Os01g0329300

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Revision as of 04:37, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0329300| Description = Virulence factor, pectin lyase fold family protein| Version = NM_001049456.1 GI:115436325 GeneID:4326983| Length = 2...")
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Gene Name

Os01g0329300

Description

Virulence factor, pectin lyase fold family protein

Version

NM_001049456.1 GI:115436325 GeneID:4326983

Length

2789 bp

Definition

Oryza sativa Japonica Group Os01g0329300, complete gene.

Source

Oryza sativa Japonica Group 

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:12844403..12847191

Sequence Coding Region

12844443..12845666,12845758..12845925,12846072..12846116,12846218..12847060

Expression

GEO Profiles:Os01g0329300

Genome Context

<gbrowseImage1> name=NC_008394:12844403..12847191 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:12844403..12847191 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggccaacggcgagcgcggctgcacgccggagcacgcggcaaccgtcgacgatgacgacgacaatgtcgcgtcgcacggcggcggcggtggccgtgtccgtggtgctcctcctcctctcgtcgtgtctcccttgttgctcggaggcaaggctgcactaccaccggaggcagcaccggagggcgccgcaccgcgggcaccaccgcgcggcggcggcggcggcggcggcgacgaacggcggcagccacatctctcagccgcccgccgcgctgcctcccgacttcgacagcggggaatcgccggcggagacgccgggcttgcctccggctggcgtcgaggacgctccgccgcggcgatctccgcgtgagaagccgtgcccgacgatgcagcctcccgtcaagccgccggaggagttgtcgccggtgggcgcgccgaggtcgcgcgttcgggccatgccaccgtcaccctcgctgtcgccgccggccaaggcgccgtcacattctcacgctaagacgccgtcgatgccgccggcggagcggccggcgcttcctcccaccaaggcgccggcggcgatctcgccggccacgccacctcaactctccccagcgaacgcacattcgacgcaccatcacgcgaagccaccgtcattgcctccggccgagccaccagtgccctcgccgtcgccggagcatccaccgcggcactccccgtcaaagccaccggcgtacgctccggccaagccaccgacagcactacgtccggcgatccctccggccgcaatgccaaagccaccgtcagtcgctccggtgcagccaccgcagcggccgcctgccccggcaacaaagccaccgccgtcgtttccaccgcagctcgccccgacgatgccaccaccggcgcacgcgccggcggagacaccagcaccaccaacaacgccaccggcgctgccaccggccacgacggcgccatcaccgaagaacagctcatcatcaccacctccaccctgcaccggcggcggcggcggcatcagcaacgtgttcgacgtgagggcgttcggcgcgacgggcaacggctcgagcgccgacggcgacacgcgcgcgttccgcgcggcgtggaaggcggcgtgctcggcggagtccgccaccgtgctcgtgccgtccgacggcgtgttcaccatcacctccaccatcttcgccgggccatgcaagccaggcctcaccttccaaatcgacggcgtgctgatgccgccggacgggccggcgagctggccggcggcggacggccggcggcagtggatcgtcttctacagggccgacgggatgacgctgtccggcaagggcaccatcgaaggcaacggcgaggagtggtggaatctcccgtgtaaacctcacaggggccccaatggatcgaccctacccggcccatgtgagagccctgcactgatcaagttcgtggcgagcagcgacgtgagcgtgcagggcctgaggatggagaacagcccgcagttccacctcaagttcgacgggtgcagccgggtgctggtcgacggcctcgtcgtcagctcgccggcgtcgagcccgaacaccgacggcgtccacgtcgagaacacgagctccgtccggatcctcaactccaggatcagcaacggcgacgactgcgtcagcatcggcggcggctgctcgggggtgcgcgtcgagaacgtcacgtgcgtgcacggccacggcatcagcatcggcggcctgggcgcgcgcggcgcgcgggcgtgcgtgtcgaacgtgaccgtgcgcggcgcgcgcgtcgtcgactccgacaacggcgtgcggatcaagacgtggcagggcggcgccgggtcggtgtcgggggtggtgttcgacgccgtccagatggtgaacgtcaggggctgcatcgtcatcgaccagtactactgcgatgcgcacggcggcgccggcgccggctgcgccaaccagaccgccgccgtgcgcgtcgacggcgtcgcgtacagggggatccgcggcacgtacaacccgcgcggcggcggcggcgcgccggtgcgcttcgcgtgcagcgacaccgtcgcctgcacgggcatcaccatgaccgacgtcgagctgctgccggccggcggcggcgacgaaggcggcggtgccagcgccggcgcgaagctggccgacccgtactgctggaacgcgtacggggtgatggagacgctgacgcagccgccggtgcactgcctgcaggaaggtcgcccagagtcgctgcaagatcagctcgcaagctgctga</cdnaseq>

Protein Sequence

<aaseq>MGPTASAAARRSTRQPSTMTTTMSRRTAAAVAVSVVLLLLSSCL PCCSEARLHYHRRQHRRAPHRGHHRAAAAAAAATNGGSHISQPPAALPPDFDSGESPA ETPGLPPAGVEDAPPRRSPREKPCPTMQPPVKPPEELSPVGAPRSRVRAMPPSPSLSP PAKAPSHSHAKTPSMPPAERPALPPTKAPAAISPATPPQLSPANAHSTHHHAKPPSLP PAEPPVPSPSPEHPPRHSPSKPPAYAPAKPPTALRPAIPPAAMPKPPSVAPVQPPQRP PAPATKPPPSFPPQLAPTMPPPAHAPAETPAPPTTPPALPPATTAPSPKNSSSSPPPP CTGGGGGISNVFDVRAFGATGNGSSADGDTRAFRAAWKAACSAESATVLVPSDGVFTI TSTIFAGPCKPGLTFQIDGVLMPPDGPASWPAADGRRQWIVFYRADGMTLSGKGTIEG NGEEWWNLPCKPHRGPNGSTLPGPCESPALIKFVASSDVSVQGLRMENSPQFHLKFDG CSRVLVDGLVVSSPASSPNTDGVHVENTSSVRILNSRISNGDDCVSIGGGCSGVRVEN VTCVHGHGISIGGLGARGARACVSNVTVRGARVVDSDNGVRIKTWQGGAGSVSGVVFD AVQMVNVRGCIVIDQYYCDAHGGAGAGCANQTAAVRVDGVAYRGIRGTYNPRGGGGAP VRFACSDTVACTGITMTDVELLPAGGGDEGGGASAGAKLADPYCWNAYGVMETLTQPP VHCLQEGRPESLQDQLASC</aaseq>

Gene Sequence

<dnaseqindica>41..1264#1356..1523#1670..1714#1816..2658#aagcagcgctagctccacccagctaggccgtacgtcggcgatggggccaacggcgagcgcggctgcacgccggagcacgcggcaaccgtcgacgatgacgacgacaatgtcgcgtcgcacggcggcggcggtggccgtgtccgtggtgctcctcctcctctcgtcgtgtctcccttgttgctcggaggcaaggctgcactaccaccggaggcagcaccggagggcgccgcaccgcgggcaccaccgcgcggcggcggcggcggcggcggcgacgaacggcggcagccacatctctcagccgcccgccgcgctgcctcccgacttcgacagcggggaatcgccggcggagacgccgggcttgcctccggctggcgtcgaggacgctccgccgcggcgatctccgcgtgagaagccgtgcccgacgatgcagcctcccgtcaagccgccggaggagttgtcgccggtgggcgcgccgaggtcgcgcgttcgggccatgccaccgtcaccctcgctgtcgccgccggccaaggcgccgtcacattctcacgctaagacgccgtcgatgccgccggcggagcggccggcgcttcctcccaccaaggcgccggcggcgatctcgccggccacgccacctcaactctccccagcgaacgcacattcgacgcaccatcacgcgaagccaccgtcattgcctccggccgagccaccagtgccctcgccgtcgccggagcatccaccgcggcactccccgtcaaagccaccggcgtacgctccggccaagccaccgacagcactacgtccggcgatccctccggccgcaatgccaaagccaccgtcagtcgctccggtgcagccaccgcagcggccgcctgccccggcaacaaagccaccgccgtcgtttccaccgcagctcgccccgacgatgccaccaccggcgcacgcgccggcggagacaccagcaccaccaacaacgccaccggcgctgccaccggccacgacggcgccatcaccgaagaacagctcatcatcaccacctccaccctgcaccggcggcggcggcggcatcagcaacgtgttcgacgtgagggcgttcggcgcgacgggcaacggctcgagcgccgacggcgacacgcgcgcgttccgcgcggcgtggaaggcggcgtgctcggcggagtccgccaccgtgctcgtgccgtccgacggcgtgttcaccatcacctccaccatcttcgccgggccatgcaagccaggcctcaccttccaagtaaaaatatatataatcacgaacacacgccttgtccccgatttccatcaacttccttccccattgattaacccgtgacgtgtcgcggcagatcgacggcgtgctgatgccgccggacgggccggcgagctggccggcggcggacggccggcggcagtggatcgtcttctacagggccgacgggatgacgctgtccggcaagggcaccatcgaaggcaacggcgaggagtggtggaatctcccgtgtaaacctcacagggtacgtaattaaccaaccttaatctcgtgacacgacacgcttaatttcatctttgtaattagccgaccttaatctcgtgacatgagtgacacgcctatttttttctgtcagagagtacacactgactgtttcgtgtctatgttcagggccccaatggatcgaccctacccggcccatgtgagagccctgcagtaagtacactacaaatcgcattagctgcagtaatttaattattgagattgattaatcgagtgttaatcctagataaagtgagatatgttgtactgtgcagctgatcaagttcgtggcgagcagcgacgtgagcgtgcagggcctgaggatggagaacagcccgcagttccacctcaagttcgacgggtgcagccgggtgctggtcgacggcctcgtcgtcagctcgccggcgtcgagcccgaacaccgacggcgtccacgtcgagaacacgagctccgtccggatcctcaactccaggatcagcaacggcgacgactgcgtcagcatcggcggcggctgctcgggggtgcgcgtcgagaacgtcacgtgcgtgcacggccacggcatcagcatcggcggcctgggcgcgcgcggcgcgcgggcgtgcgtgtcgaacgtgaccgtgcgcggcgcgcgcgtcgtcgactccgacaacggcgtgcggatcaagacgtggcagggcggcgccgggtcggtgtcgggggtggtgttcgacgccgtccagatggtgaacgtcaggggctgcatcgtcatcgaccagtactactgcgatgcgcacggcggcgccggcgccggctgcgccaaccagaccgccgccgtgcgcgtcgacggcgtcgcgtacagggggatccgcggcacgtacaacccgcgcggcggcggcggcgcgccggtgcgcttcgcgtgcagcgacaccgtcgcctgcacgggcatcaccatgaccgacgtcgagctgctgccggccggcggcggcgacgaaggcggcggtgccagcgccggcgcgaagctggccgacccgtactgctggaacgcgtacggggtgatggagacgctgacgcagccgccggtgcactgcctgcaggaaggtcgcccagagtcgctgcaagatcagctcgcaagctgctgagcagtagcagacatgacatgcctcttcttttgacaatagatttcttctccgcgattcatgctaatctatagattttctttctcaacgattaactataactaacttttgagtcatccagactccagagttcc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0329300, RefSeq:Os01g0329300

Retrieved from "https://ngdc.cncb.ac.cn/ricewiki/index.php?title=Os01g0329300&oldid=25618"