Os01g0338600

From RiceWiki
Revision as of 04:38, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0338600| Description = Conserved hypothetical protein| Version = NM_001049479.1 GI:115436371 GeneID:4326799| Length = 4504 bp| Definition ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os01g0338600

Description

Conserved hypothetical protein

Version

NM_001049479.1 GI:115436371 GeneID:4326799

Length

4504 bp

Definition

Oryza sativa Japonica Group Os01g0338600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:13461954..13466457

Sequence Coding Region

13462238..13462373,13462862..13462920,13463764..13463913,13463999..13464115,13464315..13464509
,13466037..13466231

Expression

GEO Profiles:Os01g0338600

Genome Context

<gbrowseImage1> name=NC_008394:13461954..13466457 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:13461954..13466457 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggtggtggtgacggcggcggcgccgcctctcggcatagcgttggtggggccgacgcgggcgaggcgtggaggagggttgtcgctctcctcctcctcctgctgctacctgtccatgtgcggccgtggcgtcctgcgagggggatgcgcgaggatgagggagccgctgccgccggccccgattgggctggaccggtttctctgcggatacatgcgaagagatgggcatgaagatggtgaaaggagtcaaggaatagaggattctcttatgtttgggccagacgatgataatggttcaaatattcctactcaagttgagacacttgttaggggtactgcgacggttgctactccagagtataagtcgattccagatctagattacctgcaggagttgctggctattcagcaacagggaccgcgggctataggtttttttggtacccgtaacatggggtttatgcatcaacagcttattgagatcctgagctatgctatggtcataacgaaaaatcatatattcacatctggtgcttctgggactaatgcagctgttatccggggtgctttaagggctgaaaagccagagttgctcactgtaattttacctcaaagtctaaagaagcaacctcctgaaagtcaagagcttttatctaaagtacaaaacttaattgagaagcctcaatatgaccatttgccactaattgaagcgagcaggttatgcaacatggacatcatctcgaaggtccaacaggtgatttgttttgcattccatgacagcaagctgctgatggagacctgccaggaggccaagaatctccggaagatcgtaaccctattctacttggattag</cdnaseq>

Protein Sequence

<aaseq>MVVVTAAAPPLGIALVGPTRARRGGGLSLSSSSCCYLSMCGRGV LRGGCARMREPLPPAPIGLDRFLCGYMRRDGHEDGERSQGIEDSLMFGPDDDNGSNIP TQVETLVRGTATVATPEYKSIPDLDYLQELLAIQQQGPRAIGFFGTRNMGFMHQQLIE ILSYAMVITKNHIFTSGASGTNAAVIRGALRAEKPELLTVILPQSLKKQPPESQELLS KVQNLIEKPQYDHLPLIEASRLCNMDIISKVQQVICFAFHDSKLLMETCQEAKNLRKI VTLFYLD</aaseq>

Gene Sequence

<dnaseqindica>4085..4220#3538..3596#2545..2694#2343..2459#1949..2143#227..421#aggcttaggcctagccattcccatgaccaacgcccagccccagccgcagccgcgccaccaccaccagcctcgtcaattctgagggcgccgccaacaccaacaccaccaccatcgggtcctcctccccttgcggattggttgcctgaccctcctcctcctcctcctcctcgtgtagattgattggttcttggtggtggtggtggtggatcgggtggctttggctgagatggtggtggtgacggcggcggcgccgcctctcggcatagcgttggtggggccgacgcgggcgaggcgtggaggagggttgtcgctctcctcctcctcctgctgctacctgtccatgtgcggccgtggcgtcctgcgagggggatgcgcgaggatgagggagccgctgccgccggccccgattgggctggaccgggtacttgcttctcccactcgtattgctgtttcctttccatccttgttgcgacctgtgcttgcttcttcttcttcttcttcttcttcttcttgttatcgtcgggataggatcatggacttgtgtccgcgggggtttagatagtttatatatttctgaaattaccagaggcaaggcagtgttcgttttcccggttcttgtccttgctcgacgacaatttcctgatgccagtgagaaactaatcttgcacaatctagtgaaatgtcagtccaatatattcatctcaaaccgaaaaatatgggaggaaaaatggctattgtgggaattatggtcttgactgagcatctgttgtgacatcaaactgcaccccagtgatattctgcctcagttttacacaagttactaatatcctatagtccaagaagacactaaatcttaaggggggaaaataatgatagtgctaaatgaccatacatacctctattggatggcgtacaacgactgtgcagccacttaattgcattagtttaggggctgagaatggacaaattaaaataattatgcacttgatttcttcggtggcaaatttgaaacgatacatccagagagagtggacagacattgtgaaaccgaaggagcggtatgatggatgtgacatttactgaaaactgaagcttttttacattccacagtaatcatggtcttgttactgttctttgctaggatctagattctatgtaatggcgccactcatgactttccaccatgttcgctgtttcaagtggataatttcccacctcaatcgcaaacattggttcataattaaatggtgcgtaagcacttactgcagtcatttgaagaaatctttatggttgggatttttaccgtttgagtattatggtctggatatcagaacccacaatgcactagagtaaaagattctgcgtctaagtaatgtactctacatgaaaaaaagttctcattttgcactacttgccagatagagaatcaaagtgtggtatggtatgtctcaaaggctaacctagagtcactttactgttgatcttggccatttattcagaatccaatgcttgctaatctagcatacctttagggagcttgttggcttgaagattgagtccatgaaccatttagttttttgtttggggaatggaatgagttggtcagccatccctcaaaaaacacatccgtgtacataaatgatgaatgggatcatcttaccaaaatcatgggattatcccatgttggaccaactcatcctagtttggcttgattcctcaaaacaaacattccactagtatttttcttagttttcccacacatgtttcttctaaagcggcagggtgcatgctgtcattccagaacgacttgatgagtttggccaattttcacaattgggaaaaggtgcaacataaaaaaagttagattcattgatgctagaatgatgtaatataatcggttttcactaatgatttactgccaggggctgtttttattgtgctcgtatagtttctctgcggatacatgcgaagagatgggcatgaagatggtgaaaggagtcaaggaatagaggattctcttatgtttgggccagacgatgataatggttcaaatattcctactcaagttgagacacttgttaggggtactgcgacggttgctactccagagtataagtcgattccagatctagattacctgcaggtggctttctctttcctttttctattgtgtccattcaatttaacaaagtcagtttttgcctagtagtttctgtaaatatgtttggggccaacagatatcttccatgctgttcatcctcatccaatgaatgataaatagcataacatgtatgaaattatttatattatagaatgatcttattcacttagtggtaatgcaggagttgctggctattcagcaacagggaccgcgggctataggtttttttggtacccgtaacatggggtttatgcatcaacagcttattgagatcctgagctatgctatggtcataacggtatgtcacagagtcttatggtataatagttcttccaatatttgattcatgtactactctaattaatattatttgttggctgcagaaaaatcatatattcacatctggtgcttctgggactaatgcagctgttatccggggtgctttaagggctgaaaagccagagttgctcactgtaattttacctcaaagtctaaagaagcaacctcctgaaagtcaagagcttttatctaaagtaagatttcatgatattccagtcccgaattgatcatttcttacctgttccatttttatcaaaatcttttactagagagctctacatggaccagtttctcttctgtgattttgtattgctagatgctgctataggcacagaagtcccaacatttttggcaataagttatgggaaggatttattaagtgggaactccatgtcaaatgggagaaaatggactctgaatcctttgatcaacttgtggacgatttgtgtttatagaatctttattatggtcaaagtagatgattatcactaccacaccaattaaatagcttgcaattgtgactcatgaattcatgtgcttccattatcagcagagttttcaccagaacttagaaatgaggccccttggaacccagaaaagcatgcatttctttagtagtgttcctctattactaaaaggttgtttaatcaattatgctaaaattctgtcttgtcatctccagtcctctatccttttggtttgccataggttcggtcttacatcaggtattcatggtctttttgtattctttggatatttcctagctatctttatcaaacatgaacatcatttttttaaggatatgagttcagggtattatagatggtgtgagaatgaaatgtatcatgaattcttcatacaccatctaaagtatccgacagttcttagaagctgaccagaccttcaccgtaacttttattgaattccaacaatgtacctctgcagaaaacatcattgttttactttaccatgtaaagctaatcttttgtccatatggtaagctgaatatgaattggtgggattttgaaattttgtaggtacaaaacttaattgagaagcctcaatatgaccatttgccactaattgaagcgagcaggtatgtcagctaccttttcaagttatatttgtgatttttttacttctcattaaatttatgtcattaggtattgtcaatcatcataatgtagtgttttctgaaagcagttaaaaattgctgcagcttgcagcgactttgtgcttcggcagccgcagcggctgcagctgctatggctaccgaacaggggccattttatagacataggatatttgatacatggtcctctataagcctggcaatggattggcctcatcttttattttcatcagttgcttgctgtaatagagatcatgattttccttaactaattttattccagacaagtgcttaagatatgaaacatttgcttgtgccattacacaaatatatcatataccagttcggtaatccttaatccactggctcctgcataaacaaaacattctaatagctactggtgcaattagaattagcagctattggtgcttaatatgtatcacaatattcaggttatgcaacatggacatcatctcgaaggtccaacaggtgatttgttttgcattccatgacagcaagctgctgatggagacctgccaggaggccaagaatctccggaagatcgtaaccctattctacttggattagctcctcaggggcttcgcccccatttttgtctgtaggctggttggtgatagaatatttggttcagttagctgtgttcactctgaaactcaggaatgacacagccgaataggtgcaaccttcaaatcggggaagatcctttcgaccattgttttgaattttgtataaaccaaataagcttgtcgatatgtctggttcatcattgaatggaataatttaaagttcttactatttctgacctgtggcctggctactttttatttgagagggtttagctattattttgc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0338600, RefSeq:Os01g0338600