Os01g0533400

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Revision as of 04:43, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0533400| Description = Glycoside hydrolase, family 35 protein| Version = NM_001049787.1 GI:115437263 GeneID:4327808| Length = 6570 bp| Def...")
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Gene Name

Os01g0533400

Description

Glycoside hydrolase, family 35 protein

Version

NM_001049787.1 GI:115437263 GeneID:4327808

Length

6570 bp

Definition

Oryza sativa Japonica Group Os01g0533400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:20952414..20958983

Sequence Coding Region

20952688..20953287,20953762..20953869,20953966..20954079,20954199..20954308,20954455..20954543
,20954677..20954873,20954976..20955137,20955236..20955354,20955474..20955561
,20955646..20955751,20955892..20955980,20956086..20956238,20956366..20956458
,20956558..20956624,20956952..20957064,20957188..20957283,20958698..20958877

Expression

GEO Profiles:Os01g0533400

Genome Context

<gbrowseImage1> name=NC_008394:20952414..20958983 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:20952414..20958983 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgatgggacggcgcggcagcagctggtgccggtggtgggtggcgctgctggtcctcgccgtggcggccgatgccgtgggctgcaccagcgtcagctacgacgaccgcagcctcgtcatcgacggccagcgccggatcatcctctctggttccatccattatccccggagcactcccgagatgtggccggatctgatcaagaaggcgaaggaaggtggtctcgatgccatcgagacttacatcttttggaacggccatgagccgcaccgccgccagtacaattttgagggtaactacgatgtcgtcaggttcttcaaggagatccagaatgccggcatgtacgccattcttcgcattggcccgtacatctgtggcgaatggaactatggaggacttccagcttggctacgcgacatccctggaatgcagtttaggctgcataatgagccttttgagaatgagatggagacattcaccactcttatagttaacaagatgaaggattcaaaaatgtttgctgaacaaggaggaccgatcatccttgctcagattgagaatgagtatggaaacatcatggggaaattaaacaacaaccagtctgcatctgaatacatccactggtgtgctgacatggcgaacaagcagaacgtcggtgtcccatggatcatgtgtcaacaagacgacgatgtgccgcacaatgtggtcaatacctgtaatggattctattgccatgactggtttccaaataggacaggcatccctaagatttggacagagaactggactggctggttcaaagcttgggacaagccggatttccataggtcagctgaagacattgcttttgcggttgcgatgttcttccaaaagcgtggatctctgcaaaattactatatgtaccatggtggaaccaactttggtcgtacctccggaggtccgtacatcacaacaagctatgattatgacgcgcctttggatgagtatggtaatctcaggcaacccaaatatggtcacttgaaggaactccactccgtgctcaagtccatggagaaaactcttgtccatggagagtattttgacaccaactatggcgataacatcacagttaccaagtacactctggactcctcatctgcttgcttcatcaacaacagatttgatgataaagatgtcaatgtgaccctcgatggagccactcacctcctgcctgcatggtcagtcagcatcttgcctgactgcaagactgttgccttcaatagcgccaagattaagacccagacgtctgtcatggtgaagaaacccaacacggcggagcaggagcaggagagcctaaaatggtcttggatgcctgaaaacttgagtcctttcatgaccgatgagaagggcaactttaggaagaatgagctcttggagcagatcgtcacgtcaaccgatcaaagtgattacctgtggtacagaacaagtcttaatcacaaaggagaagggagctacaaattgtacgtgaacacgactggccatgaactttatgcctttgtgaacgggaagcttattgggaaaaaccattctgccgatggagattttgtcttccaactagagtcgccggtgaagctccatgatggcaagaactacatctctcttctgagtgcaaccgttggcctcaagaactatggcccttcgttcgaaaagatgcccacgggcattgttggaggccctgttaagctgatagacagcaatggcaccgcaattgatctctccaacagctcctggtcttataaggctggcttggctagtgagtacaggcagatccatcttgacaagccaggctacaaatggaatggcaacaatggcaccatccccatcaacaggccttttacttggtacaaggctacatttgaagctccgtccggcgaggacgcggtggtggtggacctgctgggcttgaacaagggcgtggcgtgggtgaacggcaacaacctcggccgctactggccgtcgtacacggcggcggagatggccggctgccaccgctgcgactaccgcggcgcgttccaggcggagggcgacggcaccaggtgcctcacgggctgcggcgagccgtcgcagcgctactaccacgtgccgcgctccttcctcgccgccggcgagcccaacacgctgctcctcttcgaggaggccggcggcgacccctcgggcgtcgccctccgcaccgtggtgcccggtgccgtgtgcacctccggcgaggccggtgacgccgtcacgctgtcgtgcggcggcggccacgccgtgtcgagcgtcgacgtggccagcttcggcgtggggcgcgggcggtgcggcggctacgagggcgggtgcgagtccaaggcggcgtacgaggcgttcacggcggcgtgcgtcgggaaggagtcgtgcacggtggagatcaccggcgcgttcgccggcgccgggtgcctgtccggcgtgctcaccgtccaggccacttgctga</cdnaseq>

Protein Sequence

<aaseq>MMGRRGSSWCRWWVALLVLAVAADAVGCTSVSYDDRSLVIDGQR RIILSGSIHYPRSTPEMWPDLIKKAKEGGLDAIETYIFWNGHEPHRRQYNFEGNYDVV RFFKEIQNAGMYAILRIGPYICGEWNYGGLPAWLRDIPGMQFRLHNEPFENEMETFTT LIVNKMKDSKMFAEQGGPIILAQIENEYGNIMGKLNNNQSASEYIHWCADMANKQNVG VPWIMCQQDDDVPHNVVNTCNGFYCHDWFPNRTGIPKIWTENWTGWFKAWDKPDFHRS AEDIAFAVAMFFQKRGSLQNYYMYHGGTNFGRTSGGPYITTSYDYDAPLDEYGNLRQP KYGHLKELHSVLKSMEKTLVHGEYFDTNYGDNITVTKYTLDSSSACFINNRFDDKDVN VTLDGATHLLPAWSVSILPDCKTVAFNSAKIKTQTSVMVKKPNTAEQEQESLKWSWMP ENLSPFMTDEKGNFRKNELLEQIVTSTDQSDYLWYRTSLNHKGEGSYKLYVNTTGHEL YAFVNGKLIGKNHSADGDFVFQLESPVKLHDGKNYISLLSATVGLKNYGPSFEKMPTG IVGGPVKLIDSNGTAIDLSNSSWSYKAGLASEYRQIHLDKPGYKWNGNNGTIPINRPF TWYKATFEAPSGEDAVVVDLLGLNKGVAWVNGNNLGRYWPSYTAAEMAGCHRCDYRGA FQAEGDGTRCLTGCGEPSQRYYHVPRSFLAAGEPNTLLLFEEAGGDPSGVALRTVVPG AVCTSGEAGDAVTLSCGGGHAVSSVDVASFGVGRGRCGGYEGGCESKAAYEAFTAACV GKESCTVEITGAFAGAGCLSGVLTVQATC</aaseq>

Gene Sequence

<dnaseqindica>5697..6296#5115..5222#4905..5018#4676..4785#4441..4529#4111..4307#3847..4008#3630..3748#3423..3510#3233..3338#3004..3092#2746..2898#2526..2618#2360..2426#1920..2032#1701..1796#107..286#ctgcaattcgatcgcttgcatctgcaaagttgcaactcatctcgtctcctcctctcctcccctcctcccctgtagcctagctaattaacttcaaattagcagcagtatgatgggacggcgcggcagcagctggtgccggtggtgggtggcgctgctggtcctcgccgtggcggccgatgccgtgggctgcaccagcgtcagctacgacgaccgcagcctcgtcatcgacggccagcgccggatcatcctctctggttccatccattatccccggagcactcccgaggtaaccgacttgttatactagccgtcaacccgtgcaacgcacgagataattttaaatattattttttagccctataaaattttactctgatagtatttcagtcatacaaaatcgtataggaatggtttaaattgatggcaaattaatgccaactgcaatatggtgatttttaatttattttctgagtgaattatattttaatcatagaattcgttgtatatttttaaaattgtaagatccatgtattatgaatggtgtacaatattgatattgttatcaccgttgagaattatattgaaattgtaactatgcgtagtaatgtgttaagtggaaaactaattaattaaataaattttggcattagatccaatctgtacatgtaaaaagaaataaaaaaagtagccacggaattaatcatatgttggtagcaacataatcattgtccaaaattctgtccgtgtagtcaacataatcatagactaaactctgtcagcaaagtaattagcacgttactatgtactcttccaggtgctcatttttcaaccgtgtcatatatatagtttacccaggttaaaattgtttgagatgagaaaccaatctagattgagaaacaataatacccgatcgacttggagatatctgagcgcgtcctaaagttcatctctatttccatttgtgttgatgcctccgcttgaaatccagatcatcggcaatatatccaactgaattcccaacaaaattgtatgtagagattattggatgggatttgtgaggcccatgggaccatgatattaactataaattaataatgtgtgggtctatttgatcaacggcagattcaccaggttaacgctgtataggtatagatattcctagtgtatactatttttgtttttcaatacatgatgtcgttaattttttaatatgtttgaacatttgtaataatttatggagatacataagatataaatcatgcttaaaatactttgagtgataaaacaactcacaaaaaataaattataattatgtttttttaataagaagaatggttaaatgtgtgaaaaaatcaacaacatcatgtattaaaaaatagagatagttgataatattaatctgcaaattaaatgcatatacaactttgagtgttttgtactagtaggatacagagttgcttgcttgagtgtttcttttctttttgtgccatagatcgtgatgagctaagcagtgcgaggagttttatgttctatacttttatatacttatgcatgcatattatgttgtgacttatattcgttcgatctttattttcttaatttgtgttaagaaattaatgaacataagcaatatatgtacgtgcgcaaaagattaatttgattttttttctatctaatctaatcttattgttgctatgcagatgtggccggatctgatcaagaaggcgaaggaaggtggtctcgatgccatcgagacttacatcttttggaacggccatgagccgcaccgccgccaggttcaatattactacttttgctttagcacataaacactactacgtactgcagctattacatacaataacaaccatggataaatactagtaatactataacaatgtttttgctttgatcggcagtacaattttgagggtaactacgatgtcgtcaggttcttcaaggagatccagaatgccggcatgtacgccattcttcgcattggcccgtacatctgtggcgaatggaactatgggtatgtatcatgtatataaatgctaaagcatttgtgtgtcaaagtgataaatagaatagaatattatattgatctgcaaattaatcgaatattatatctataatgttcatatagaattagagaaaaaaacgaaatagaatagactattatatcgatctgcaaattaatcaaatattatatctatagtgttcatatagaataagaggaaacaagcgagcacactaaactactctagtttctttctataacattattatgtgtccatgcatgcatgttgaagtgctcactgtgttttgttgttttctaaaacaaatgccaaatgtgcagaggacttccagcttggctacgcgacatccctggaatgcagtttaggctgcataatgagccttttgaggttaaataataataataataataaaattctcatctatttttgtgtacttttacatatactagcatataattaatgcaagtgtttttttccatgatatagaatgagatggagacattcaccactcttatagttaacaagatgaaggattcaaaaatgtttgctgaacaaggaggaccgatcatccttgctcaggtattgtaatgatcattcttcaatatgattgaacaatgggaaattagcatgttaataatttgtactattgtcattccacaatatatattgtcaattaatatcaatgcattaatggatcaatgcacagattgagaatgagtatggaaacatcatggggaaattaaacaacaaccagtctgcatctgaatacatccactggtgtgctgacatggcgaacaagcagaacgtcggtgtcccatggatcatgtgtcaacaagacgacgatgtgccgcacaatgtggtgagcatgggttttaatcccacaagaatatagaatattatatgaatttatttgtttatcactcatctaataacatgagtttgtcattgttttggaccgctctaggtcaatacctgtaatggattctattgccatgactggtttccaaataggacaggcatccctaagatttggacagagaactggactggctggtatttttttttcttccattagtatttctctcattgtttacaaaattaacttttagtacatatatctctttgtttgcaaaattattttttgatgaacatggaggagatttatcttaatttgttgatgtacttaacgttaggttcaaagcttgggacaagccggatttccataggtcagctgaagacattgcttttgcggttgcgatgttcttccaaaagcgtggatctctgcaaaattactatatggtatgctggctagcttgtatctctttcacaatgactgaattttcgttgatttatgctgagttttttttttccattttttgttagtaccatggtggaaccaactttggtcgtacctccggaggtccgtacatcacaacaagctatgattatgacgcgcctttggatgagtatggtaagctttgattaatatattttaccgtactgttaattatatggtgaatttgaataagaaagcaattttttgtcttattttaattataatcttgttggtctacttttgatttattacaggtaatctcaggcaacccaaatatggtcacttgaaggaactccactccgtgctcaagtccatggagaaaactcttgtccatggagagtattttgacaccaactatggcgataacatcacagtaatattcagatcacgcccttcttttaatcaaaattatcacgtctaatgcaaacatatctaatgcatgcatattggtactatctctgatcaatgtaggttaccaagtacactctggactcctcatctgcttgcttcatcaacaacagatttgatgataaagatgtcaatgtgaccctcgatggagccactcacctcctgcctgcatggtcagtcagcatcttgcctgactgcaagactgttgccttcaatagcgccaaggtatttttcctttctcaataatcaataatgaaattaaaatgagaccaagtgtaaggtctataattcatctcttaattttgttttcctcttggtatgacctagattaagacccagacgtctgtcatggtgaagaaacccaacacggcggagcaggagcaggagagcctaaaatggtcttggatgcctgaaaacttgagtcctttcatgaccgatgagaagggcaactttaggaagaatgagctcttggagcagatcgtcacgtcaaccgatcaaagtgattacctgtggtacagaacaaggtatttttttaaaaaaaaaatctctttatactaaagaaaagagatcatgatgatgtaaatttgaaatgattccgacaaaaaaatatatatatgttacaaatttagaacgtcaccaacaaaaaaaaaattgcagtcttaatcacaaaggagaagggagctacaaattgtacgtgaacacgactggccatgaactttatgcctttgtgaacgggaagcttattggtgagtatcaaagttattttttttccatattttcgttgcaccattcttttaattctgtgtgggtcgaaattaaagaatgtttgtgaacctgcgggtcaaaattaaagaatgttcattgacaaacatgtgtgttcataatttgtcagggaaaaaccattctgccgatggagattttgtcttccaactagagtcgccggtgaagctccatgatggcaagaactacatctctcttctgagtgcaaccgttggcctcaaggttcctaattttctttcttgaatgctcacttccatcgtatcagcaacgaactcatcttctttatttgcaattaatcatgtataccagtgataaattgtttgatcattcttggtaaacagaactatggcccttcgttcgaaaagatgcccacgggcattgttggaggccctgttaagctgatagacagcaatggcaccgcaattgatctctccaacagctcctggtcttataaggttacacattatttttcatcaatgcttagttgtttgttaactttgctggtattgatcatatagtgtttcttgctttgatgtttttttgtgttgtaggctggcttggctagtgagtacaggcagatccatcttgacaagccaggctacaaatggaatggcaacaatggcaccatccccatcaacaggccttttacttggtacaaggtacagtatatgtccattatttactcactctctccggttttataattcttaacattctgaacaatgacataattttcaaaatatatttctgactatatttctctattacaatatattaatataaatatatatatatattacttttgttatagtactttgtaagtcaaatttatatatgttgttttggtgcctttaaactagatatttttaaagtcattattagttaatttataaaagtttaacctaaaacttatcaattatgaaactggagtaatttaattacctgtatgatttcatttcatcgtttcattctttcacctgcaaaaataaaaggatttttaatactttttttgttttcttatgaagactacaatttacttaatttaccttccctatgaaatttcatcatgtcattaattctttcaccgccaaaacaatcttaatactttggttacttttttttttgttatgaaggctacatttgaagctccgtccggcgaggacgcggtggtggtggacctgctgggcttgaacaagggcgtggcgtgggtgaacggcaacaacctcggccgctactggccgtcgtacacggcggcggagatggccggctgccaccgctgcgactaccgcggcgcgttccaggcggagggcgacggcaccaggtgcctcacgggctgcggcgagccgtcgcagcgctactaccacgtgccgcgctccttcctcgccgccggcgagcccaacacgctgctcctcttcgaggaggccggcggcgacccctcgggcgtcgccctccgcaccgtggtgcccggtgccgtgtgcacctccggcgaggccggtgacgccgtcacgctgtcgtgcggcggcggccacgccgtgtcgagcgtcgacgtggccagcttcggcgtggggcgcgggcggtgcggcggctacgagggcgggtgcgagtccaaggcggcgtacgaggcgttcacggcggcgtgcgtcgggaaggagtcgtgcacggtggagatcaccggcgcgttcgccggcgccgggtgcctgtccggcgtgctcaccgtccaggccacttgctgattgatctacatgcatatatatggagtggccatgtctttgattaattaggtctttaattagtcgcttaattaggatggtttgtttattgagttaagctggtagtcgcccctggtgcatgtgttaattcgggggtaaaaagtgagtttattaattagggttctctgatcaactgttgattgcagagacgcagagtgtgatatatactgggaccaaatatttcatctatgaagtacttttacgatcgagtggttaaacatgtgtgttaatgcccttg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0533400, RefSeq:Os01g0533400