Os01g0518500

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Revision as of 04:42, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0518500| Description = Glycoside hydrolase, family 27 protein| Version = NM_001049738.1 GI:115437067 GeneID:4323975| Length = 7423 bp| Def...")
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Gene Name

Os01g0518500

Description

Glycoside hydrolase, family 27 protein

Version

NM_001049738.1 GI:115437067 GeneID:4323975

Length

7423 bp

Definition

Oryza sativa Japonica Group Os01g0518500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:20051086..20058508

Sequence Coding Region

20051340..20051557,20052622..20052672,20052756..20052837,20053243..20053402,20053474..20053727
,20053804..20053938,20054018..20054076,20054825..20054922,20055082..20055245
,20055321..20055382,20055538..20055712,20057066..20057323,20057429..20057576
,20058362..20058447

Expression

GEO Profiles:Os01g0518500

Genome Context

<gbrowseImage1> name=NC_008394:20051086..20058508 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:20051086..20058508 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggaaggggagccccatcctcccatccgccgccatggcgccgcctcctccgctacgccctcctctgcgccctcctccccccctggggcacttccgaggctaatgaacaacttgctgagtttccaccaagaggctggaattcctatgattccttttcatggatagttgatgaaaatacatacatgcaaaatgcggagatcttggcagaaaaattgctcccacatggatatgagtttgcagttattgattacctctggtaccgaaagtatgttcatggggcatacacagattcatatggatttgataacattgatgagtggggtcggccatttcctgatcttcaaagatttccatcatccagaattgataaagggttcagtcaacttgcgaacaaggtgcatggaatgggcttgaaattcggaatccatttaatgaaagggataagtttacaggctgtgaatggaaacacacccatattggacattaaaacgggaaaaccctacgtagaggatggccggcaatggacagctcgtgatataggtcttacacatagaacatgtgcatggatgccacatggatttatgagtgtaaatactgatattggagctggaaaggccttcctaagatctctttatcaacagtacgctgattggggtgttgattttgtgaaggttgattgtatcttcggtacggattacagcccaaaagaaatcataactatttcagagctcttggcagagcttgaccgccccatcatcctgtccatctcaccaggaaccgaagtgactccagcattagccaaaaacatcagtcaacatgttaacatgtacaggataacaggggatgattgggacaactggaaggatgttagttcacattttgacgtgtctagttcctttgctgctgcaaataaaattggggccataggattacgaggaagatcttggccagatttagacatgctcccatttggctggcttacaaatgcaggtgtcaatcagggtccacataggcaatgtgaacttacatctgatgaacagagaacacagatagcactttggtcaatggctaagtctcctctaatgtatggaggagatttgaggcatctcgacaatgacacgttaagcataataacaaatcctacattactgaaaataaatcactacagcataaataatatggagttccatcatgtgcacagtgaaaggacttccaaagaagacaagcattctagtcgtttcatatccgaagatcttgtacacgtaccaaagattgatggtgtatctcttggtctcactgcctgcagtgatgacaaagcaaatggatggtatatgttttcacaacatggtaaatcagatcatatatgcaggaactatgggatgcaggatgacaaaaatatctcattttgcctgggcaaaacaattcctctcctgacatcggatgatataatcgtacataatgaagaataccaaacaaagtttcacctggcaaatatggacagtgacgatgcttgtctggatgcatctggcagtcaacggaggacatcctcagatagcaagtttcccatgttttcaaggtgcaggtggcatgctatgcagatgtgggagctgaatgagaaaggaaacctcattagcagttactcaagattatgtgccacggtggaatccaacaataaaggagttgtaactacaggagcagtagcacgtgcatggatagcaactgggagtaaaggagaaatatacctggcgttcttcaaccttgactccatgagcaggaagataaccgcgagaatatcagacctggaaaaggttctcgggagtacattcataagaaaagacacgtgcagctgcactgaagtttggagcgggaggaatttcggtcgtgtggaggaagagatttcagcggtagttaaatcacatggttccatggtgtttgaaattacatgttga</cdnaseq>

Protein Sequence

<aaseq>MGRGAPSSHPPPWRRLLRYALLCALLPPWGTSEANEQLAEFPPR GWNSYDSFSWIVDENTYMQNAEILAEKLLPHGYEFAVIDYLWYRKYVHGAYTDSYGFD NIDEWGRPFPDLQRFPSSRIDKGFSQLANKVHGMGLKFGIHLMKGISLQAVNGNTPIL DIKTGKPYVEDGRQWTARDIGLTHRTCAWMPHGFMSVNTDIGAGKAFLRSLYQQYADW GVDFVKVDCIFGTDYSPKEIITISELLAELDRPIILSISPGTEVTPALAKNISQHVNM YRITGDDWDNWKDVSSHFDVSSSFAAANKIGAIGLRGRSWPDLDMLPFGWLTNAGVNQ GPHRQCELTSDEQRTQIALWSMAKSPLMYGGDLRHLDNDTLSIITNPTLLKINHYSIN NMEFHHVHSERTSKEDKHSSRFISEDLVHVPKIDGVSLGLTACSDDKANGWYMFSQHG KSDHICRNYGMQDDKNISFCLGKTIPLLTSDDIIVHNEEYQTKFHLANMDSDDACLDA SGSQRRTSSDSKFPMFSRCRWHAMQMWELNEKGNLISSYSRLCATVESNNKGVVTTGA VARAWIATGSKGEIYLAFFNLDSMSRKITARISDLEKVLGSTFIRKDTCSCTEVWSGR NFGRVEEEISAVVKSHGSMVFEITC</aaseq>

Gene Sequence

<dnaseqindica>6952..7169#5837..5887#5672..5753#5107..5266#4782..5035#4571..4705#4433..4491#3587..3684#3264..3427#3127..3188#2797..2971#1186..1443#933..1080#62..147#cgcactcacgagccgcggcttcactcaccactccccagtcgccacgcctcggcccgacgggatgggaaggggagccccatcctcccatccgccgccatggcgccgcctcctccgctacgccctcctctgcgccctcctccccccctggtcagtgcccggctctcccctcgcccgctcatctcgaatctccatgggcgccttgctgttcgctgttttatgggattagcccgtatgttggttagcggtttggagtggattcaacacgtttagtttcagctggttcccccggcgattatcattgattggttcagtttgctatgctcttgcgtgtggccatccagaggatcgagctgttgtaacagtaataaatgcttttgccaattcttgctgtgaggataggagttcatttggcagaggagtcattgtttcggataaataaatctggaagaaaatctcaaccccaattagaactttttttcttcgggcttttgacatgcttttcgaaccccaattaaaactttgtgaatcaacagcacaaacgccatcattgtttgtttattaaatactcttgcagtggagttacctatcaacggattgtaattggagatttggacatacttcttctgtttccatttttcatacagttgaagacaactagttggccgcacctatgatttatcaatgtgtgtgtgtgtgtgttttttttcctggaacatgtattttgtacccagtgcttccttgtccttgatgattagtttggttataggttcattacaaagtataattacacctgcgtacataaaatgtgcaaatgtgtgctctgacaaggggacaactccagcttgactgtcgctgttccatcctttgacaaccgagcccattcgaagcaaaagaaggaaaggcttacgtctactcatgcttttacatttcaggggcacttccgaggctaatgaacaacttgctgagtttccaccaagaggctggaattcctatgattccttttcatggatagttgatgaaaatacatacatgcaaaatgcggagatcttggcagaaaaattgctcccacatggatatgaggtaaccattcaaattgctggtcggtttcttatttgatagcaaaatgaatataaaaatataaactttatcatcattttaactattttgcatcatattggtgggtagtttgcagttattgattacctctggtaccgaaagtatgttcatggggcatacacagattcatatggatttgataacattgatgagtggggtcggccatttcctgatcttcaaagatttccatcatccagaattgataaagggttcagtcaacttgcgaacaaggtgcatggaatgggcttgaaattcggaatccatttaatgaaagggataagtttacaggctgtgaatggaaacacacccatattggacattaaaacggtaatgttttccttccttcaaatggagttggataacaactacagccactttggcagttatgcttttcctccactttttgagactgcctcaattttcttattgatcctttgttgaagttactaccatacctctgctctaaaatataagggattttggctatgcatttgtactgtcaaaatcctttatattttgggatggagataatatgttatataatgtacatacaacagtcaatctttaacctccaatgcaattttaagatcaaattataaaatagcataaacataacattatggcaaattttgctataggacatccaaattttgtgtaatttgctgatagacattgataaaacgtgtcacggctgaaagacatcctaaaaaactggtaatttgctagatgacacttttggctcaattggattgataaattattaagaaagacgagaatgaccctaagaccaaatgcttcaaacatgattttaaggggaagaaatagaaattatgcaactttaaatttgtcatcaccccaaatacatcactagtatagattatattccatcttggctccagtctcacctcaaaagcttttgaccctaagggcattcttgtctttttgaagaatttctctctccaattgagccgaaagtgtcctccagcagattaccagttttttagagtgtctttcagctgtgatacgtttttatgatgtctaccagcaatttacacaaattttgagtgtcatgtaggatttcaatgtcctgttgtagccatccagacaaacattttatcctttttttttcttgagagtgcaggagaactgtgcttcattccattaagacatattttatcattggaggaaattactatttttttccattatgtgttatgggcgtaaacaatgctatcctattattgatccatgttaacattatgttgtagaatgtctattcagcagccaatctttatcctccaatacgtttttaagatcatactgtaaaatagcttaaacatgtgtgttctggtagttatgggataaccattttggatttcaatgtcctgttgtagtcttccagacaaacatattatcattagtgaaaattactaatttgctccattatgcattatgggtgcaaataatgctatgctattatttgatgattcaaatatttggctgtttattttccctgcaaaatggaactcctcttcgctgtgaaaaaaaggaacttctctaaaattcttcaaattaattgcaagaaagggggttgaaatactacagcaagaaaatgaccagaaacataagtcattgaactgctgtttgttgttcaaagtgtgttctgttggcccttttcagggaaaaccctacgtagaggatggccggcaatggacagctcgtgatataggtcttacacatagaacatgtgcatggatgccacatggatttatgagtgtaaatactgatattggagctggaaaggccttcctaagatctctttatcaacagtacgctgattggggtgttgattttggtattcttatagcataattcttcagtttagttattacaactgtgaggactgtgtagaaagatcatatattaggcagtagatgatcattttcatgtcataccgaaactgaaatttattctgatggtttcatttgtaccattctgttctgttcacagtgaaggttgattgtatcttcggtacggattacagcccaaaagaaatcataactatttcagaggttagtagccccatatcctgttgatgtcctttcaaattattacactattcgaataagctaatttctaaattgcagctcttggcagagcttgaccgccccatcatcctgtccatctcaccaggaaccgaagtgactccagcattagccaaaaacatcagtcaacatgttaacatgtacaggataacaggggatgattgggacaactggaaggatgttagttcacattttgacgtgtctaggtaaattgagccaatatgctctgtctgcagtttctgactgcaagaattcaatccattaattaacctttaacttgctttttttctcattatctaaaaacgcttgattatttttctagtaaataaatcatttcttcttaccccattacatattgtacacagttcctttgctgctgcaaataaaattggggccataggattacgaggaagatcttggccagatttagacatgctcccatttggctggcttacaaatgcaggtaattatttgcagtttttctttagaaagtgtttgtcttgacatgcccctctaactgttcagcatagataaatcacttatatgaaaaaaatattagaatcataaatccctattgaatctgcattttaatactatggaacctggaacctaggtgtgtacatcaatatcttgcagaacgctgagtatcatctagtttatatttatgcatgggctatattgttacttttgtccgtaccaaataaattgatgccattacttcttttgttttagaggatttatgccattagatttttgttcagcagaataaaattaatttaaactcaaacataaatcttatccctaacttcataatactgcaactggatgacatatctcgattaaggacagatcaccgaacactgaagattaaaatacttgcttgagcaaaagattaactcaaccactccaattcaaaaccctccactacataccacaatttatccttagacgcatgtctcggcaacacaaaacaagggttttgctcattataggacttgaccgattatatataatattgaaatatcttaaccaatatcttcttggtttattgaaccattcacatgtaattgagccatatcaagatttttcttcaaatgttaggaaagtgctgcatatttattactaagtaactgctttgtaaaggaaagaatcttagattccttgaagcatatataattataacaggaataaacatttttgctctaatataggtgtcaatcagggtccacataggcaatgtgaacttacatctgatgaacagagaacacaggtttgcacttgtggaaatctatatctgatattcaatattctctatccactaaactctttttgttcacatgacctcgcagatagcactttggtcaatggctaagtctcctctaatgtatggaggagatttgaggcatctcgacaatgacacgttaagcataataacaaatcctacattactgaaaataaatcactacagcataaataatatggaggtaccctgtattttattcgtactgatagagcattttgtaggcgtaaatacaacactaagcttgtacaaatttccagttccatcatgtgcacagtgaaaggacttccaaagaagacaagcattctagtcgtttcatatccgaagatcttgtacacgtaccaaagattgatggtgtatctcttggtctcactgcctgcagtgatgacaaagcaaatggatggtatatgttttcacaacatggtaaatcagatcatatatgcaggaactatgggatgcaggatgacaaaaatatctcattttgcctgggcaaaacaattcctctcctgacatcgtaagcaccacccaatttataaatttggagtaacttaaacagtttttgtgattatattttctccatttcagggatgatataatcgtacataatgaagaataccaaacaaagtttcacctggcaaatatggacagtgacgatgcttgtctggatgcatctggcagtcaacggaggacatcctcagatagcaagtttcccatgttttcaaggtgcaggtggcatgctatgcaggtaaatgacaaaaaacattcctcatacagaatattagagttactgcaacctgaatttggatttgcatttgaaaattcctgctgtgtattttgattataaaatatttgtatttatactgtcctctatttaattgcttaatttcctcttggattctaagaagctcatgttacagaatcagagtgtcctatcaaacaaaatacatttcttgctgccaggtcaaatttgtaatgttcccttctatttttgataaaatagctaagcccatgtttgcttaatctctttgaacaacctatgtggcaaaatttcttctactgagttgtactgtagcaagttctagcaaaatggttacttttgctagttggagattgaattaatgccttcattactcatgaacaattactttagatgtgggagctgaatgagaaaggaaacctcattagcagttactcaagattatgtgccacggtggaatccaacaataaaggaggtacacactacaacattttatttagaaaattatggtgacttagtttcaacattattagataagcaacacaattctgtatgcagttgtaactacaggagcagtagcacgtgcatggatagcaactgggagtaaaggtagctgatctttcatctcttacatacgatcccggactgaattttgttttaacattgcgaggaataaaaaactgaatagtaatgataaacttgactgttcctgaaattcttatacttcctttaacaaggtctgtttggaaaatctgtgaaatcgttttttataatctattatgtggccccaaaacccttttttaatatttgaatggtttttgcttctgtactttgtgagaaaagtttactactagtatctaaacagaagttcccagtgatgtagtaaggaattattgcagtagaacctgtatttttgccggcagcagctgtgacagtgtattgacgcagtattgtgcataacctttcatccatgctgttaatgtgagatcatgttgctctcttttcatcaaagaaaggttttatataacaagagtttccctaatgaaaaacatggcattgatccacacatgctaaacagcaacaaacagatgaataagtcacccagttatttatttggttagcagtcagttgctcaagttatcttgattagacagtacaaatattcccttagataactggccatgacttgctttctgagctgtaataaactctttgaatagagtagtcaagcaagatgcaatttcaataattttttctattgtatcattagtgttacactgttacctcattcctatccacttctcataaatgcagatacatatatgttctagcggctcaaaagcataaaaagaactcaaaactaagcatgaatctgccaactgatggcttgactttcaaacacaaactactccactaagtccacaattatgatttaagatctattcgattcatttagcatttagcagttgtagagattttataaattgctgccacttttctgaatatgtcaccagacttcaaatgttaatctagacataatcgtttgcagtgagacatttgttttagtcctatttgtcatgcacattagctgcagcttctaagaggcgggctgtggcaatatatgtcacagattttttttttctgagggctaatgtctgtggtccattatataggagaaatatacctggcgttcttcaaccttgactccatgagcaggaagataaccgcgagaatatcagacctggaaaaggttctcgggagtacattcataagaaaagacacgtgcagctgcactgaagtttggagcgggaggaatttcggtcgtgtggaggaagagatttcagcggtagttaaatcacatggttccatggtgtttgaaattacatgttgaggtatcccataattctcctattgcgcttactgaagcatgacaggatggaatagataagtagggaaaagagccttgagcatgtatcaggtaaagctaccaaaatgaacatcctttaaaaggctggggtttcagtttaaaatctgggggttgtgggctttaaatgaggcctaaaagaacaaaaaaaattccggaatacggagctatatatgcaacaccactcactaatgaaggaaccaaatgcgaagttatgtaac</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0518500, RefSeq:Os01g0518500