Os01g0343900

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Revision as of 04:38, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0343900| Description = Conserved hypothetical protein| Version = NM_001049496.2 GI:297596706 GeneID:4326491| Length = 4202 bp| Definition ...")
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Gene Name

Os01g0343900

Description

Conserved hypothetical protein

Version

NM_001049496.2 GI:297596706 GeneID:4326491

Length

4202 bp

Definition

Oryza sativa Japonica Group Os01g0343900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:13744215..13748416

Sequence Coding Region

13744215..13744406,13745042..13745293,13745405..13745439,13745495..13745746,13745863..13747128
,13748359..13748416

Expression

GEO Profiles:Os01g0343900

Genome Context

<gbrowseImage1> name=NC_008394:13744215..13748416 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:13744215..13748416 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggctgcttctaggatcagcatcagttcaacagcggcagaagcagcaagcagcagctatcatacaacagctgaagcattggctttgaggaaaaaaatgtccgagctcgcgaagaaaaatagatatccccatagattggggtcaagtggatacgctgggcacgtcgatcaatggcgggagaccgagcaaagatttgcagcggccggcaaaccactactggtagaccccatggtggaacgtagtaagaactgggtttgggcgcgcagcacaggtcaagtctcggatgagggagacatactattcgagactccggacatagaacaagtgactactaatttgcagcagatcgtcgagaaagaaagagcaggacagtttgtcccacggagggagcgagaccagcttactgtggcgttggggaccgccgaacactctggacgtgtaaggggtttgtcctcaaagccaagttggaagataggctttccacatgacgcaccaagttataagaagagagacaaatacaaagaacaactatcatacaaaatctatgcgcaagtgaaggaacacttctactcgttggtagctaaaaacccgacagcctttccaaggttattccctgatggccagcaacccacacaatccacacagcaaacaactaatgcacccagtagtgtaggatcagtggagacaactcccttccctatggatggtataactggaccaactccgtgcagtctcgtcgtacctatcggccgcgctagaaagactaaggaggttgcaactggtttagcgatacccggatgtcaattacacaacacggcaatccctgaggattacgcaagggtacaggtcgccaaggtccatagagaccacatttccttggaactagacatacctgcacctgagaggattgaacttctcggtgatgcagtgaatcagtttatgttgtggcaccgcagagacataatcctgaccgcggccgttccagcagcaggatcttcaactccatcctcatcacaagcaaggacagttgccgcttctgcttcaccgtcgcctcctggaccaccatcacctccaaatctggcatcaccactaccgtttaggtcaccgcctcgccaacctacaccaccaccgcttaggtcatcgcctcaccaacctacaccaccaccctcccattctcaacagcctgctctcccggctccacaaccagttcaagcctctcccacctccccagctcaacagcatgctcccccgactccgcccttagttcaagcatctccacctacaccccaatctgctctggtagaacaagtgcacataccggaagctttcaggaattctgagaagagaaaagaacttgctcacgtcatgtcagactcccagaagtcagtactagcagcccaagatgaattgcaatcatggttatctgccgatgtgcctgaaacttatgagtatggcaagccattcttgccaacatatcttatgaacaatctaccctgggaaatgagggcaatgcacgaatggtatatcaaggcatataggaagggtctcggtttcataagcatcgccgtcccggaagacctttacgccctctacaagctagataaaatggactatgcaattcatgaagctgatagaactggatcaccggttggatacatcgatccaacaagaatatgcaaaagacaacacaccgtagagctgagagaggactacgagcaaattggttggcaagacccctcaagaaaaggaagaatatgtgaagcaattgcacaacaggaagaagctagaagtagcaacatacttagcaatagcaatgttggcgcacgccgacaaagatgtcttaatggtcccctacgcgttgacatccccgaaatcccatatattgcacaacaaatcaacaacggtactacctggaacgtgggcgctgacctctgccgattcctccgtcgtgatgtctgcaacgcaagaggtctcttctacgacaacaagaatgaactcgcaatgaacgacaaatttaaacctctcagagagtgggagaaagaacatatgcaatga</cdnaseq>

Protein Sequence

<aaseq>MAASRISISSTAAEAASSSYHTTAEALALRKKMSELAKKNRYPH RLGSSGYAGHVDQWRETEQRFAAAGKPLLVDPMVERSKNWVWARSTGQVSDEGDILFE TPDIEQVTTNLQQIVEKERAGQFVPRRERDQLTVALGTAEHSGRVRGLSSKPSWKIGF PHDAPSYKKRDKYKEQLSYKIYAQVKEHFYSLVAKNPTAFPRLFPDGQQPTQSTQQTT NAPSSVGSVETTPFPMDGITGPTPCSLVVPIGRARKTKEVATGLAIPGCQLHNTAIPE DYARVQVAKVHRDHISLELDIPAPERIELLGDAVNQFMLWHRRDIILTAAVPAAGSST PSSSQARTVAASASPSPPGPPSPPNLASPLPFRSPPRQPTPPPLRSSPHQPTPPPSHS QQPALPAPQPVQASPTSPAQQHAPPTPPLVQASPPTPQSALVEQVHIPEAFRNSEKRK ELAHVMSDSQKSVLAAQDELQSWLSADVPETYEYGKPFLPTYLMNNLPWEMRAMHEWY IKAYRKGLGFISIAVPEDLYALYKLDKMDYAIHEADRTGSPVGYIDPTRICKRQHTVE LREDYEQIGWQDPSRKGRICEAIAQQEEARSSNILSNSNVGARRQRCLNGPLRVDIPE IPYIAQQINNGTTWNVGADLCRFLRRDVCNARGLFYDNKNELAMNDKFKPLREWEKEH MQ</aaseq>

Gene Sequence

<dnaseqindica>4011..4202#3124..3375#2978..3012#2671..2922#1289..2554#1..58#atggctgcttctaggatcagcatcagttcaacagcggcagaagcagcaagcagcagctgtagaccacacgggtggagaaagcgtttgtagtcccggttcgtaacccctttagtcccggtttccaaaccggcagtaccaatccgggactaaagatcgctatctttagtcccgggtgcaataaccgggattaaagatcgagctgacctttttttttttttcatggccctgttgctgcatggtttatatatatatatatatatatgaccaaaatatatatttacattaaagaaaatgtgtacacatgcatatagaaaaatagacatgtattaattacaatccattatgtcctagctagctacgatttcgacgtagtagtagtcgctatttcagaagctaaggacctatgaattgtatttctgtcgtagtagaattcacccttgggatcaaggatttgttcgttgatgaatcccatgagttattcttgaatcgccgcgataaattccttgtgtgtgatcaggttatccctcatgcgaataaactatatgaatgtatgaaattaattagtaattaaacaacaagtcgatatgtaatgaaattttgaatttatttgtacgtacatcgagctctcttgtggtgatgatttggtctgcaaggcagtggcaatactcgcacacgtagtagccgcacaagttagttccctgcttttgctttgcgcactataaataaatgacaaacggcgagagatgtaattaatatacaattgtatgtatttgaatcggagattcaatataaatgtagagcatgtgtactcacaggaaaattgaacttcggcctaagtctttctctccatttgccgcggaccaaatgacagaaccgataccaagccctacatggagtttaaagctatgattcgtagtagcaattaattataacaagattcttaattaacataggaacttatgacagtacctatctataagttcgaaaacattgtcaaacgtagactcttttttatccattgagtcatatacgttgacggtgcaggcctccaggttgaagagtaaaagcacccagtggaatttgcaatgtgcgtgggatgcattacatatgaaacacttagcatgttcgtacgggaataaaatttggtataggaagacagtaaaattaaactaactctgagttgtacggcaatagtatgaacgtccctccgttcatactcagaagaatctccctccgttcacggaatatggacatatatcgcagcctgactgggatacgtttgttgcagatcatacaacagctgaagcattggctttgaggaaaaaaatgtccgagctcgcgaagaaaaatagatatccccatagattggggtcaagtggatacgctgggcacgtcgatcaatggcgggagaccgagcaaagatttgcagcggccggcaaaccactactggtagaccccatggtggaacgtagtaagaactgggtttgggcgcgcagcacaggtcaagtctcggatgagggagacatactattcgagactccggacatagaacaagtgactactaatttgcagcagatcgtcgagaaagaaagagcaggacagtttgtcccacggagggagcgagaccagcttactgtggcgttggggaccgccgaacactctggacgtgtaaggggtttgtcctcaaagccaagttggaagataggctttccacatgacgcaccaagttataagaagagagacaaatacaaagaacaactatcatacaaaatctatgcgcaagtgaaggaacacttctactcgttggtagctaaaaacccgacagcctttccaaggttattccctgatggccagcaacccacacaatccacacagcaaacaactaatgcacccagtagtgtaggatcagtggagacaactcccttccctatggatggtataactggaccaactccgtgcagtctcgtcgtacctatcggccgcgctagaaagactaaggaggttgcaactggtttagcgatacccggatgtcaattacacaacacggcaatccctgaggattacgcaagggtacaggtcgccaaggtccatagagaccacatttccttggaactagacatacctgcacctgagaggattgaacttctcggtgatgcagtgaatcagtttatgttgtggcaccgcagagacataatcctgaccgcggccgttccagcagcaggatcttcaactccatcctcatcacaagcaaggacagttgccgcttctgcttcaccgtcgcctcctggaccaccatcacctccaaatctggcatcaccactaccgtttaggtcaccgcctcgccaacctacaccaccaccgcttaggtcatcgcctcaccaacctacaccaccaccctcccattctcaacagcctgctctcccggctccacaaccagttcaagcctctcccacctccccagctcaacagcatgctcccccgactccgcccttagttcaagcatctccacctacaccccaatctgctctggtagaacaagtgcacataccggaaggtactacatccgaaccgaagtctaatcctttggaacctcgtcgtataattccaaagttgatatcgacatatgacccaaaggagattgacaaggataaggagaagttcatgtttcagctttcaggaattctgagaagagaaaagaacttgctcacgtcatgtcagactcccagaagtcagtactagcagcccaagatgaattgcaatcatggttatctgccgatgtgcctgaaacttatgagtatggcaagccattcttgccaacatatcttatgaacaatctaccctgggaaatgagggcaatgcacgaatggtatatcaaggcatataggaagggtctcggtttcataagcatcgccgtcccggaaggtgctttcatgagttgagtggtcctaatgggatattttttttatctctttccgagacctttacgccctctacaagctagataaaatggacgttaatctcgttgcggcattctgtctgtaagtctgaactctttattacatgttacacgtatcattccaaacaaagaaaccaaatctcattacttctttgttcattatacagtatgcaattcatgaagctgatagaactggatcaccggttggatacatcgatccaacaagaatatgcaaaagacaacacaccgtagagctgagagaggactacgagcaaattggttggcaagacccctcaagaaaaggaagaatatgtgaagcaattgcacaacaggaagaagctagaagtagcaacatacttagcaatagcaatgttggcgcacgccgacaaagatgtcttaatggtcccctacgcgttgacgtaagctttatcttctttttgtttaattaatttatcttcttcggaattttctgtctccaataagcctatcttatatgcagagaccactacatattattccttgtatatccaaaaaaccaattgatcatatcgttggaccccacacaatatgaaaaggagacctttatggaattcctcactattttgaatttgtaagtgataaacatttcattaatataaattgtttaggtcgatccctagtcttcttgctactgataaaataattgttttcttcaaatagagcacacaagtactaccgcaaaagaggcggacccagtacatattccatcccagaagcagttacccatcatgactggctggccggtactatcaaatctataccaatagaactaattatcgaacaatacatactaatttatatctactgagatcagtccctcataattatatcgcagcgttacaaacaaccaccaggaaccaacttgtgcggttattacgtgtgcgcgatgctcagagtaaacgggaggtacaaaacaaccagtaaccaagtaagttagcgaactcttctctacaaagaaacccatctagcacacgcttctcactgagtaccattctattttcctttctgtgcgcagatccccgaaatcccatatattgcacaacaaatcaacaacggtactacctggaacgtgggcgctgacctctgccgattcctccgtcgtgatgtctgcaacgcaagaggtctcttctacgacaacaagaatgaactcgcaatgaacgacaaatttaaacctctcagagagtgggagaaagaacatatgcaatga</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0343900, RefSeq:Os01g0343900