Os01g0374900

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Revision as of 04:40, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0374900| Description = Zinc finger, RING-type domain containing protein| Version = NM_001049610.1 GI:115436633 GeneID:4325441| Length = 397...")
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Gene Name

Os01g0374900

Description

Zinc finger, RING-type domain containing protein

Version

NM_001049610.1 GI:115436633 GeneID:4325441

Length

3972 bp

Definition

Oryza sativa Japonica Group Os01g0374900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:15685345..15689316

Sequence Coding Region

15685389..15685684,15687440..15687935,15688851..15689000

Expression

GEO Profiles:Os01g0374900

Genome Context

<gbrowseImage1> name=NC_008394:15685345..15689316 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:15685345..15689316 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggcaacatcgcgagcagcggcggcgctagcccacgtccgccgccgccgcatctcgaagcctatagacacggggtgccgcccccgtactaccacagctaccctcgtccgccccccggcgccgccgcgccgccgccggtgccggtgcctgcgcacgtggagcggcacagggccgtggcggtcagcgtcggcgtcaacgtcaagggggacaccctgcggctggtgcccgacgacgacgacgacgatggccgcagcctactcctcgccttctccttcgacgccgatggccccggaagcataactgtctgcttctttgcacaagaagataagtgtgccttgaagaccgcaaaggaaaatttgcttcaacctgtgaccgtgccttttaaggaaggtcgaggtcaggagttcaagcaaccaagtgggtcgggaatcgatgtctctcgttttgaggaatctgagctaactaatgttggggaaggtggtgtattccctgtagcattcaaagtacaaatggatgtgtcaggcaaccaagaatcagaaggggcacatgagaccgaacaatcgaaatatcttgttaaatatgctatatttgtgaagaaagacaatgctgaatatggagttcatgttgtgcagcagatcctttgggtaaatggaatcagatatgtcttgcaggaaatatatggtattgggaacacagctgataagaatgctcatgaggatgattccgggaaagaatgtgtggtttgcctttctgaaccaagagatactgctgttcttccatgcaggcatatgtgcctgtgcagggagtgtgctcaagttttaaaatatcagaccaacaaatgcccaatatgcaggcaacctgttgagggccttcgcgagatagaggttgataacaaaccgattccccaacaaggatctcagcagttaacagcacctcaataa</cdnaseq>

Protein Sequence

<aaseq>MGNIASSGGASPRPPPPHLEAYRHGVPPPYYHSYPRPPPGAAAP PPVPVPAHVERHRAVAVSVGVNVKGDTLRLVPDDDDDDGRSLLLAFSFDADGPGSITV CFFAQEDKCALKTAKENLLQPVTVPFKEGRGQEFKQPSGSGIDVSRFEESELTNVGEG GVFPVAFKVQMDVSGNQESEGAHETEQSKYLVKYAIFVKKDNAEYGVHVVQQILWVNG IRYVLQEIYGIGNTADKNAHEDDSGKECVVCLSEPRDTAVLPCRHMCLCRECAQVLKY QTNKCPICRQPVEGLREIEVDNKPIPQQGSQQLTAPQ</aaseq>

Gene Sequence

<dnaseqindica>45..340#2096..2591#3507..3656#gacttccacccagacttccagactccagaggcgagggcttcccaatgggcaacatcgcgagcagcggcggcgctagcccacgtccgccgccgccgcatctcgaagcctatagacacggggtgccgcccccgtactaccacagctaccctcgtccgccccccggcgccgccgcgccgccgccggtgccggtgcctgcgcacgtggagcggcacagggccgtggcggtcagcgtcggcgtcaacgtcaagggggacaccctgcggctggtgcccgacgacgacgacgacgatggccgcagcctactcctcgccttctccttcgacgccgatggccccggaaggtcccgctccttcttctttttcccctctcacctatttataccgggctaagtgggtttcttgattagacgctgtggtaatttcgttgctatagctttgatttaggatctttagatcgtagtaacattggtatactacattactaaaatttctgccagagagctcagcacaaacaaatgttgttgcaatcgtgatgctttcgattgtgtactgctttcttcttctcttttttttttggggtacaaaattggcccatcttgtgtttggcataatgtcgtgattacctgtccaaatgtaagaatgcttcaatgtagaattcaattaaacttagtaccagatcagatgcatactgcttgattcttcttgctaaagcaaatgtttcttacttgaatatatatatactagaaatgtaaaataaaatcgttcacataacttggtattgagtgtgaaaaatgaagttgaagaaagtagcaagaatcaatctataattcttactaagaattagatttgtttaggtagtgacatgggactcaccgtactccagacttgtcagaatcagagcttgatttatcttaatgattttggatgtctactttcattttattgtcaccattgccatgttatagtaattgagattctccaaattcctgctactctcatttctattgtcaccattgccaaatcatattagttgagattctcctaattcctgtgacttctgttactaatcctacatggttcagtctcttctgatgtttaagctatttttacgccctcaaaatgttccatgcttaatagtattttatccttggcacatctttcatcttcccaacaaagattaagacatggtaagatagcactcgtgaagttgtggctgcagaactcataaagatccataccaattatgaaggtctatcataaaatgacttgtgtacttgaaaagagtatcgagttattcatttctactttcaactgatggaacaatgtgtgatctagagcatttaatatccgccaaaaaaaatcatggcttattggattcattctgcatatattgtctgtcctgatgtgcaagatatctaaacttaaggagtatgtggttatttgggcacgtattggtattctccacctaacccatgtattctgaaaggtttaaaagaaatctcctgttcactcttctggcagattgaatggaactaacaaacagaagatgagacattaggagttgtaaccaatccagtttgtgttgcgcatattgagtgtaactctgttttcaaaagttatgccttatgcagaccaggtcatactagatttacaatttgaaactgaactgatcacaacttcatatgtctcttgttccatgttttgtggaattccaatccatgataaacattgaaaggaaaccttctataccttgattaggatgatatcatccttaggtgtatttccaattgcagacttctccaatttggtagtattttatatatgtgcatcatttttttcagaatagcctttcttttttgcagaaagctcaaacttagatgctctttgatttattaatttattgtttgaaaatagagttgtactgtttccaaatttccaattttctgggaccttcacaattagtatggctatctccttgaacctttttaaagaattgaacgtttactggctttccttgttgtcatcacttcttttttttttttgtaagattgtcatgtgttatgtttaactaaaagacctattcatcatgcaaacagcataactgtctgcttctttgcacaagaagataagtgtgccttgaagaccgcaaaggaaaatttgcttcaacctgtgaccgtgccttttaaggaaggtcgaggtcaggagttcaagcaaccaagtgggtcgggaatcgatgtctctcgttttgaggaatctgagctaactaatgttggggaaggtggtgtattccctgtagcattcaaagtacaaatggatgtgtcaggcaaccaagaatcagaaggggcacatgagaccgaacaatcgaaatatcttgttaaatatgctatatttgtgaagaaagacaatgctgaatatggagttcatgttgtgcagcagatcctttgggtaaatggaatcagatatgtcttgcaggaaatatatggtattgggaacacagctgataagaatgctcatgaggatgattccgggaaagaatgtgtggtttgcctttctgaaccaagagatactgctgttcttccatgcaggcatatggtaagttactttcttactaagtattcttgaaagaatcacgattttgccataagacttatctgtttaagcatacatatattattatggagatagagttggaaaaaaaatagttatggattttctcctagcattctttcaacttatcagataattttgaagttgcattcttcgggcattttccatctttgatttgctttaaactggaagagaatatgaaaaggtttggattgtgtctactgctatatggtttggagtgtgccattggaggctggaagagggatagttgaaccgctaagataaaggagtaggatattcgtcaaatcccactttaataataaataaaggcagtcactgtccagcatattaaggaacctgcttagcgggcatagatatttagattaaaacccattttttctttcagtgagtatgccaactatcttgccattttctcttaacttctttcctagttttctatgccaaagttcatggcttatattaaacgtaagaaaaaaaattgctagtgctttactctcttccagaaagtgaaagacagacctttcttaaagcacatcaaaggtctgatatgcagtaacatccactgctccactattaggtattagcacttgcaacccccctggcactgtactgattattgaagcaatgacaataagtttatgtacttctgaatggctgtagcattttgtgcccaaatatttacccttctgttctttttctcagcagctatgcatttgtgctatttcattttttatgccatggtaagaacttcgtgaatagattgcaccatgttaagtagctagggatgatgatagagaaataacgattatatcctttaattttgctgatcagttcagttttatgaaaatcaattaaagatagcatgtgccatttttgcagtgcctgtgcagggagtgtgctcaagttttaaaatatcagaccaacaaatgcccaatatgcaggcaacctgttgagggccttcgcgagatagaggttgataacaaaccgattccccaacaaggatctcagcagttaacagcacctcaataaagtctcatctgattgcaagcaaactacctgtacatgtgtcatgtgtatataaaaggtctgtgctttcgggaaggggaaatcggaagttacctggtagcaacaaagctgtttctgatattttgttaaaggatgaacctactgggatttaattgtctacgtttggaccaccaaactcgacttattacttggaaaagacactattttagattgtatggttcaagccttttgcaggggacaatcgttttcttgttctaatttagttactcatccatcactttgatgtgtttaagagcatacgatgtgttctttctagtgg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0374900, RefSeq:Os01g0374900