Os01g0510800

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Revision as of 04:42, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0510800| Description = TATA box binding protein associated factor (TAF) domain containing protein| Version = NM_001049703.1 GI:115436919 Gen...")
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Gene Name

Os01g0510800

Description

TATA box binding protein associated factor (TAF) domain containing protein

Version

NM_001049703.1 GI:115436919 GeneID:4324027

Length

7555 bp

Definition

Oryza sativa Japonica Group Os01g0510800, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:19617834..19625388

Sequence Coding Region

19618011..19618375,19618545..19618656,19618736..19618861,19618934..19619066,19620804..19620928
,19621049..19621144,19621219..19621356,19621429..19621535,19622053..19622161
,19622258..19622359,19623752..19623838,19624989..19625114

Expression

GEO Profiles:Os01g0510800

Genome Context

<gbrowseImage1> name=NC_008394:19617834..19625388 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:19617834..19625388 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgagcatagtgcccaaagagacgattgaggtgatcgggcagagcgtcggcatcgccaacctccccgccgatgtctccgccgcgctcgcccccgacgtggagtaccgcctccgcgagatcatgcaggaggccatcaagtgtatgcggcatgcaaagaggacagtcctgactgccgatgatgttgatagtgctctcagcctcaggaatgttgagcctgtatatggatttgcttccggtgaccccttgcggtttaagagagctgtgggacacaaggatctcttctatattgatgacagggaggtagacttcaaagagattattgaggcccctctacctaaagctcctcttgatacagcagttgtagctcactggctagccattgagggagtccagcctgcaattccagagaatcctcctgtagatgctatcgtagcaccaacagagaataaaaggacagagcatgggaaagatgatggacttcctgttgacatcaagcttcctgttaagcatgtgttatctagagaactccagatgtattttgataaaatagcagagcttacaatgagtagatctgaaacctcagtttttagagaagcattagtgagcttatcaagagactcaggccttcatccgttggttccttacttttcctacttcatcgccgatgaggttacccggagtttaggtgatcttcctgttttatttgctctcatgcgtgtagtccaaagcctcctacacaatccccacattcatattgaaccatatttgcatcagttgatgccgtcaattatcacctgcatggttgcgaaaaggcttgggcataggctttcagacaaccattgggagcttagagacttctctgctaatttggttggttcagtatgtcgaaggtttggtcatgcgtatcacaacatccaaacccgggtgacaaggacgttggtccagggatttcttgatcctcagaaatcattgacacaacactatggtgcgattcaagggatatctgcattggggcccagtgcaattaggcttctgcttttgcccaacctcgagacatacatgcagcttttagagccggaattacaacttgataagcagaaaaatgagatgaaaagaaaggaagcatggcgtgtttatggtgccctgctgtgtgctgcaggaaaatgcttatatgatcggctcaagttgtttcctaatttgctttctccatcaacacggcctcttttgaggagtaataagagagtcgtgactaacaacccaaataaacggaagtctagtacagatctctccacatcccagccacctctgaagaagatgacaacagatggtgcgatgaattctatgacttcagctcccatgccaggaaccatggatggcttctccacccaattacccaaccctagcatgacgcaaacttcatcctctgggcaattggtggaaagcaccgcatcaggtgtgattcggagggatcagggaagcaaccacacgcaaagagtttccacagtgctgaggctagcctggaaggaggaccaaaatgctgggcatctgttgagttcattgtacgaggtattcggtgaagccatcttctcctttgttcaaccaccagagatatcgttctttttgtag</cdnaseq>

Protein Sequence

<aaseq>MSIVPKETIEVIGQSVGIANLPADVSAALAPDVEYRLREIMQEA IKCMRHAKRTVLTADDVDSALSLRNVEPVYGFASGDPLRFKRAVGHKDLFYIDDREVD FKEIIEAPLPKAPLDTAVVAHWLAIEGVQPAIPENPPVDAIVAPTENKRTEHGKDDGL PVDIKLPVKHVLSRELQMYFDKIAELTMSRSETSVFREALVSLSRDSGLHPLVPYFSY FIADEVTRSLGDLPVLFALMRVVQSLLHNPHIHIEPYLHQLMPSIITCMVAKRLGHRL SDNHWELRDFSANLVGSVCRRFGHAYHNIQTRVTRTLVQGFLDPQKSLTQHYGAIQGI SALGPSAIRLLLLPNLETYMQLLEPELQLDKQKNEMKRKEAWRVYGALLCAAGKCLYD RLKLFPNLLSPSTRPLLRSNKRVVTNNPNKRKSSTDLSTSQPPLKKMTTDGAMNSMTS APMPGTMDGFSTQLPNPSMTQTSSSGQLVESTASGVIRRDQGSNHTQRVSTVLRLAWK EDQNAGHLLSSLYEVFGEAIFSFVQPPEISFFL</aaseq>

Gene Sequence

<dnaseqindica>7014..7378#6733..6844#6528..6653#6323..6455#4461..4585#4245..4340#4033..4170#3854..3960#3228..3336#3030..3131#1551..1637#275..400#gccacactcggtcaaatcctcttctcgtcggctccggcgtgcatgccagcggcggcggcggcggcgagaaacgctggcgaggaggcagcggcgagcgcttagatgctagcgaaccagcgaagagggcactgcagcagtggcggataggcggaggctagaagggagcagtacggccagagagctagggtttgggtaatttggcgagcgaggagcgaggggaggcgaagggagaagaggggggggggggggggggaggagaaagagcgggggagggatgagcatagtgcccaaagagacgattgaggtgatcgggcagagcgtcggcatcgccaacctccccgccgatgtctccgccgcgctcgcccccgacgtggagtaccgcctccgcgagatcatgcaggtccgtcccccccgcgctcccgaatctctcgcttcccttcggttttagtttcgtgcactttgggggactaggaggcaacttccaccattcccttcgtaggaaaattgcctgcccccccgaggcgtggatttgtagtttctgggtgatttgggaccgcagggagcaattgcttgctctttgttcttcgttctctcaattgattgctatgctcaaccattgtgctaagttgtgtggtggaatatttgcgatagacctattccaatgggttttgagtttgctggacgagatgcgtttccatcttgttgtttgaacatgctggttcacactgactgcttaactgtgtcctgctcaatatatgttcactgggtttttgtagcaatgcaatatattggacggtcttcatagcaatgcaatatattggacggtcttcatagcaatgcaatatattggacggaagatggttgttttttttgttcactattgtctcttcaaaagcattgaagcacaccattacagagtttctggactgttcaatcttctctcattcgattgcatgctatagcttactggtaacatatgttggggttttgttcctgttttatcaccattttttttaatttgtatatatttagtgaggtagtgagtctaagaatttgcgttctatccactatttacacgataaattcatcatttgaggttttctttactgaatcttggaaatatgttattcctatctgatctttactcataaattttggaaaactatcattgacaaactacagagttgtcacaaaaaatacaaatttaacactgcattaccagaaaaatacatatttgagccatatcacacaattatcgatttagcaccgattttatcatgaaactacaaattttacaggtttcatctatcgtgatgaacttttcataaattgtagttttctcataaagtccgtgctttatctgtagatctataatctcgttgcttaagttataaatttggtgttacatctgttgttttgcgataattttctggaagtatatgttgatctgcaaaatttgtatgtaagcatataaatattcagtcacagaaatgccattccattttctcctaggcactatatgtattttattatgctgtggattgtgacaggaggccatcaagtgtatgcggcatgcaaagaggacagtcctgactgccgatgatgttgatagtgctctcagcctcaggaatgttgaggtagtttctatttcgttgacaatattttttaggactactaaataaaggttttgtagatctagtaactgttgtatgcttgaatgcatcaaacttctgagttggatagctaaatagtcgagctcagtatttctcggaatcagctcattattaagctaaaagtataaatgtttaagaaacttagagttgacgatcttttcatggagacatgttagccataaataaggcaaactctatgcctgtatctgtttttggtatgtctgttccctgacatataaatgccattgcaatcatctcttgtttgaaaactgatactgcaattggtagaggcttttggtgtctgggtgtattcggtggtttcttcccctctcttcttctttaatacaaatatacaatccttctgttccatttgagaacacagctctcctgtgtgttcgagaaaacaaataatgtctttaaagcttgacatgtaattcctcaagggaacagctgaactgagcataggggagaaaccatatccttccattcagccccctatttctctgacacccactagttgtgaggttactgcagtccagtaggatgctgattttactttgcgtggaactgaatgagagaaagctgaataagtaggatgaagcccaatagtgtacgctgggtaagatgggggaaataatccatgtgaaaatacaaaataaaatatgagatatgtattcatgtcaaatggggtgtgctaagctaaatgcactttatgttagaatttgatgattatgttttttgtttcaaatcaaggactgagaactatgtattaaacattgccaatgtgtttatatgctgttgtatatgacttcgtatgtaaaagtttcctactttgcttacaagtaacataatgcccctttgccacgctcaatgttagaactgggaaaatgtgaaactgtttttcttttaatttcagattaagaactgagaagtatatattaaacattgccaatgtgtttatatgttttgtatgactccatatataggcgtttcctccttttttgagtaacataatgtcctttttggcactctcaatattatcactgggttggtttagcgtgctaggttggtttctttgatgttacttttgctacatattttcgttattttggttaaaatgttactgtagtggagtttaggtgggacatgattgccttcagtgtctaagacacaagctaaaaataatagcattgtattggatcataatctattaccacaaaaactgatgcatatgcagcaccgctggtaggaaatttgttgacattagtttttatggtggttctatgttatggtgaagttggcattaaaaagtattgtttcagtgcatttatttaattgctttgaattttcacacagcctgtatatggatttgcttccggtgaccccttgcggtttaagagagctgtgggacacaaggatctcttctatattgatgacagggaggtagacttcaaagaggtaggggctctactaatggatgaatcaaataacttttgtacttattttattatagggatcaatttgaaaattttcttattcattggctctgtgcagattattgaggcccctctacctaaagctcctcttgatacagcagttgtagctcactggctagccattgagggagtccagcctgcaattccagagaatcctcctgtagatggttagctcatatatcttatcttattttactctttaaaagagggagttggggggttatgctaggttctacacccacccccacgttgatcttttgtggctgtaaatatgtaggtatgtgttattcgtgagatttttatagaaaaatattgaatctttgaatatgagtatacgaggtggttagttggtgttcaattggaggatagttaattacctgttgcattttatattctagaactaacatttagttaggatatttggatccattccaacacaaataccttctagttatctgtatatggatttgcttccggtgaccccttgcggtttaagttatcttcacaaaacttacatcatattgttacctgctttatgtatacaatgttccttgggtgaggaagagattagttgtgggatctattaacagaccttagtgtgattaaatccgtgtttataatgttccttgcttgttcattatttgtagattttggtattatctgacaattagtgtttcacttcagctatcgtagcaccaacagagaataaaaggacagagcatgggaaagatgatggacttcctgttgacatcaagcttcctgttaagcatgtgttatctagagaactccaggtattgtggttactgtatattgttagagccttacataagatttatattcttctttactggtttcgtttgcagatgtattttgataaaatagcagagcttacaatgagtagatctgaaacctcagtttttagagaagcattagtgagcttatcaagagactcaggccttcatccgttggttccttacttttcctacttcatcgccgatgaggttgttatcttgctcttagagtctatattgtgcgagctggcattgccttacaatgtatatccttataatttcaggttacccggagtttaggtgatcttcctgttttatttgctctcatgcgtgtagtccaaagcctcctacacaatccccacattcatattgaaccatatgtaagtggttgatcagtcaactttgatgcttctactttctagttgttttgtttttagcattgcacacttatgtttgcagcatatttctgctaaagaaacaaaatttctcttgattgccagttgcatcagttgatgccgtcaattatcacctgcatggttgcgaaaaggcttgggcataggctttcagacaaccattgggagcttagagacttctctgctaatttggttggttcagtatgtcgaaggtgagtgaacacgaagagtaactactcaaatacctatgcatcgcaatgggcttcaaatagacatataataagtaataaaaaatatgaaaaaggcgtatatatttcgtgaattaatcttgttacaagccatacaagcgaatgatcaaatagtccacagaatatgaaaatatcccactaactcaggatgttaccactactaggttcaaaaatatatatcataaattttaaatttttagaagttttaaagctgcatgcacaaggatctacttgtagagaaactcaactggagaaggacgagaagaaagacttgagtagcttcttttatcagatagtaatatgtgctatctaacctcattctactcagatccaagaatgttatcagaatctaatctgttcttgatggttacagtttctagacataatctttagaatcatttccacaccattatcatagttcttcatttcttctattccctccattctcttatacatgacatttgttatttcatttttggatgaatggtgtacggactctctgcactgacttctggatgaatgggaagtcaatagtggtttgacctccatttcctactgtgtcagttatttatttctaggataagtccattttatccccctcaattcttgcctttgtaacacacccccaaacttccaataccatacaatttacccgcttggaaattcggggggggggggggggggggttgcaaaatacctggttttgaagttcagtggtgtgttttagacaaaggcaagtagaatggacttatccctttatttcttggcgagacaagaacaattaccatcagttatggaaccgtttcctcacttgcataattctactaataaatagaatgttaggtagtatttgttttatgttacattgatttttgcatttttctaggccatgtagactaaaagctccacgctttatctcgatgcatatatttagttggcggtgactttgtctcatgtgaagtccccttagagaaacgataggggagaaccccacttagaaatatagcatacagtagataataaagcacaaaaaatttcaagacccaacaagaacaaggtctacaagatcataaaagctaggaaactggacactggagagtgttaatacagatggaaactaataaccaaacatatttccatgtggggcaggaacttgcttgaggcttattccttacggatttactatgtgtgatagcacctcttcttagatttatgtttagttggaggagctttgtcacaattactaggggtgggcgttcggtttcctcggtttaattggatcgggtttttcgggttgcttggaattcggttttcgtaaaatgtaaaccgaaggaagttctagaaaaatatcaaccgagcaaaataaaccgaagaagatcggttcggttttttcggggttcagtttttaccgagaaagatctatgccacagaccgcggttgacttcacgcgagtacgcacggcctgcccagctttgcccgagggcgtgtgcttgatttggagagggaacaggatttgtggatctattagctgtcatgtatttgagtgcttatgttaacacacttctgttatgaagtccctgcgaatggttgaacattacttaagttgctctgtggctagaggttaattggtttctgctgcttgtgctgattgattgccttttgatgttgctttcattgaaatacaaacatttctttttgtaggtttggtcatgcgtatcacaacatccaaacccgggtgacaaggacgttggtccagggatttcttgatcctcagaaatcattgacacaacactatggtgcgattcaagggatatctgcattggggcccagtgcagtaagtcctgttcaagctaatctaattttatatttcagcaaaattttgctcacaatttttgttctttaccagattaggcttctgcttttgcccaacctcgagacatacatgcagcttttagagccggaattacaacttgataagcagaaaaatgagatgaaaagaaaggaagcatggcgtgtttatggtgccctgctggttagattacaagctttcaatgaatacatgttatctatttttatgcaccagcttcttacctgtggaatgtatttttcagtgtgctgcaggaaaatgcttatatgatcggctcaagttgtttcctaatttgctttctccatcaacacggcctcttttgaggagtaataagagagtcgtgactaacaacccaagtaagttggtacttctatataatatatgtgttgctacttgcttggcaacgcacaacaaataaaaatggttattttatcggctgaacaatttcttctcagatacataatactgcaaaatgttgaaattattaaggtgtgaaagtaaggctatggtcaattcaaatttcagataaacggaagtctagtacagatctctccacatcccagccacctctgaagaagatgacaacagatggtgcgatgaattctatgacttcagctcccatgccaggaaccatggatggcttctccacccaattacccaaccctagcatgacgcaaacttcatcctctgggcaattggtggaaagcaccgcatcaggtgtgattcggagggatcagggaagcaaccacacgcaaagagtttccacagtgctgaggctagcctggaaggaggaccaaaatgctgggcatctgttgagttcattgtacgaggtattcggtgaagccatcttctcctttgttcaaccaccagagatatcgttctttttgtaggaagcaaatgcatagtgttcagagctatgtaatatgcattgtaccattaggctggtcttgtggaattcttgaaactgaaattgacgtctaggaatcttgtagtgatctctgatgctagatttaatcgcttggtgacttgctgctgcaatattttatgtgctgatttcttgaagtttt</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0510800, RefSeq:Os01g0510800