Os01g0501700

From RiceWiki
Revision as of 04:41, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0501700| Description = Similar to TATC (CpTatC)| Version = NM_001049668.1 GI:115436775 GeneID:4324478| Length = 5170 bp| Definition = Oryz...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os01g0501700

Description

Similar to TATC (CpTatC)

Version

NM_001049668.1 GI:115436775 GeneID:4324478

Length

5170 bp

Definition

Oryza sativa Japonica Group Os01g0501700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:18998080..19003249

Sequence Coding Region

18998190..18998399,18999142..18999432,19000661..19000953,19002757..19003042

Expression

GEO Profiles:Os01g0501700

Genome Context

<gbrowseImage1> name=NC_008394:18998080..19003249 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:18998080..19003249 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggggagcgcgggggcgctgctctcgcactcgcctccggggctcggcggattccctcctcgccaccatcaccaccaccgtctctccgtcctccgttgcgtaccgctcctcccctccccggcgcccgagcccctcagctgtcgccacggccggcaccttcgctgcgccgccgtcgacgggggagccggccgggagacggagcgtccctcgccgcccgcacctcagagggaggagtcgccgtcgggcagcctcggcgcagccctcgaggacccatctcctcaacctgtccaaaatggatcttttggaggtatcacagaggatgaagaacagagtagcctgtacaattttctttatccgagcaaagagctacttcctgatgataaggagatgagtatatttgatcatctagaggaacttcgtgacaggatatttgtctcagtattggctgttggtgctgcgatacttggttgtttcgcttactccaaagatcttattagaattctagaagcaccagttagtgttcagggtgttcggtttctgcagctctctcctggagaatttttctttacaacattgaaggtctctggttattgtggccttctacttgggagtcctgttattctgtatgagataatagcatttgttcttccgggtttaacaagggatgaacgtaaattcctagggcccattgttctgggctcttctgtactattctaccttggcattttcttctcctacacggttcttgctcctgcagcattgaatttcttcgtgaactacgcagatggggcagtggaatcgttatggtcgattgatcagtattttgagtttgtgcttgtgcttttattcagcacaggattatcttttcaggtccctgttatccagctactgctggggcaagtcggtttggtttctagtgaccaaatgctttccatctggagatatgttgttgttggcgctgtagttgctgctgctgtgcttacaccgtcgacagatccgttgactcagatgctcttggctggtccgctgcttggcctgtacttgggtggtgcttggatggtcaagctaactggtcgataa</cdnaseq>

Protein Sequence

<aaseq>MGSAGALLSHSPPGLGGFPPRHHHHHRLSVLRCVPLLPSPAPEP LSCRHGRHLRCAAVDGGAGRETERPSPPAPQREESPSGSLGAALEDPSPQPVQNGSFG GITEDEEQSSLYNFLYPSKELLPDDKEMSIFDHLEELRDRIFVSVLAVGAAILGCFAY SKDLIRILEAPVSVQGVRFLQLSPGEFFFTTLKVSGYCGLLLGSPVILYEIIAFVLPG LTRDERKFLGPIVLGSSVLFYLGIFFSYTVLAPAALNFFVNYADGAVESLWSIDQYFE FVLVLLFSTGLSFQVPVIQLLLGQVGLVSSDQMLSIWRYVVVGAVVAAAVLTPSTDPL TQMLLAGPLLGLYLGGAWMVKLTGR</aaseq>

Gene Sequence

<dnaseqindica>4851..5060#3818..4108#2297..2589#208..493#tcgtgtggtcgtgactcgtgtgactcggtgcgtgagcataatccacacttccacagagagagcaagacgaggtgaagcggcgcaagcaacagtgcaacacgccaggcaacacggaagcgactagcgagcgagataattatcatcgtccactctatccgcctccagcttgccccgcctcggtcctcggaggtgtaggagcgaccgaccatggggagcgcgggggcgctgctctcgcactcgcctccggggctcggcggattccctcctcgccaccatcaccaccaccgtctctccgtcctccgttgcgtaccgctcctcccctccccggcgcccgagcccctcagctgtcgccacggccggcaccttcgctgcgccgccgtcgacgggggagccggccgggagacggagcgtccctcgccgcccgcacctcagagggaggagtcgccgtcgggcagcctcggcgcagccctcgaggacccatctcctcaacctggtgtgccccttatccttctccctttatgttgccgatggtacctcaagtactcactagcgagccgtttccttggctggaacaagtgttgcgattgaactgggaactggacagctgcttgctaaaaatcatgagaaaaaaaatgttacgaagggaatgaagaaacttagtagaacttcaggcatcctcctggtgtaaccatacgtgctacagatttaacaatcaacgcaatgaaactgtagattaggaatacagttttgcatagcaataccaactacagatttaacaagtcgcttaacatgcaatagttgctgaccgtgagctttcattgattcatttgagcttcatatatatgttcgtgaaatcttgttctgggtatattgagtactccctccgtttcacaatgtaagtcattctagcatttcccacattcattaacatcaatatgaatgtgggaaatgctagaatgacttacattatgaaacggaggaagtagctaaaaagcagggggctatcctcctttggcatatctgatactaatatctaattaccccacacccaaaagacagaaaatctttctagagtgcaaaaccccagctttgagtagctaaaaagcaggggcctatccgcctgcggcatatctgatactagtatctcattactccacacccaaaagacagaaaatctttctatagtgcaaacaaaaccccagctgataagcaatagagatgcatgtgatgctatatgcttggtcaggtcagtcataagacgtgaaggctatctacaactggtcttaactctgtagttatgctaaggaaatctgctctgaatatgtagttcgtacaacggtacaagtgggttccaaatctagtcgcttttgttcttaacccatctttatgatcacccattatagatgtcatttgtataatcacctgttagagttccaacattttataaaaccattgatgatctattatgcatttaattttgttttccttcacttgatagttactatttttgaaacagttatgctaaaattaagttgtcaccttatcattgtatcaggatttagtgaaccatattttgaatagcaatgctatatcagaagggccatttagtatgagaaaagctagatttttaggctctgcttcagcctttagtgttaaacaaactgagtggccatgtgctacaactgactcaaagaaatgttaccgtaagttgctaagcacgataaaacaaagtcagttaatgtgtaagcacatactttcaaaacttcaactcaaagtttgcataatatagtaacttaaacaatgaaatccatcatgcagacataattgtcatttagcataatatattttgcataatatagcataattgtcataatatccttaaatctggaagttaggtaaaaactttcatccaatccacaagccacaacagaagaacccctaagtcctatgtgtgtatgcttccaaacatccacagaagaatcagatgaaattcatcatcaacactagctgtgtcttttgtaggagtaaaggaaacaactggaagagttgaatggatgaaacttatacagttttagatttgttgtggctaaaatctttaggctcaattttctagaagtattaaagaaaaatctatgtcattgcattgtacttatcataactattttattcccattgtgtatttttctggtgataactgctacatttatattcattgtacaaaatgcccttaattagtattatacgttggtggagttcctttttagagtacttgacaactcaaatttaacttgtacagtccaaaatggatcttttggaggtatcacagaggatgaagaacagagtagcctgtacaattttctttatccgagcaaagagctacttcctgatgataaggagatgagtatatttgatcatctagaggaacttcgtgacaggatatttgtctcagtattggctgttggtgctgcgatacttggttgtttcgcttactccaaagatcttattagaattctagaagcaccagttagtgttcagggtgttcggtttctgcagctctctcctggagaatttttctttacaacattgaaggtaaaactcttaacaaattaacatgacatactctaaatgcaaattaactttgtaagttttgcatctccctatggaaccaaccttgatgcttgagtaaattttgcaaaactccaactactttgataaaactatcgcagaagtacatatttaagccacatcattacaaaactacaaatttaggacagtatcacaaaaataagtagatttggagttttatggtaagccatggtaaatctgtagttttgtggtattgtggcttaaatctgtaattttgtcatgtttttgtcaaaatatttgtagctgtgtgaagtttgctgtttcttattaaatgtttcaacaatgtgcactgcactttgaagttgatcctggtcctgcgtggtgcgtagcacatggactggttttagtctggggagtctatccgttgtaaaggcatttagtgcaagcatattgtcatgggcattaggccataaggccaaggcccataggcagcccataccagttaagttagagataagataagattaagtcttacttagagttcaagttataccatctatatgaggatgtgattgtgtctattatcgattaagcaatgaatatcaattagtctaatctctccctccccacaatgttcttctccctagcctaaatctacatcccttctccaggagccgacaccacccggctatccttccggcggtggttatctcgtcatggcctcgggtcgtgacacatatgaactgtactgtagctatcaaaatgactatcattaagattgaaaatatttaaatcctccctcacatggtcaggaagcttaaacacaagtcgacatgtgtgggactgtttttgcctcccaggcccccatataatcacaacacaaaactgcaagtagcttcatttgcctatgcctgttgaagctagctcaggaagtttctcacttctgagtgccatgggtagcaagattggtgcagaaggaaaggaggtgcaggtttatgactcgtgtttttattacgtgtacactaggctcacattcacaaaaccacacagtaatgcacactgcctcactcgtctataaactgctctagagaccactagagtatataatcatattcattataattttttaatcaatcttcttgtgtactagatgttaatgacgcttatatcctctcatgtggtcgttaagcaattcgactcttgctgacattgttatttcaatgatgtgcaggtctctggttattgtggccttctacttgggagtcctgttattctgtatgagataatagcatttgttcttccgggtttaacaagggatgaacgtaaattcctagggcccattgttctgggctcttctgtactattctaccttggcattttcttctcctacacggttcttgctcctgcagcattgaatttcttcgtgaactacgcagatggggcagtggaatcgttatggtcgattgatcagtattttgagtttgtgcttgtgcttttattcagcacaggattatcttttcaggtaaacacatggtcttataagttttcttttttaacacagtatcaaggttgattgttgtcatattgtcctctgtttccacatgttgttgtaattgtagcaaacatagtaggaaagccagttcatggtaaccattactttattgacgattgaactggttcggagggtactgcctcaccttctgcgaagatcgtcgtccagatttctcataatagaataatttaatgggtgactgcagatggttaatctccatctttaacctgagtctctaccttcttatcataaaaatatagagattaactcaatcaatcatagaataattatgtaatctgttgttcttgcgggtgcttttgttcaatccatggttgtagtgatagggcaaattcaaagcaactaggtaagtaaattctatggacaaggttacaggatatcttgatcttgcataatctactcggttgccaattggtgttggaacctgtatgcttgaacaaatcattatttgatctaactgtttcaatgctcattgacttgttatctggtgctaatataatcatcaattaaatggctggtgtggaaacttctctagatgttagtgatctgaattatcagtctgatttactgccgaagataaagaaagagaataattgtagcaggaccatctcattagaatgaatatatcccctctcaaagctgaatgaacataatatcttgtatatttttatagtttccatgctattttttccaggtccctgttatccagctactgctggggcaagtcggtttggtttctagtgaccaaatgctttccatctggagatatgttgttgttggcgctgtagttgctgctgctgtgcttacaccgtcgacagatccgttgactcagatgctcttggctggtccgctgcttggcctgtacttgggtggtgcttggatggtcaagctaactggtcgataattcctactagtattttgtattaattagcatcatagtcatggcggtggttctggacaaatcgcattccccattgtaacatagttcgtataaaattaactctttttttctct</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0501700, RefSeq:Os01g0501700