Os01g0527700

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Revision as of 04:43, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0527700| Description = Protoheme IX farnesyltransferase family protein| Version = NM_001049765.1 GI:115437177 GeneID:4323939| Length = 7653...")
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Gene Name

Os01g0527700

Description

Protoheme IX farnesyltransferase family protein

Version

NM_001049765.1 GI:115437177 GeneID:4323939

Length

7653 bp

Definition

Oryza sativa Japonica Group Os01g0527700, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:20618198..20625850

Sequence Coding Region

20618411..20618802,20618874..20618977,20619093..20619218,20620230..20620363,20620492..20620629
,20621570..20621699,20625476..20625759

Expression

GEO Profiles:Os01g0527700

Genome Context

<gbrowseImage1> name=NC_008394:20618198..20625850 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:20618198..20625850 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtggaggggcggcgcgaccgccgcctccgccgcgagggctctccgctcgcgcctgatccccgacacgtcccaccacccggccacggctctagctcccatcgcatcgccgcgctcctcctcctcctcctcctcctcgtctgcccccaccatcgccgccgctgtgcccgccgtcgcggaggctacggcggccgcggccgctgtttcgaggcaagctggatccgtctccgacgcgctgaggcactacgggaggtgctacttcgagctctccaaagcccgcctaagtgcccttgttgtggcaacatctggggctggttatgtgctcggaagtggcaacatggtagacatagctggactttgttgcacctgcgctggtaccatgatggttgcagcatctgcaaatactctcaaccaggtgtttgagataaagaatgacgctaaaatgaaaagaaccatgcgacggcccctaccatcagggcgcattagtcctgcacatgctgccatgtgggctactagtgttggagttgctggaacagctttgttggcttggaaggctaatggcttggcggctgggctcgcagcttctaatcttattctgtatgcatttgtatacacaccattgaagcaaatacaccctgtaaatacatgggttggagcagttgttggtgccataccaccacttctagggtgggcagcagcttcgtctgaactgtcactgaatgctatgattctccctgctgcattgtactattggcaaataccacattttatggcccttgcatacttatgtcggaatgattaccttgctggagggtaccgaatgttttcttttgctgatcctactggtaaaagaactgcatgggtatcactcagaaattgtctatacatgctgcccttgggattttttgcatacaactggggtctcacatctgagtggttcagtcttgaagcatcacttctaactttgggccttacaattggagctctatcatttgtgctggagccaacccccaaaactgcaaggagaatgttctatggtagccttttgtatcttcctgcttttatggctggacttctgttgcatcggctgcctaatgagcaaaaggagcataatgtcactcagacgagtgaaatcaccggaattctttatggtgctgaacagcaggatgaagaacgagctagacagaagcgtgaggaccgaaaaccttctcgtattcactcgcgccctccggttgcctatgcttctgtggccccttttcctttcttaccagtacctatatatgtctctacccaaggtcatgagctatga</cdnaseq>

Protein Sequence

<aaseq>MWRGGATAASAARALRSRLIPDTSHHPATALAPIASPRSSSSSS SSSAPTIAAAVPAVAEATAAAAAVSRQAGSVSDALRHYGRCYFELSKARLSALVVATS GAGYVLGSGNMVDIAGLCCTCAGTMMVAASANTLNQVFEIKNDAKMKRTMRRPLPSGR ISPAHAAMWATSVGVAGTALLAWKANGLAAGLAASNLILYAFVYTPLKQIHPVNTWVG AVVGAIPPLLGWAAASSELSLNAMILPAALYYWQIPHFMALAYLCRNDYLAGGYRMFS FADPTGKRTAWVSLRNCLYMLPLGFFAYNWGLTSEWFSLEASLLTLGLTIGALSFVLE PTPKTARRMFYGSLLYLPAFMAGLLLHRLPNEQKEHNVTQTSEITGILYGAEQQDEER ARQKREDRKPSRIHSRPPVAYASVAPFPFLPVPIYVSTQGHEL</aaseq>

Gene Sequence

<dnaseqindica>7049..7440#6874..6977#6633..6758#5488..5621#5222..5359#4152..4281#92..375#atctccaaaagtccactcctcgccttcgtttctcctcccccatttcgtccctacctgctcctcaccagatccttccgccgccgccgccgccatgtggaggggcggcgcgaccgccgcctccgccgcgagggctctccgctcgcgcctgatccccgacacgtcccaccacccggccacggctctagctcccatcgcatcgccgcgctcctcctcctcctcctcctcctcgtctgcccccaccatcgccgccgctgtgcccgccgtcgcggaggctacggcggccgcggccgctgtttcgaggcaagctggatccgtctccgacgcgctgaggcactacgggaggtgctacttcgagctctccaaagcccgcctaaggtgtgcgcagtttgctccctctcccatgtttgtcgtagtaaatttagttcaagtggaaaaaaaaacacacgcacctttccagttgatgtttgtgcgtttcttgcaaatagctctgtcttgtcttcattttgttgtctaggtaaaatggaattacctcctttctttcatctttcatcaataaggttactttcaactcttataattgaattggagtattgggataaatgctatgtatatttagttcttatggttgtgttctaacttctaggatgctaaaaacttttttgcggtctttcattagagtagtcaaaccttagtatatgactatatgcactgaagttccgtttatcacaaaggagtaggagctcattactacttattgatatgtataccatgtaagaattaaggccatttcatttaaattggtatattaaaatgtgaatcctgaccccttgagggctgtgccaaatcgaccccttcttttattgtcctctgccaacatatggtgctccattaagcaaattagcttattgtaattcttctcaggggcgaagccaggaaaaatggtcaccggggtctactaactaatgatactaacagtagatctatagcttgcaatgacctaagactatgcataagatagaactaaattaacagtggcatattatgataaaataaagtctgttgctgtagtggttacctcttacatgttacaaatcttgtctacggctcctatcctccatcttgtgaaagccaacaaccacatcattatttagaattgaagctagcatttccggctcgacgaaacatatgatacgatcattcataaattgatcaccaatacgattccgtagaatttactccaccacaattctcattatcaccatggggggtatttttgttttcaagaatcaatccatcatagttttcatgcctatgaaatagttatagaacaagattgatcaggaacacaattacacaatatagacaacaaatgcataagcagccactcttagcaaaaccactaatttcttaccatccgttatgctgggaagaaaaagaattatgaatatatgattcaatcctcctcgttcacgaccatcaggcatcaggccatgtaacagaagtctgaataaattgaaaagtgcatatttcagaaccctaaattcctaagattaggtttcagagatgagaaaacaagaatttgggatagtccccgcagaaaaaaaaattgggatagggttacctacttacctgatcaaacggtagctcggctgctcgcactggccgtcgcggcgtcactgatcacctaatcctagttcttgacgtctttggtcttcaccgattcgcccgttcgccgcccgtccggccataccggcgtctcgcccgcccttgcctagatgtgtgactcgagaagacctgaagacgagaagtcgagactccgtaattaccaggaaggaatactagaatacgttatcaaaatagggaatttctggagactagtggagtagtgggcttctagcctcgtgggctcaaatccaagcgttttctcattatgtgggctgggctaacctagcttagatattaatttgtttgttgtgtcattactgctaatcacaagtgggcttcaactaattaattctactggggtctaatactttttttgaccggggtcagtgccggtaaaatagagggggtataacatgcttgttaaaaatcgtcggggtcagtagaccccgatgctttgctgtggcgtcgcccctgtttcttctgattatacgatagaactggattgaaaaggtattgtagaaaaaagaaggcaaaagtcatgtccgtatgtcaaggatgcaaaactaaatttcatgataaataagtgtgtcatttcaatgctagtattgtaaagatgcacaacaaaatttcatgattacaaacgtggcactagcacctaagcatttcagttttcttgtcattgtaagaatggtatgtttggcatttatatgagtcagcacttaatagaagaaatttgcatgttggcgccttcatatgttgacgtatgcgcttgtggtttgtctcttcgagaaaaagagtcacgtgtatgataaatcgtgttttttatcttcaccatttttttttgaactttaggacctctatctctatgtgctcaagtatgcatgaatttgccagaacatcacttgtgctggagatctgttttatgtctaatccctaatgagctttcatcaatgttttaaaacgcatccattatcaacttagaggttggttcaccttgatgatttatcagtgtaaatcattggtaaagttttgctgcttactgccctcgcagtgcttaaatgttctctatagtagtataagaaaatacccttggttcttgtttctgtttttggcttcatcgcattttgtctttcagatttctttcatgtcctcaatagaatttagtcaagttactcatgtcacaattgacaaatagctgtaaaatatatataggacccataacccaattataatggtatgatagtatttctttcgaaacaaacctacatgtatgatctttatgtatgcaacttaagtactctagaagatgctgatactcaaaattttagaagttttgatcatatgcttgttcaaaacaacaagtatttgtgaccagggggagaaaaatccaaagtaaagagacgtacaacagattaagcaactagcgtgaaagccttttttctggattgagtgctaagcaaccagacacttgtccatccattttcttgcttggaaaaaaaaagagagtcaatctgacttttattgtcattctggattgagtaaaagaaggggtgtatgatataaaggactagtcaaaaccatcatgatctctaactctctattatgtactaaactaatagagaataagaaactcctaacagttagatgcttttttttttaagataaaggaatatattattccagcctctgcataggccatgcactcaaccattcatcattacaaggatttccagttcaaaataaataatgctgtcaaaattgcatgttcataaaatttaagcttgaatgacaatgcattagcacaaagcctattagtaaacatccacccatgcttggaaatgtttccatcaccatagtctccaaaatacggcacactcacttcatctgctcccttggtaacttcttttgtagtaaggcccagaagcgagtccaatgtgtccccctgaagatcacctgcatataggatttcatttatgtcttgtccaaaacaatgccattcctcgatgaccacaacgcccaaagcataattgatgcttaattttcttgtaatctatactgcaatataaacattcatacttgtaattgccaaacagttttcaaggttgcataagcaataattctgtaaattgcaggcggtaggtggctaatctcttagcatgcaagagcttgctgtatcaggctcctatctaaacttcattatgccactttttagttgtgcacacgacttcttaatctccctagatgctgtcgaatttgttgttagaaactcagaacatgtaaatgggatcaatactgaattcaaatatttgagcaatacacattggttgtcaaaagtcttttgaattaggcttagccatctgccattatctcttaccgagaaaaactgtgatatactccgtctctttcttttgctagcattagaactgcttgtaagtggtcagttgtttctttgttttgatcatatattctattattatggtattcagtgcccttgttgtggcaacatctggggctggttatgtgctcggaagtggcaacatggtagacatagctggactttgttgcacctgcgctggtaccatgatggttgcagcatctgcaaatactctcaaccaggtatgtgcttgtttttcgaaagctttatccatcagtatgttgtactaaaccaatatttagagtgaattgcatagtaggccacctatttttaccttactttcactttagaccacccctaaagcaatattttcactttgaaggatcctttgtttttcctcttcctcatcttgacaatgcgtcaatctcagccgctgtcttgccaccgttgccaccgccttttggcgggtctctcttattcgctacttcccttcactctcgagtacttcgccatgcaaatctgtttggcaaagctatcaagaatccaagatgctcatgtgcagctgtgggttgatgcacgagctccagcatggtggcaagcacctgctctccatgaactccgcataatctgcaggaacagccaaacagagccaacgattcctttaaggttacatcaaccttctcgttgtgctggttcagtttttcacaggctcaccactgccgatcaattagcaagagctggcacacatcatctcctcaattcttcggtgtctgattttctctgcatgaacctgtttatcctttgcttctcactgactggtgggtcaccagtccaagctgcaactgtttggtaacaaaactggtgtaaagtgataagttttgtaaaacctagtgtaaactacaatacaggtaataaaactagcccaaactgaaatttactccaatattaattatatttatgcttgcacatcttttattcttcatttactcacattgtcataaaaagcgtcagacgttcatttcgttgtttccaaaatatttgcatcctatcaggatctgtagctattaagagtttaggatggacctcgttaattatagttgttttcgttcagagaaaatgaatgttctgtacttgctttaagcatctgtatctgaatacagtttgaaataactttgtttttaggtgtttgagataaagaatgacgctaaaatgaaaagaaccatgcgacggcccctaccatcagggcgcattagtcctgcacatgctgccatgtgggctactagtgttggagttgctggaacagctttgttggcttggaaggttcgtacaagatcttctctatttatctgcacatgttatgtgttgttttaaatgtgtttcgtttcagtagttggtatagtactgttattacatctgaacaccgtaaaattttggcaaggtttctgcaggctaatggcttggcggctgggctcgcagcttctaatcttattctgtatgcatttgtatacacaccattgaagcaaatacaccctgtaaatacatgggttggagcagttgttggtgccataccaccacttctagggtattcaacttgctgaaccattttgcgtttgcttaaatgcagtttgaagtagtaaattttctatggagggttatggtgtcatatgttctactttgcttcctagttttactgctgtgtaatgtcagaaaatagttcaacaaaagctctctccatttcttgaacgagtggcgaaattttgaacataagcaacaatggaatatatataccaaatagcctatttgcagttccacacaatgaaaatgcaaataacaagccattgttgttttttgatcctttgtatattgagattgatttgggatttcgtaacctggtggaacaccacccctgctatctgaactatatctaatactactttaaatggagttctgtaaactaccccttgaacttcttagtatgtataaaattaatcgtatctaaatggatagccatatctgaagtcatattaaggtgaatattccctatagcaaaatgataggtaacacatttcatggaaaaaatattttttatttatcgtaggtcatattgaaatatattttttatctgtaggaaagcacgagcattcagctagtttttatgatgtttggactaatggaggcctccaggggctaatgcactgggtatacagtgaatgccagagatgctctagatgtgttaattcatgtattctggctgaaatgtcatgattgcatcagatgtataactggaacagtcataactgttcaatgtgtatggactaatgcttttaaaaaaaacagaggcatattcggttcttctctgcatctatccttaatcagtgatttcttcacacttcatttagattttgttagttttctaaaaaccttttagtatttgtaacaaactagaacgcctgcacaaggtgtaaaatgtcaagcttagttcctgatggacttatcagtatgtgtcaatgtcctatctgttgaatgccaatgagggacctttttttccattgccacatgatctcagtccttaatttcatcttcttctgtacaggtgggcagcagcttcgtctgaactgtcactgaatgctatgattctccctgctgcattgtactattggcaaataccacattttatggcccttgcatacttatgtcggaatgattaccttgctggagggtaactctcctatctgaattgattattagcatactgactgtagaatttacatcagaatgattcaagtgcaaaacctgtatgtgacttgtagaattgtatgttctttgtgattcaggtaccgaatgttttcttttgctgatcctactggtaaaagaactgcatgggtatcactcagaaattgtctatacatgctgcccttgggattttttgcatacaactgtaagtactcttatatacttttgcctcccttatttttctgaaaaaaaatacttatgagacttgcattttagggggtctcacatctgagtggttcagtcttgaagcatcacttctaactttgggccttacaattggagctctatcatttgtgctggagccaacccccaaaactgcaaggagaatgttctatggtagccttttgtatcttcctgcttttatggctggacttctgttgcatcggctgcctaatgagcaaaaggagcataatgtcactcagacgagtgaaatcaccggaattctttatggtgctgaacagcaggatgaagaacgagctagacagaagcgtgaggaccgaaaaccttctcgtattcactcgcgccctccggttgcctatgcttctgtggccccttttcctttcttaccagtacctatatatgtctctacccaaggtcatgagctatgaaagatattacatggactaggcttgtggacgcaatgttggtccatatttttttggcttccaaaggaaattttcctgatcaagtactttgtccttgatgttgatatgattcgaaaataatgaacaagaaatttagctcttgggctcacctgactgtaaaaattgatgtccatttacatttgatgtcttgagtaacatgaatgcacatactttcag</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0527700, RefSeq:Os01g0527700