctacaccgcgcaggggcgggaggaccccaaccagaacaccggcatctccatccagaagtgcaaggtggccgccgcctccgacctcctcgccgtccagtccagcttcaagacctacctcggccgcccctggaagcagtactcccgcacggtgttcatgcagtcggagctcgacagcgtcgtcaaccccgccgggtggctcgagtggagcggcaacttcgcgctcgacacgctctactacggcgagtaccagaacaccggccccggggcctccacgtccaaccgggtcaagtggaagggctaccgcgtcatcaccagcgcgtcggaggcgagcaccttcaccgtcggcaacttcatcgacggcgacgtatggctcgccggcacgtccgtccccttcaccgtcgggctgtga</cdnaseq>

Protein Sequence

<aaseq>MTELSAAMTNQYTCLDGFDYKDGERVRHYMESSIHHVSRMVSNS LAMAKKLPGAGGGGMTPSSSSPDTATQSESSETTQRQPFMGYGQMANGFPKWVRPGDR RLLQAPASSITPDAVVAKDGSGGYTTVSAAVAAAPANSNKRYVIHIKAGAYMENVEVG KSKKNLMFIGDGIGKTVIKASRNVVDGSTTFRSATVAVVGNNFLARDLTIENSAGPSK HQAVALRVGADLSAFYRCSFVGYQDTLYVHSLRQFFRECDIYGTIDFIFGNSAVVFQS CNLYARRPLPNQSNVYTAQGREDPNQNTGISIQKCKVAAASDLLAVQSSFKTYLGRPW KQYSRTVFMQSELDSVVNPAGWLEWSGNFALDTLYYGEYQNTGPGASTSNRVKWKGYR VITSASEASTFTVGNFIDGDVWLAGTSVPFTVGL</aaseq>

Gene Sequence

<dnaseqindica>7..595#7886..8577#cacgtcatgacggagctctccgccgccatgaccaaccagtacacctgcctcgacggcttcgactacaaggacggggagagggtgcgtcattacatggagtccagcatccaccacgtctcccgcatggtcagcaactcgctcgccatggccaagaagctgcccggcgccggcggcggtgggatgaccccgtcatcgtcgtcgcccgacacggcgacgcaatcggagtcgtcagagaccacgcagcggcagccattcatggggtacgggcagatggcgaatgggttcccgaagtgggtgaggccgggagaccggcggctactccaagcgccggcgtcgagcatcacgcccgacgcggtggtggcgaaggacgggagcggcgggtacacgacggtgtcggcggcggtggcggcggcgccggcgaactcgaacaagaggtacgtgatacacatcaaggccggggcgtacatggagaacgtggaggtggggaagagcaagaagaacctgatgttcatcggcgacggcatcggcaagaccgtcatcaaggccagccgcaacgtcgtcgacggctccaccaccttccgctccgccacagtcggtaagtacacgcatcctatctctgcattgatgaccatgcatgctaattgcctgcttgcacctgcaaattgattcccaacgtgtccagtcgacaggacagtacgccattgacaagtacaaacagtgcactagcttaactactaaccagagtgaagctgtagtgacagtagcggcgctgctgtgtgatgggtggaaaaattaaccagttatatatgctactgattggttactatatactccctctgtattttaattccgtattttaatgtatgacgctgttgacttttcgattaacgtttgactattcgttttatttaaattttttgtgcaaatataaaaatatttatgtcatacttaaagaacatttgatggcgaatcaagtcacaacaaaataaatgatagttaaataaattttttgaataagacgaatagtcaaacgttagacaaaaaatcaacagcattatatattaaaatatggaggtagtataattgttgggatacttacatagttagtccgtgcatacatataccatacattagcaatggcacattttaacataaatcggtgaaaataatgctggcggcattggtaaatgtagacagtacacatatattaccttagtagtgtttgtggatcaggttgggtcgttgaggtagcattttggaactacctctttggtgggtagtagagctgcggctaaccataggattggattctccaaaatcgttcttctaaaaacctaggtactcactacctttacgcacacgtgaaatgcgcctcacgtgaaagttagtgtggtacgtacatagatttaccactaatgtacatttctttaatcctaggaatatactagctaggaaggggtgaatgtggaccagtccaggatagctcttaatccatactattggttccattaataaacgaactaactaaatttgatatttacaaaaatggcatgtgcccactcttaataagatgcataaatgcatttgcaggaatttgcatgttgtgtgtctctttccgtaatcaaaaagtattagctcgattgtgagtacacatgcgccttctgtggactgacgaatacatacacgatggcatgtcgacgtccacccctgtattcgtcaagtcatcaaggccggaaccaaagtgatgtgactaccccgctcgcgcaccagtgtgtgcttgaaatactttttttttctaaaaaaaacatagtttttttccgaatgactggactaacaaatcctcagatttatgaagttactatcaatgtctcgttgttaacgagtacatcgtctatcatcgaaagaataattagctgtagatatgaacacccatgctaagtataaaacataaattcgaacggataagttttaaaattaaaaacctagccagttaagctaaccacgctcatttcacgtgcttgaaatacctagcagtagagttttaattgatgatgataagtatctttacgttggtctatttatagtattgtattatcattattattcattccaagtaaaattaatattaatcgttaatttattagctttattactaatatgagaaagaagtatacagttagtataaataaatataatttatcatattaaaaaatataaacagtctagatttattctaccagcactagcatagatcaatgttatcagtatctcgatccatatcacagtatcttacgatactatgattctatcaagctaaaacaatactgatcctatatagtatcttaattttcatagtatctcgatattactattcatttccacatcatcctacgaaatcttagttaatgtgccgattccgattctacgatcctacaaaatatatttaaaattaggtggattgaaaataatatgaataaatacactcaagtttacatataaatcaattaagtttatcaaaatcgatattatataatttaatttatacaacatattatatattttattaaaaaaatatatactttgtaaaatctgagagtattccgattctattctagtattccgatactataatgttacataaaaacgattctagctagtatcttgatactgattatcaagagagtctatttgtaaacacgtctcaaataataattaaagccactgtaacttatactagagatttgcggtacggtgcgggcttgcgcgaacaggagtaccaacgaaaaacactgctcgaccacgtgattgaagcggtgaaacacagttaaaaataaaacgttgtccttttgcatgcatatctgccgaacagtagagctgataggtgttctgcactagttccaagcgtccaccaaccactaccagaccagacgacgcgcagcggcacgcgcaggcggaggagctcaagtagtcgaaatgctcgctaccttgctgtacaaatttacgcacaccaactgcacatatggatgtggtccaaagtcccaactccaaagcggctctgagaaaataaaaatactcctaacacacaataaattaatttaatatagaatgtaagatatcttaatactacattcagatttatgaatactatactaagttatattacaccacatattagattaattaatgcattaatacttctagctagttaactagacatgcgagctatcccggttggaaatatccttgtacctgtactggatgaacgatggggatttaactggggtaactggggttagcagtgtagcgtgtgccaagcgggtacattcccatgcacacaatgctgccctgggcacgtacgtgtgtacgtcgtatatacttccatgtacgtattttatcggacacgccacgttgacagtggacaggagtacgtgtctctgtccactgtcggcatggcgttttctgatagatcagccacgcaaaggcctgcaagttctacaggcgcactaccagctaccagcagcttgaataccgtgaactggacagagacatgcctcttcagcatgcacgttgttaagccagcatcagccaaatttatttcactggtaattttaccatccttaaaaaactatctgaagggagcgtttaaaatttcaaaacaaaatttccgaaatccccacctccaaaaaaaaaaactacttcacccgagtttttttttcaaaattttcatttctttttttgaacttacaaaaaatattcagattttaccaaactttgttcaatttttaaataattttggaccgaaatcggtacatcccgatggaaataccttaacagatatgttaaaccttaccaggagatactgcattttctactataaattttgttatacttcacatagtaagtatcttgaggtaccggaattttttagtggtatttacaagtacttttttaagcaccgtaaatttctcttggttcatatatatagctatatattccctccgtctaaaaaaatcaaatcatgggttcgaatcttgacatatgtgtctcaaatttaggattgggtttttttttgggacggagggagtatatgtcagactttgttaaattagctagtgggctgatcttcgaattatagtccaaactaaaaaggattaaaattttagaatgattttaggggttttgatcgttatttccattgccggacacttcgttgctaagaagctacctggtaaataatgtaaaaataattattttaaaaattcaaacttcaaaatctctttggattataatcaaaatccgagacaaacaagtttaattagccgagtcaaatatttgtcgggttcctcgaattttcatactacaaacaagtttgtgcttttgctagcttgacgtggcgccgtccttttattcgcctagctttaaaaagtctgtgaaatgctatgggcctatggcaatcttgagcaaccttgttacacgtacgagctagccagccaggtcctagagattttgcctttccggctggccgcagcagcgcactgctctgcgtgtactgacaaaaatcgctacacgcgggttccctgtgctgtgcgattccagccgatcacgcggcgtgcgtgcccccacacaccggtgcctcctcccctgccgcgcgccgcgacgatcatgcaggcggtgctctgctctgtgcgtgcatgcgtgcatgcgtgcatgcagtccacctcatctcccggcgttgcacacctacgcagcagcgcaggcgacgacgcccgcccgtgccgtgacccaccgtgcgcggctgcgcgcgcgcggccggcgacctgtccccttcaattcctccttgctcttgtagcgtgtcgccgtgtcggtggcgagtcagtgctctgcccgcgcgtgtggcgcgcggatctcctgcgcggtgcatgcggtcgcggtcgcagaggccaccattggaagtttaaagccatttctaaactcaattcacatgagaaatagtgatcaccaacctgcatgcatacaggaacaaatgtagaacgaaaattattaccaagtgttctagatctaatactctgctttcatgttaacatgagctaggattaataggatttcaaagtttagcctgtgtgctgtgcaccacatggcatgtacttggattcgcccctgcatgcatatgctttgctccgccacgtgtctgagttggatagatagatgattgtaattttgcgatgactatgcgcaattgtattcctgtaaaagttatttgggtgactcaattactagaactcttgtgagatggatctcatcgaaagaggattatctgattttttttttctctttgactttgagccattgatacatgagctcgttggatagtggtcacctacccacacgtaagggaaaagtaagtccgaaaatttccacgcatctggacttcactcttagcactagtgtaaaaacgtagagtacatgttgctagctagcgagaatgcatgtacaagagcagtgtagattgtagaggaccgatggacagaacatatcaaagactgtagaccgttggttccgaatctaggccgtggtactgcttctccaataactattgttagcaggagtttattactacctctactttttatccaacgtttgaccattcatcttatttaaaaaatttatgcaattgtcatttattttattgtgactagattcatcatcaaatattctttaagcatgatataaatattttcatatttgcacgaaaattttaaataaaacgaatggtcaaacgttagtcgaaaagtcaacggcgtcgtacattaaaatacgaagggagtactatcatataatggaagggtggccatggaactatggtaagtcgtgttgcatcacacatataggttggagatagaagcaaattaaggtggagccatccatgaatcgatcgattgattgatcgatcccatctcatgcacacttttttctcccgctgcaggacaagtaatatatagctgtccaattattctctcatcttgctaccgctgtagggtagcgccccaccgcgctagtccttgcaatggccaataatggatcataagataagatcattggctcctactacgtatctagtgtatcacttgatgcctctaagggtgtgtttagttcacgtcaaaattagaagtttggttgaaattgtaacgatgtgacggaaaagttggaagttcgtgtgtgtaggaaagttttaatgtgatggaaaagtttaaagtttgaagaaaaagttgggaactaaaccaggcctaaataatattgcaggtgggctactgctgcttcctgcagattgcacgcactgaaatatagtggataagtgcgaatgcatgcacaatactcctgcctatctataattgtacggcagagacatttcctctaccttataactttattaaagggaaattaatagcgaaatatacttgttagacgccagatataatttgggatggttagaaacttagtccctccgtccacaatatagtataacctggaatcggataagacatttcatagtacagtgagtttggacatgagggtgtttagatacgttgtatcataaaatgtttcgtccagttctatattcttatattgaatggagtaggccagatacatgagaagagtagtagataataattggaaggcctgaaaatacctatgctgatctggaccaccccagttgcaacctacggggtcgaggtggcctacggttgattgagttactatgtgtcagggtatgaaaatataaaaggagaacgtacggttaaatcttcaaccacggactagggacatgcatgtttcgcagttttggtcgagtgtccactactactccatttgctgcttgttagttactagtactagtagccaaagttggaaggcacacccgtgatcatttgccattccttgcaaacagcaacctaggcatggcagatcaacagtaatatatgaatggtaattaaatactaaattcacgtacttggcaggtcaccagtaataaatcaatggtactcctcttgtcgtatgggcgtatggaagtcggtgctcctcatgtcgtcgaacggagtctgctaggatcgtgtgtatcctactaggacgcgcgaggggcggccgggcatttactggttgtcgctgtgtgcgaatccgcaattccgcgtcctcctcccgcatgccatgtgcgcgcggcttgatttcatcgcagcgcctgtccgtatccataatccttttctcagttatcatgcctttcctgtgtctggctggccatcctccaccgccgggaccgtccgggagatccggccagcgccgttcaacagcttttgttttcgattactcgtcgttgcctcgttgggttgggtaagtagaatttacggtaggaatttctcctcttactcgtacttctaccttctcactgcgctgacggcccatctatagtcagtgagcaaacaagcatgggcgcgaatttgctaaccgggccatgacaatttagcaccatgtgcaaatgggaacagttgggcctctagtggaaaacatgcatcctaaggtgtaggaataagtccactttaattacctcaattaatcttatttgtatccatcaaccgcagtattagatattttcaccctccaactatcgaaataggtgcaaaaataactctctcaatggtttttgttggcagtttacgctgatgtgactcattgacttagtctaaccaggcctacatcacgaactctcggtgtgttctatatttgagagagttaaagtggacttactcctatgatctatgaattaggcccataaaaactttaaccatatagaagaaagccttttcactaattatttggcgtgattgtggtgcagctgtggtgggcaacaacttcctggcccgcgacctgacgatcgagaactcggccggcccgtcgaagcaccaggcggtggcgctgcgcgtgggcgccgacctgtcggcgttctaccggtgcagcttcgtcggctaccaggacaccctctacgtccactccctccgccagttcttccgcgagtgcgacatctacggcaccatcgacttcatcttcggcaactccgccgtcgtcttccagagctgcaacctctacgcgcgccgcccgctccccaaccagagcaacgtctacaccgcgcaggggcgggaggaccccaaccagaacaccggcatctccatccagaagtgcaaggtggccgccgcctccgacctcctcgccgtccagtccagcttcaagacctacctcggccgcccctggaagcagtactcccgcacggtgttcatgcagtcggagctcgacagcgtcgtcaaccccgccgggtggctcgagtggagcggcaacttcgcgctcgacacgctctactacggcgagtaccagaacaccggccccggggcctccacgtccaaccgggtcaagtggaagggctaccgcgtcatcaccagcgcgtcggaggcgagcaccttcaccgtcggcaacttcatcgacggcgacgtatggctcgccggcacgtccgtccccttcaccgtcgggctgtgacactgtgatagagcgcgctgggttcagggcgtcacggcaataagcgtgctgtgctgacaagtgaagaaagagggggcaccagttcgaatcgaataccatgttgctgttgattcttttgtttttgggccgaaatgtgtaacatgtacctatacgtgattcagaaattaccattcgatacgggtccgtatttacgttctccat</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0312500, RefSeq:Os01g0312500