Os01g0383900

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Revision as of 04:41, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0383900| Description = Peptidase S59, nucleoporin family protein| Version = NM_001049631.1 GI:115436675 GeneID:4325429| Length = 5709 bp| ...")
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Gene Name

Os01g0383900

Description

Peptidase S59, nucleoporin family protein

Version

NM_001049631.1 GI:115436675 GeneID:4325429

Length

5709 bp

Definition

Oryza sativa Japonica Group Os01g0383900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:16293606..16299314

Sequence Coding Region

16294508..16294688,16295894..16296046,16296588..16297111,16297189..16297311,16297498..16297611
,16297833..16297995,16298547..16299142

Expression

GEO Profiles:Os01g0383900

Genome Context

<gbrowseImage1> name=NC_008394:16293606..16299314 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:16293606..16299314 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgatgagctcttcttcgtcctggtctaccccaagctttgggttagccagggaatcctcttcattgttgtttacacctggccttgtgcaacacatgggtcctaatccatcgtcatcttggtccacccctgctcatccagtctctgatagtcccacgttttctttccccacgccatttttctgtgagcctgcgaaaggcagcagggtctatgcttataccaagactgctgatgatcttcctcataagcatacactatcaatttctgcaatgccagcatacataagcaaatcccatgaggagcttcgacatgaagattatcagagaggagacaaaggcggtgatggcctgcagaaaattatggttaattcagctcctgtacctcccatgcccatgttatcatctgttggagctccagttaatatgatcaattcaagtcaacctgctttcagtttgaagtccaaaacaaatttcagtactccattttcaccagcagcaactgctgatcaacaatctgcacagctacagttctcaacacaaaatcactattatacttccaacccattttggcctgccccaataggattggtgcgaccatgttcatcaacaggactgcaatcttccacgccaggtctaaactgtaccggcatcacatcatttccattcctgcccacaaagcaaccgtctgtgggaacccaatcatcaactttatttcctaccacttttgtgcatccatccgtggagttgcaaaagaatgcctccacccactgtgctagctcacagactgctccttgtacgacacacggaggaattctattcggcacggctgcaaatacagtctcattaactacatcatctactgagccaaccacatcatcccttggtccaacctcatgccctgctactcgacatggagatgcaccttctactggatttgcatgtcaggaaaatgtattcagcaactcagcggcatatacatctactataaatgcggatgttcccacgaataccatagatttgctacttccaaataacatccggctggtaaggcttagattttcttcaacaaatgatggtaatggaagtgttgcttcagaggttcattgtcatcatgatgctaaaacttcagaaacacccatttctttgtgcatatatcctggagagaaccaagagctgattatcaaatcaatggtgcagcctgctaagagtcacactgggaaacaatctagtccaactggtggtcatccagatgatcaaagtggtcgcagcaaagtatgcaacagtgctgctggtctgccatcgtcaggacctggtgagaatcagaaggggaatagcagtgctggtcacaagacaccaaagtctccactggctgctcctcgttgcgaagcgatagcggagtctgtactgcctcgcctgtacagcgccgattactacaccgtgccatctattgtggagctcgccgtgggagagagggacgagccaggctattgctcacatgtgaagggcttcacggtcggcaggcatggctatggcagcgtaaagtttgatggagaaactgattggagaaggcttgatattggatccatcgtggagttcaatgagcgtgagattattgtgtacagagatgtgagcaatacgccgcctgttgggcaggaactcaacaagcctgctgaagtcactcttctgaatgtcaagtgcgtcgaacagaagaatgggttgcagttcacagaggggccggcagttgataggtacaaggagattttggtgcagtggacaaaggaccatggcgcagaatttgtgtcatttgacgcggccaagggagaatggaagttcagggttaagaatttcaatatgtag</cdnaseq>

Protein Sequence

<aaseq>MMSSSSSWSTPSFGLARESSSLLFTPGLVQHMGPNPSSSWSTPA HPVSDSPTFSFPTPFFCEPAKGSRVYAYTKTADDLPHKHTLSISAMPAYISKSHEELR HEDYQRGDKGGDGLQKIMVNSAPVPPMPMLSSVGAPVNMINSSQPAFSLKSKTNFSTP FSPAATADQQSAQLQFSTQNHYYTSNPFWPAPIGLVRPCSSTGLQSSTPGLNCTGITS FPFLPTKQPSVGTQSSTLFPTTFVHPSVELQKNASTHCASSQTAPCTTHGGILFGTAA NTVSLTTSSTEPTTSSLGPTSCPATRHGDAPSTGFACQENVFSNSAAYTSTINADVPT NTIDLLLPNNIRLVRLRFSSTNDGNGSVASEVHCHHDAKTSETPISLCIYPGENQELI IKSMVQPAKSHTGKQSSPTGGHPDDQSGRSKVCNSAAGLPSSGPGENQKGNSSAGHKT PKSPLAAPRCEAIAESVLPRLYSADYYTVPSIVELAVGERDEPGYCSHVKGFTVGRHG YGSVKFDGETDWRRLDIGSIVEFNEREIIVYRDVSNTPPVGQELNKPAEVTLLNVKCV EQKNGLQFTEGPAVDRYKEILVQWTKDHGAEFVSFDAAKGEWKFRVKNFNM</aaseq>

Gene Sequence

<dnaseqindica>903..1083#2289..2441#2983..3506#3584..3706#3893..4006#4228..4390#4942..5537#aaaagaaaaaaaaagagaagaaaaccaagaaaggcgagagatacgcggagagcagccaactcctcgccttcgccttcggcttcggctcggcgccgcccctcccctctcggttagctgctgctcctgcacctgctgctgctgctactgccaatctgccattctcccccattcgacctctcccccgtttcctccgatcgactcgcttgcgcgcgggggaggtgtgatcgatcggttctctctcaccgcattgtgatcgatcgtctaggtcgtacgggcgctcgatctgcttcgaatcctccatttggttcgtagtttttattccccttgatggcccggacgacgcatggtttggaatttttctgctctaggctgggtttagtgtgggggtttggggtttttgttttttggttggggggatagcgtgttcgttaggtatttgcgctgctctgctcgttcggtcggtaaacgatttcaacggggtgatgcttcggtgtgttagttcacgaagttgaagcgttcgggttgtcggttctactaaattaatttattttcgcaatgaggctgaacaaacgcttcagtttctttaaataatgttatgttttgttcggatggggattttcttgttggaatactttagtttataatccttatgttggaaataaagaacctgcataatcaatatctgaagttaccacgttgctgaaatgtagcacctatcaagtggatttactactgtctactgtactagatatgtacccttttttttctaaaaaaaaaatctcgttgctaccaatgtcttgtgaaattgataaattgattacagtttagtggttcttaagaaatagggattgatttatcaattgtcattcctctaatttgatttaatgttgatttctgcagctatgatgagctcttcttcgtcctggtctaccccaagctttgggttagccagggaatcctcttcattgttgtttacacctggccttgtgcaacacatgggtcctaatccatcgtcatcttggtccacccctgctcatccagtctctgatagtcccacgttttctttccccacgccatttttctgtaagcaaccttttctttcatctttctgttctccctttctttttgtgctctttcatacctgccaactttataaaaaattaacaacatgataggtgcaagttcttacctacaaacagctcattttcctgtttatgcgtgtttgtgcttgtgaattcctgttcttctctatagtacaaatttctattatgtgttctaatgcttcaagatatcatcaagtagtttttttggtttggttatagtatctgtgttgcacatcaatctataagtccaattaatgtaggaaagcctcgtaatcactacagttttgagcttcttggtacatattttttttagtttgtctggtcacatactatatttttattaatcagaacgaattgatgcttcatatttctaatgtagtcgtccaatagtttttgttgatgaatgtcctgtggtaatacatcttgaatgctcaaaaactggctggttttttctaattgggccaggctcaaaaacatcttgatgcaaacaatttgctgaaccccagaataaaccaccgcagtattatattgtattaggcacctattgtcttcccaaacatccatagtgaatgttcaaaattgtagttaactgttatcttactcaccttggagaacctctgagctagtagtactgatgccaatggtggatgatgccaccctgattaccaatatttgatatgcagtggttgctcctgtttagagtaccttatgtatgtctatctttgatgtttatccttggtcgcacagacccttgtttagcttgggttgaaagtgctaatacactggaaggatttcacctactttatgtctctgagcatttgtttttaagattgtgaggaagatgcacatgcacatacctgtctgagtgtcccccttagcacatacttgaacttatggaggttagggatgaatctgtctacctcacaaaaaatgtattgaagcgcgcaagtgtgcacatgaatgcattcactaggatttgaaccatggtaggtgagtcatacaccttctccacctctgtgattggttaattgattgtaaggcaattttgatactaatctattttttcatggtggcatggcttaaaatttgacatgttccatttttttcactttgtaattttcttctcccatttcacttcatctagttcacttcatttttttgtatttttccatcgtaattatataggtgagcctgcgaaaggcagcagggtctatgcttataccaagactgctgatgatcttcctcataagcatacactatcaatttctgcaatgccagcatacataagcaaatcccatgaggagcttcgacatgaagattatcagagaggagacaaaggtataagtgtttgaagcatttttctgaactttagacttgtctatgaaatttgatgagttagaatttggataatgcgatctttaaagaaagcagtgacatgtcactacattttggagtaaactctttctttgttcctagaatttgattgcatcccttgtttgcgcttgcatcctttattattagcctaatgttacaccaaaagacaaattacatagctatttcaattgttatctagagcatctttacaacttactatctgagttcacgcgtccaattctctctagttatttaatctgaagcatctttacaacttattagcaagaatagttaactatttgatatttttttctctagtatttgcatgtagcaaattaaacagctaatgtgagcaataagcctatagttctaataatttatgcttagagttagtattaatggatcatttcctgtgatgatttatgtttaatattttgttggcacatttgctatatgtttgttccttttctatgtattaatctaattttatttgttaactctctaggcggtgatggcctgcagaaaattatggttaattcagctcctgtacctcccatgcccatgttatcatctgttggagctccagttaatatgatcaattcaagtcaacctgctttcagtttgaagtccaaaacaaatttcagtactccattttcaccagcagcaactgctgatcaacaatctgcacagctacagttctcaacacaaaatcactattatacttccaacccattttggcctgccccaataggattggtgcgaccatgttcatcaacaggactgcaatcttccacgccaggtctaaactgtaccggcatcacatcatttccattcctgcccacaaagcaaccgtctgtgggaacccaatcatcaactttatttcctaccacttttgtgcatccatccgtggagttgcaaaagaatgcctccacccactgtgctagctcacagactgctccttgtacgacacacggaggaattctattcggcacggctgcaaatacagtctcattaactacatcatctactgtaagttccttaaatcatggcttgtttgtgaacaaaacaaattggctctaatcattgatatttgtgttggttgacaggagccaaccacatcatcccttggtccaacctcatgccctgctactcgacatggagatgcaccttctactggatttgcatgtcaggaaaatgtattcagcaactcagcggcatatacatctactgtaagtgttgctgttgactgtagtatttatttgcggtgcagtacaagaggaactactatgcatgattattttccgttatctttgtttctcagaggaggcataaatcaaaacttcttcccacctttcaaatccatcgctcgtttttccagactctgctttatatgagaaagataatcttctttgcagataaatgcggatgttcccacgaataccatagatttgctacttccaaataacatccggctggtaaggcttagattttcttcaacaaatgatggtaatggaagtgttgcttcagaggtacggaactgaatctccatagtaaagagttgctctgcacattattatgcatgagtctttcataaaatgatctcttggcccctgtggcttctaaaatcatgttggaagctttgatgctttacatccttggtctcattactatttagaatgaaatgactttgacctttatgtctattcattctgatggtcatataataacataaccatgtccctttttgtaggttcattgtcatcatgatgctaaaacttcagaaacacccatttctttgtgcatatatcctggagagaaccaagagctgattatcaaatcaatggtgcagcctgctaagagtcacactgggaaacaatctagtccaactggtggtcatccagatgatcaaagtggtaattagtgtttgcatttcattccttctgatatatgtttcagacaaacagtttctctactctgactcatatgtacagtatgaatacatcatttatttattttattactccctccatcccataatataaggcatagtcaaacttggcacggtcttcaaacctaatctttgacttatattttctcatatactataagatttattgcaacaaaattataaccatcttaaagtaaatttaaatgtcaatccaaagatattaattttaggaaataaaatttaatttatagtattataataattgttggtcaagtatttttaaagttgaatcttggactgcgtgcatgtcttatattatgggatagaggaagtagcaattaaggagcaaaaatatgatcactgaagtgtggtgtaatttaatgttagggatatctgttgtgagtagtgaaaaatacattatcatttctaaagatttatctaaagatattcctataaatgtaaaggtatctcagaactgaacacttatcatacaagttcgatttttggttacttcaggtcgcagcaaagtatgcaacagtgctgctggtctgccatcgtcaggacctggtgagaatcagaaggggaatagcagtgctggtcacaagacaccaaagtctccactggctgctcctcgttgcgaagcgatagcggagtctgtactgcctcgcctgtacagcgccgattactacaccgtgccatctattgtggagctcgccgtgggagagagggacgagccaggctattgctcacatgtgaagggcttcacggtcggcaggcatggctatggcagcgtaaagtttgatggagaaactgattggagaaggcttgatattggatccatcgtggagttcaatgagcgtgagattattgtgtacagagatgtgagcaatacgccgcctgttgggcaggaactcaacaagcctgctgaagtcactcttctgaatgtcaagtgcgtcgaacagaagaatgggttgcagttcacagaggggccggcagttgataggtacaaggagattttggtgcagtggacaaaggaccatggcgcagaatttgtgtcatttgacgcggccaagggagaatggaagttcagggttaagaatttcaatatgtagagtcctctgagaatctataattctcctatcagtaggctcctgtgtctggtagaagtaacaacatagtaatcctgtaaaaaatgtgttctttttgtagttcggtcacttggtacggatagctggatacttctggacgaaataactttagctataaaaactgcctttgttgcgt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0383900, RefSeq:Os01g0383900