Os01g0513900

From RiceWiki
Revision as of 04:42, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0513900| Description = Similar to Kinesin heavy chain (Fragment)| Version = NM_001049721.1 GI:115436997 GeneID:4323990| Length = 6906 bp| ...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os01g0513900

Description

Similar to Kinesin heavy chain (Fragment)

Version

NM_001049721.1 GI:115436997 GeneID:4323990

Length

6906 bp

Definition

Oryza sativa Japonica Group Os01g0513900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:19807783..19814688

Sequence Coding Region

19809131..19809377,19809532..19809621,19809707..19809807,19809909..19810022,19810116..19810197
,19810327..19810394,19810482..19810541,19810620..19810744,19811398..19811596
,19811677..19811808,19811887..19811979,19812095..19812979,19813074..19813399
,19813738..19814080

Expression

GEO Profiles:Os01g0513900

Genome Context

<gbrowseImage1> name=NC_008394:19807783..19814688 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:19807783..19814688 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggtgtatcaagacctccaagcacccctgcatcaaagattgagcgcacaccgatgtcgaccccaacccctggtggcagcactagggtcaaggaggagaagatttttgtcacagtgagggtgcgaccattgagcaagaaagaactggccttgaaggatcaggtggcatgggagtgcgatgataaccagacaattttgtacaagggccccccacaggatcgggctgcacccacctcttacactttcgacaaggtgtttggaccagcttcccagacagaagtggtgtatgaagagggagctaaggatgttgctatgtctgcattgacaggcattaatgccaccatttttgcctatggtcaaaccagcagtggtaagacattcaccatgagaggcgtcacagagagtgctgtaaatgatatatacaggcacatagaaaatactcctgagagggactttatcatcaagatatctgctatggaaatttacaatgagattgtgaaggatcttctacgacctgagtctaccaatcttcgcttgttagatgatcctgagaaaggaacaattgtagaaaaactggaagaagaaattgccaaggatagccaacatcttaggcatctaatcagtatttgtgaagaacaaagacaggttggggagactgcactaaatgacaccagttcacgttcccaccagatcattaggctgacagttgagagtaggctccgtgaagtgtcaggatgtgttaaatcttttgtggctaatctgaattttgttgatcttgctggaagtgaacgagctgcacaaacacatgcagttggcgcaagactgaaagaaggctgccatataaatcgcagcttactgactcttactactgtcatcagaaagctaagctcggataaaagaagtggacacataccctatcgagactcgaagttgacacgcattctccagctttctttgggtggaaatgcaagaacagccatcatctgtaccatgagtccagcgcaaacacatgtagaacaatctagaaatactctattctttgcaacctgtgccaaggaggttacgaataatgcaaaagttaatatggtggtatcagataagcaattggtgaagcacctacagatggaagttgctagactcgaagctgagctgagaacccctgatcgtgcctcctcttctgagatcattataatggaaagggacaggaagattagacagatggaaaaagaaatggaggaactcaagaagcaaagagacaatgcacagttgaaacttgaagaattacagaagaagatgggtgataatcagccaggatggaatccttttgactcaccacaaaggacacggaaatgcctcacatattctggatcactacagccaagtaacaaaatgaagatacggagctcgattagacaatcagccactgctccatttatgttaaagcatgaaattcgcaagcttgagcagctacaacagcagcttgaggttgaggctaaccgagctattgaagtactgcacaaagaagtcgaatgccataaacatggcaatcaagatgcagcagaaactattgctaaactacaggctgaaatcagggggatgcaatctgtcagatctgacagagatgttgacatgatcacagatgaaggaaatggatctgatttgaaagaagaaattagtagacttcatatgcaagacaatgatattgcaaaacttgaggctaaactagaaaatgtacagaggtctattgatagattggtgatgtcacttccaaatgttggcacacaatgtaacgagactacaccaaagtccaacagagcaaagaagaagaagaggatgcttcttccactgggcgtgagcaacataaacagaccaaatctgataagagcaccatgctctcccctctcttctagtaggcctttagagccagaagttgagaatagggctccagagggtgacactgtgtctcatgaaggttcagaaagggctactcctactaagagtgaagacactggagatgtatcatcgcgtgatgaaaccccacgctataggcgatccagctcagtgaacatgaaaaagatgcagaagatgttccaaaatgctgctgaggagaatgttagaaatatccgggcttatgtcactgaactgaaggagagagttgcaaaacttcaataccaaaagcagctgcttgtctgtcaggtcttggagttggaatcgaatgaaggcaagacaaatgacatggaagaagattcagaggaaaatgcaggatctctacaggatggtcctgattcatgggacagattatttaaggagcagatgcagcacattatccaactgtgggatctctgtcatgtatcaatcatacacaggacccagttctacttattattcaggggggatagggctgatcagatatatattgaagtcgaagttagaagactgacatggttgcaacagcattttgctgaggtgggcgatgcaagtcctgcagctggtgatgactccacaatttctttagcctcaagtatcaaggcattgaggaatgagcgagaattcctcgcgagaaggatgggctcaaggctgacagaagaagagcgagagcgcctcttcatcaaatggcaggtgcccctggaggcgaagcagcggaagctccagcttgtgaacaggctctggacagaccccaatgaccaagctcacattgatgagagcgccgatatagtggccaggctggttggtttctgtgagggtggtaacatcagcaaggagatgtttgagctcaattttgcagtccctgcaagtaggaagccatggctgatgggttggcagcccatttcaaacatgatcagggagaagacacaactttggtaa</cdnaseq>

Protein Sequence

<aaseq>MGVSRPPSTPASKIERTPMSTPTPGGSTRVKEEKIFVTVRVRPL SKKELALKDQVAWECDDNQTILYKGPPQDRAAPTSYTFDKVFGPASQTEVVYEEGAKD VAMSALTGINATIFAYGQTSSGKTFTMRGVTESAVNDIYRHIENTPERDFIIKISAME IYNEIVKDLLRPESTNLRLLDDPEKGTIVEKLEEEIAKDSQHLRHLISICEEQRQVGE TALNDTSSRSHQIIRLTVESRLREVSGCVKSFVANLNFVDLAGSERAAQTHAVGARLK EGCHINRSLLTLTTVIRKLSSDKRSGHIPYRDSKLTRILQLSLGGNARTAIICTMSPA QTHVEQSRNTLFFATCAKEVTNNAKVNMVVSDKQLVKHLQMEVARLEAELRTPDRASS SEIIIMERDRKIRQMEKEMEELKKQRDNAQLKLEELQKKMGDNQPGWNPFDSPQRTRK CLTYSGSLQPSNKMKIRSSIRQSATAPFMLKHEIRKLEQLQQQLEVEANRAIEVLHKE VECHKHGNQDAAETIAKLQAEIRGMQSVRSDRDVDMITDEGNGSDLKEEISRLHMQDN DIAKLEAKLENVQRSIDRLVMSLPNVGTQCNETTPKSNRAKKKKRMLLPLGVSNINRP NLIRAPCSPLSSSRPLEPEVENRAPEGDTVSHEGSERATPTKSEDTGDVSSRDETPRY RRSSSVNMKKMQKMFQNAAEENVRNIRAYVTELKERVAKLQYQKQLLVCQVLELESNE GKTNDMEEDSEENAGSLQDGPDSWDRLFKEQMQHIIQLWDLCHVSIIHRTQFYLLFRG DRADQIYIEVEVRRLTWLQQHFAEVGDASPAAGDDSTISLASSIKALRNEREFLARRM GSRLTEEERERLFIKWQVPLEAKQRKLQLVNRLWTDPNDQAHIDESADIVARLVGFCE GGNISKEMFELNFAVPASRKPWLMGWQPISNMIREKTQLW</aaseq>

Gene Sequence

<dnaseqindica>1349..1595#1750..1839#1925..2025#2127..2240#2334..2415#2545..2612#2700..2759#2838..2962#3616..3814#3895..4026#4105..4197#4313..5197#5292..5617#5956..6298#ggagagaattcaaactgtactacgtagtagtactagcgctagcactagcgagcggtggttgagcggcgcatcgcacgcgccgcccttgaccagcgacggcgagaagctcctccgcctccgcctcctcgtcgtcgggcgcgcgcccaccgccggcggcggctctcggcggcagcaggcagcggcagtggcctcgatcggcgggttgcgcggtcggatccccaatccccgggctgcgctggtgagtggttttcctcagctgcttctgcttgtccccgtgcgtctccctctcttccgagccccctggttctgctctgcctgcggccggcgccgttttcccgccgggcccgacggagtagccgagaggtggtgagtccgtaaggagggggggtgcagatgctggcggcggcggaaccggccgatctgccgctgtggcctcccgtgcgttcgcgcggcgcggcggatggagaacggaagttggtcgggtttgccgctcggaggttacagggcgggttcgtccatgaaaggaatgctgtttattttggcgctaactcgtggaattttttgtttgtgaactcagtttaccagattgcaatttccatacatgaatatacttgctagattttttttaagatcggtatctacttgctagattgagctttccaaatattaatacacttcgtctccctctcattttatttcttaccaattttgctttgcgtgtttttctcggcccatggccctaatctgaaattgtggggttttttttggaggtggggagaggggatccgaagtttttgaattcggtaccatttcgtaatttagattggggtgtatctgaatgtgacccgagcgatgcagataacacatttcttcttatgaagattacatcttattggcacagctttatgtatgaaattgagtaattttcgccccacgctataattttaggaaaaaacacccgcacatgtgcagatgtgcttgccttgtttagtgccgtccattcattcgtttttcattttaaaatttaacattaatggtggtaatagatctccttgtaatactactcataatggtgaagtaaaacatgcaatttactccgtttgtaataaatgaaatatttgtgtgttgactatgtaatttatttcctttgtaatagtgaaatagttgtgttggctaggtcagcacattgttgctgcagagctatcttcccggaattgtttgccaatattatgtgcaactgtgtgataaattgaatctgaccattttttgccttgtgccagcttcgtgagaaggctgggttcttgctgttttccccagacttcaaggaatctgcaatttactagcgaaaatgggtgtatcaagacctccaagcacccctgcatcaaagattgagcgcacaccgatgtcgaccccaacccctggtggcagcactagggtcaaggaggagaagatttttgtcacagtgagggtgcgaccattgagcaagaaagaactggccttgaaggatcaggtggcatgggagtgcgatgataaccagacaattttgtacaagggccccccacaggatcgggctgcacccacctcttacactttcggtaggcttttcagtgatctattcatgactgcatatctcaagcaattatgtttgtagtgacactcttgatcaatgacttcatatctcaatcctataagtttgaagttacctcagtagctaaattgactaatttaaattccatcttacccttccagacaaggtgtttggaccagcttcccagacagaagtggtgtatgaagagggagctaaggatgttgctatgtctgcattgacaggcattaatggtaaattaattctcactcagtagtttgaataaagttgaatgatcctttatctactctttattctttaccttcctttgttttgcagccaccatttttgcctatggtcaaaccagcagtggtaagacattcaccatgagaggcgtcacagagagtgctgtaaatgatatatacaggcacatagaaaatgtgagtttttttatacatggagcaacaaaatcatgctatctatattgctttctaaaatgcacataacacataattgtttcttgcttttgttgattgcatagactcctgagagggactttatcatcaagatatctgctatggaaatttacaatgagattgtgaaggatcttctacgacctgagtctaccaatcttcgcttgttagatgatcctgaggtttgtttccagttcgacagagtctatgcactgcccccacatattctcttgcatgccatgattatcctttaataaattgttatggtttgacagaaaggaacaattgtagaaaaactggaagaagaaattgccaaggatagccaacatcttaggcatctaatcagtatttgtgaaggtaactactatctgtatatattgtcttaacttattttttcaagaagaaccagaagaaatgggttgccttatttacttttttttttgttgacgcggtagcctattgcttatgatgtctttatgactgcagaacaaagacaggttggggagactgcactaaatgacaccagttcacgttcccaccagatcattaggctggtatatataaaaataagcctccatgtttatgttagatctttttcatgaaagtgagaaaaataattattgtgcattatctctatccagacagttgagagtaggctccgtgaagtgtcaggatgtgttaaatcttttgtggctaatctggtaagcataacgtcctcattttgcaatggtgtacatgctgtttttttaatctcaataatatgtgttgctttttcacagaattttgttgatcttgctggaagtgaacgagctgcacaaacacatgcagttggcgcaagactgaaagaaggctgccatataaatcgcagcttactgactcttactactgtcatcagaaagctaaggtatgattttctaaagaaagaaagaaaaaactctgggtctattatctcttatctgcaccaatcttgaaagtagtcgctgagttacctcgatgcactcatgggttagtctcagttctaatgttatctgttgatttgtaatgatatcagtatgttaatgatgtatcttatctcctaatgaatttctaaaacatgctaatgagattcatcagatcaaaatattcccaggccactttgtttaagtgggaggcaattgctctgtactctgtcctattgccactatactgtttaatcattctgcatatttagaactaaagtgagttttattaaaatctcatagctgcaacacagttaattgtaagttcttgaatgtgttggctaagtgacattggtatggcaggactaataagcagcattgtgtatttgcagtgtcatgaacatgttaaactagacaatttatttgcagtgtcatgaacacgttaaactagataatttatttgcagtgtcatgctaatacacagtttgagacctcttttctacttagataatttactgcatatttgtatttttaccgtttcttggtttgaacaggaaactataatgaagtatatctttattgggaatattagcagactgactctaaattttcaatgcagctcggataaaagaagtggacacataccctatcgagactcgaagttgacacgcattctccagctttctttgggtggaaatgcaagaacagccatcatctgtaccatgagtccagcgcaaacacatgtagaacaatctagaaatactctattctttgcaacctgtgccaaggaggttacgaataatgcaaaagttaatatggtaagatctgtgactgtgatgcatcatttatttacttatgagaatgcaaatcttcatcccttgggccttggtacgtacaggtggtatcagataagcaattggtgaagcacctacagatggaagttgctagactcgaagctgagctgagaacccctgatcgtgcctcctcttctgagatcattataatggaaagggacaggaagattagacaggtaatgtctatgctcaaggatgaagttcactggaatcatttccattttgtaactgacctaattaagtgaacactgcagatggaaaaagaaatggaggaactcaagaagcaaagagacaatgcacagttgaaacttgaagaattacagaagaagatgggtgataatcagccagtgagtatttgccctttccttgcaaatttacttttctttcaaaggatatcagccagtcagaaccacattcatttactgtcaacctaatctttccgaaacccatgttttcttttagggatggaatccttttgactcaccacaaaggacacggaaatgcctcacatattctggatcactacagccaagtaacaaaatgaagatacggagctcgattagacaatcagccactgctccatttatgttaaagcatgaaattcgcaagcttgagcagctacaacagcagcttgaggttgaggctaaccgagctattgaagtactgcacaaagaagtcgaatgccataaacatggcaatcaagatgcagcagaaactattgctaaactacaggctgaaatcagggggatgcaatctgtcagatctgacagagatgttgacatgatcacagatgaaggaaatggatctgatttgaaagaagaaattagtagacttcatatgcaagacaatgatattgcaaaacttgaggctaaactagaaaatgtacagaggtctattgatagattggtgatgtcacttccaaatgttggcacacaatgtaacgagactacaccaaagtccaacagagcaaagaagaagaagaggatgcttcttccactgggcgtgagcaacataaacagaccaaatctgataagagcaccatgctctcccctctcttctagtaggcctttagagccagaagttgagaatagggctccagagggtgacactgtgtctcatgaaggttcagaaagggctactcctactaagagtgaagacactggagatgtatcatcgcgtgatgaaaccccacgctataggcgatccagctcagtgaacatgaaaaagatgcagaagatgttccaaaatgctgctgaggagaatgttagaaatatccgggcttatgtcactgaactgaaggagagagttgcaaaacttcaataccaaaagcagctgcttgtctgtcaggttatgatcgtttatcttgcacacataagttttgttcatgcaaaggttactttgtttcaccactaaaatatgttttcttgtaatcttactacaggtcttggagttggaatcgaatgaaggcaagacaaatgacatggaagaagattcagaggaaaatgcaggatctctacaggatggtcctgattcatgggacagattatttaaggagcagatgcagcacattatccaactgtgggatctctgtcatgtatcaatcatacacaggacccagttctacttattattcaggggggatagggctgatcagatatatattgaagtcgaagttagaagactgacatggttgcaacagcattttgctgaggtgggcgatgcaagtcctgcagctggtgatgactccacaatttctttagcctcaaggtaaatattagcctttacttctttgagttttacgggctatgttagttaattccagaaaaagaaaatagtgttggaaggtctaaaaaagagtcatgtcccctaggcctttaaaatggatgttgctggaagcaaaaccttgtaatctgttttctcacagtagttttatcctctgtaaaagaacacttactgagaaaccttatatgttgatagtgaagatggagcttagttatctgatagaaaagccttaacatgaatgtttttccgagtcaaatgtttcattagtcataactgatatcgaatcgtgatatataaaccaattatctgatttcatgttgcagtatcaaggcattgaggaatgagcgagaattcctcgcgagaaggatgggctcaaggctgacagaagaagagcgagagcgcctcttcatcaaatggcaggtgcccctggaggcgaagcagcggaagctccagcttgtgaacaggctctggacagaccccaatgaccaagctcacattgatgagagcgccgatatagtggccaggctggttggtttctgtgagggtggtaacatcagcaaggagatgtttgagctcaattttgcagtccctgcaagtaggaagccatggctgatgggttggcagcccatttcaaacatgatcagggagaagacacaactttggtaagcagagatatgcccatcttccttgttaagatgaggtagaaggatcatataatctcataaaaattttggtgctctggaccaaaggtgaagtggctgagcttctgggttggtcaaggccaggattgacagggggtgaattgatgcaagcatggtgccaacatgcttcagtctgtgtagaatcttctcttgaacctgtattcttctttcatcaccagtgtagagagacttggatgttctcatattctttattaagtagtgttaagaaatgattccgttccaaattttgcccccaaattgatgatcaaaagttcgtcttgccatgtggttaaaggctgaatcatttaaagaatgcatagagatatttccactctttctcacaggaacacatggagttcaggaaccaggatctcgcggagttagaaaatattgtggttctcgctgtacaacgaggacctctccttttggcttgtgctatttgttccgctttctggattgttctagcgtctttctagttccagattcttctttcttggcgagtaacttctcgtcagacatcttccttttagttttgttagtcaacctcgtctgcatgagttatcagtgattttg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0513900, RefSeq:Os01g0513900