Os01g0533900

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Revision as of 04:43, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0533900| Description = Similar to Multidrug resistance protein 1 homolog| Version = NM_001049789.1 GI:115437271 GeneID:4326410| Length = 60...")
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Gene Name

Os01g0533900

Description

Similar to Multidrug resistance protein 1 homolog

Version

NM_001049789.1 GI:115437271 GeneID:4326410

Length

6006 bp

Definition

Oryza sativa Japonica Group Os01g0533900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:21008900..21014905

Sequence Coding Region

21009032..21009052,21009588..21009642,21009852..21010027,21010768..21010989,21011094..21011332
,21011835..21012360,21012442..21012715,21013097..21013760,21014482..21014710
,21014806..21014905

Expression

GEO Profiles:Os01g0533900

Genome Context

<gbrowseImage1> name=NC_008394:21008900..21014905 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:21008900..21014905 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>gccaaccacgggtggaatgcggtgattttgaattttgtctaccttggcattggagcaggatttgtttcaactcttcaggtatcatgttggacaatcactggagaaaggcaggctgcacgaatcagggcattgtatctcaaggcaatacttagacaggacattgccttttttgacaaggaaatgagcactggacaagtggttgagaggatgtcaggggacacattcctcattcaagatgccattggagaaaagagtggcaagtgtatacaactcctttctaccttctttggaggcttcattattgcatttgtgagaggatggctcttggcacttgtgctgctctcatgcattcctccaattgcggtggccggtgcttttgtgtcaaggttgatgacaagaatctcaacccgcatgcaagaaaagtatggtgatgctggaaacattgctgaacagactattggggccattagaaccgttgcttcattcaatggcgagaagcaagctataaacacatataacaaattcataagaaaagcttatgaatctactctacaagaaggtgttgttaatggccttggattaggtaccgtaatggcaatcttgttttgcagttatggtttggcagtttggtatggatcgaaactgatagtcaaccgtggatacaatggtggcatagttataaatgttctaatgtctgtcatgatgggtgcaatgtccttaggtcaggcaacaccatcaataacagcttttgcagaaggtcaaggagcagcatatagaatgtttaagacaatcaaaagacagccagatattgatgtatgtgataccaaaggtatcatattggaagacatcacgggtgatgttgaactgaaggatgtgtacttcagctatcctaccaggccggaatatttggtattcaatggattctccttgcaaataccaagtggcagaacaatggccctagttggagagagtggcagtggaaagtcaactgtgatcagcttggtggagagattttatgatccacagtctggggaagtcttgattgatggaattgacattagaagaatgaatctgggatggatacgaggaaaaatcagtcttgttagccaagaaccagtgttgttctcaagtacaatcagggaaaacatcgcctatgggaaggaggatcaaactcttgaagagatcaagagagcagtagagcttgcaaatgcagcaaaatttgttgataagttgccaaatggtcttgagacgatggttggggaacgtggaattcaattgtccggagggcagaagcaaagaatagcaattgctagagcaattataaaaaatcctaggatcttgttacttgatgaagcaactagtgcattggatatggaatctgagagggtagttcaagatgctttgaatagggtaatgcttgaaaggactacaattattgttgcacatcgcctaagtacagtgaagaatgctgacgtgatttctgttctacagcagggaaagatggttgaacaaggttctcatgtagaactgatgaagaaacctgaaggtgcttatgctcagctgatccagctccaaggggcacagcaggatgctgaaatccataatgacgacactgacatgataataagaagcgattcaggctctaggtctataaatgtaaaaccaagaagccaaagcacctcatttaggagatcaattactaaaggctcctcttttgggcatagtggcaggcatcctatccctgctccccttgactttccagatcccatggaattcaaggatgatctgggcatggaggagactacagacaaagtgcctcgtggccagaagaaagcttcaatcagtcgactgttctatctgaacaaaccagaagcttttgttcttgtacttggttctgtaaccgcggcaatgcatggactcatgtttccaatatttggcatactgatctcaagtgcaataaagatgttttatgagccaccatcagaactcctgaaggactccaggttctgggcaagcatgtttgttgtggtgggagcttctgcatttgttctgattccaaccgagtacttcctgtttggattagcaggtggaaagcttgtggagcgtatacgttcactgacattccgaagtgtcatgcaccaggaaatcaactggtttgacaaacctgaacactctagtggatcgattggtgcaaggctgtctgttgatgctctgaatgtgaagcgccttgttggagacaatttggcacttaatgtccagactgtatcaactgtcatatcaggttttacaatagcaatggtggcaaactggaagctggcattgattataacagtggtagttcctttggttggtttccaagcctatgctcaaatgaagtttttgaaaggtttcaacaaaaacgcaaagctgaagtatgaagaagcaagtcaagtagcaactgatgcagttggaggcatcagaactgtggcatcattttgtgctgagcagaaagtgatagaagcatatg</cdnaseq>

Protein Sequence

<aaseq>ANHGWNAVILNFVYLGIGAGFVSTLQVSCWTITGERQAARIRAL YLKAILRQDIAFFDKEMSTGQVVERMSGDTFLIQDAIGEKSGKCIQLLSTFFGGFIIA FVRGWLLALVLLSCIPPIAVAGAFVSRLMTRISTRMQEKYGDAGNIAEQTIGAIRTVA SFNGEKQAINTYNKFIRKAYESTLQEGVVNGLGLGTVMAILFCSYGLAVWYGSKLIVN RGYNGGIVINVLMSVMMGAMSLGQATPSITAFAEGQGAAYRMFKTIKRQPDIDVCDTK GIILEDITGDVELKDVYFSYPTRPEYLVFNGFSLQIPSGRTMALVGESGSGKSTVISL VERFYDPQSGEVLIDGIDIRRMNLGWIRGKISLVSQEPVLFSSTIRENIAYGKEDQTL EEIKRAVELANAAKFVDKLPNGLETMVGERGIQLSGGQKQRIAIARAIIKNPRILLLD EATSALDMESERVVQDALNRVMLERTTIIVAHRLSTVKNADVISVLQQGKMVEQGSHV ELMKKPEGAYAQLIQLQGAQQDAEIHNDDTDMIIRSDSGSRSINVKPRSQSTSFRRSI TKGSSFGHSGRHPIPAPLDFPDPMEFKDDLGMEETTDKVPRGQKKASISRLFYLNKPE AFVLVLGSVTAAMHGLMFPIFGILISSAIKMFYEPPSELLKDSRFWASMFVVVGASAF VLIPTEYFLFGLAGGKLVERIRSLTFRSVMHQEINWFDKPEHSSGSIGARLSVDALNV KRLVGDNLALNVQTVSTVISGFTIAMVANWKLALIITVVVPLVGFQAYAQMKFLKGFN KNAKLKYEEASQVATDAVGGIRTVASFCAEQKVIEAY</aaseq>

Gene Sequence

<dnaseqindica>133..153#689..743#953..1128#1869..2090#2195..2433#2936..3461#3543..3816#4198..4861#5583..5811#5907..6006#aaatttagagaccagagcaaaacactcgtcgtcgtcgccgtcgcgtccgccggagcatgcttcgccctcggcggcggcggcggctttccgcggccgcgacagcgagtcggcagatgcagcagggctatctgagccaaccacgggtggaatgcggtattccctgataaacccacgaatctgattaccagactaggttttgttgttgttagtgtagtttgcgatctatttgaggggcgatgatttctttctaagttgggatatactgaggtgaaataggcgttattcgtgctttcagaatgggcaggattgggatcaggtggtcacttggttgaaattgccttgatagttttcccttcatttcgattcgatttgggtatatgctagtaatactgtaaatctgtaatagtaagctacgacggcatgtaggcgacttattcttgtcaataatcagttctattttcaaaaatgtgtcagtaataaggttgataggatatgaatcagtagccaacaagacattccaatcacaatcatagtagttgtatcgacgaacagaatcaatcaatcacaatgtattttcagagttgcagcgtatagggcagaggtgaaattatcggtgcttgttttgtcatgtaaatgttttttcaacgtcttaacctctgaattaaggtgctctttctttttttctcaggtgattttgaattttgtctaccttggcattggagcaggatttgtttcaactcttcgtaagtggctttccaatgcaacgaaattaggacatcttaatatccactgttggacggaaaccatctctttttggattacgaatttgatgaataataggtgtagtaatgtacttgtgtttctgtattgatactacagtagtgatgttcatatcgttttaaggctactactagaaacaaaatttcctgatatattggctatgttttggtagaggtatcatgttggacaatcactggagaaaggcaggctgcacgaatcagggcattgtatctcaaggcaatacttagacaggacattgccttttttgacaaggaaatgagcactggacaagtggttgagaggatgtcaggggacacattcctcattcaagatgccattggagaaaaggtagtttgttttatctagtgtaaagagtgtgctttggattgagagaacacaaatacaactccctttctgcaatgcattgctagatacttaccagtaagtgcatcattagatgcaacagatctctatggttcatatggaaaatcttgctccaaatgattcttttgttgcacccacccacccacctgaacacaaactcaaagccagctctaaaaaataagaggtaactgaaaaaagaggacatgggggttcaaactcacagaaaaacaatttactttatttaaatttatctaattcattgcatacatggtttgaggtaataactcagtttagtagtcaatgttagctacatgaatacacccatacatcataccccacagtacagaaatatgagtttgagctccattctaatgtatgatatatttaattatttaatccttggctgtatgcaagtttgacagttattgagtcacactgtattcacatggatcaatatcaataatgtatgtaccatatttcttgtgaaataccttttcattgaagttagcagatcataaatggagattgattcaatcaatacgaattgtggatctataacatggactcatcctcagattttgcaaaatataatgaactatcgattttaaataataaataaatatgtactcctttttgtatagtataagcatctagcaaaatctaactagcactacatattcgtttaacacatcctttttacttagagtggcaagtgtatacaactcctttctaccttctttggaggcttcattattgcatttgtgagaggatggctcttggcacttgtgctgctctcatgcattcctccaattgcggtggccggtgcttttgtgtcaaggttgatgacaagaatctcaacccgcatgcaagaaaagtatggtgatgctggaaacattgctgaacagactattggggccattagaaccgtgagtgctagcagtacagtagataattaatatctgagtcagctatttcctgttcctaccaagttaatcagtttgttttttcttaattggcacattctatgaaggttgcttcattcaatggcgagaagcaagctataaacacatataacaaattcataagaaaagcttatgaatctactctacaagaaggtgttgttaatggccttggattaggtaccgtaatggcaatcttgttttgcagttatggtttggcagtttggtatggatcgaaactgatagtcaaccgtggatacaatggtggcatagttataaatgttctaatgtctgtcatgatgggtgcaatgtaagtttcatatattaaccctgctcccatgaatagttaagataagattaaaacttgttacagaatttacttgttagtgtagattatgggaaggtgggtacatgtcaggtggttattacgagcattgtaggcttgcatttacattttgtaaggagtttacaggtagatggaccattttgtttcttgagtttacataacactatacatgctaaaatatacaccggaaaagaacagaacatctgataaaacttaaaggttaatgaataattagccatatttctctgtcaatgtacctctctgtgtatcccatttgttgaaatgcaaaatatgttctttactactcccaggacaacatgggccatgacttactgagttattacagcaatcagagtttccaatagcagtgaaactagtcatattaacatgtgaaataaattatttccatgtcactgtcatttttcaggtcatctggttcctgatttggcttatatgtcttctgtaggtccttaggtcaggcaacaccatcaataacagcttttgcagaaggtcaaggagcagcatatagaatgtttaagacaatcaaaagacagccagatattgatgtatgtgataccaaaggtatcatattggaagacatcacgggtgatgttgaactgaaggatgtgtacttcagctatcctaccaggccggaatatttggtattcaatggattctccttgcaaataccaagtggcagaacaatggccctagttggagagagtggcagtggaaagtcaactgtgatcagcttggtggagagattttatgatccacagtctggggaagtcttgattgatggaattgacattagaagaatgaatctgggatggatacgaggaaaaatcagtcttgttagccaagaaccagtgttgttctcaagtacaatcagggaaaacatcgcctatgggaaggaggatcaaactcttgaagagatcaagagagcagtagagcttgcaaatgcagcaaaatttgttgataagttgccaaatgtacaacacaaatttaaatgcacataatgttaattctgtttctattgttgatcaatatctaatggttatggaacattgcagggtcttgagacgatggttggggaacgtggaattcaattgtccggagggcagaagcaaagaatagcaattgctagagcaattataaaaaatcctaggatcttgttacttgatgaagcaactagtgcattggatatggaatctgagagggtagttcaagatgctttgaatagggtaatgcttgaaaggactacaattattgttgcacatcgcctaagtacagtgaagaatgctgacgtgatttctgttctacagcagggaaagatggttgaacaaggtatggcatttaaaaactttcgaaagagattatcttaaatttcatatcgattagtaacatgttgttcctgcagacagtatgagtacaaacctaatacccactgtgtagtgctcatgatacagggtacttttaaattctcaagttttctacacattttaattggctaattaacacatcttaactagataaatcaaagctgcttctgactactaatcaacagatagacaacaacctatttactttgggtatgtgggttttaaccgtcatactcccttaaagttataggccctctcttttttattcgacatgattcagcacgctacttgatctacaggtttaattttgacttgctggttgtttgtgttattcaattccgagtaggttctcatgtagaactgatgaagaaacctgaaggtgcttatgctcagctgatccagctccaaggggcacagcaggatgctgaaatccataatgacgacactgacatgataataagaagcgattcaggctctaggtctataaatgtaaaaccaagaagccaaagcacctcatttaggagatcaattactaaaggctcctcttttgggcatagtggcaggcatcctatccctgctccccttgactttccagatcccatggaattcaaggatgatctgggcatggaggagactacagacaaagtgcctcgtggccagaagaaagcttcaatcagtcgactgttctatctgaacaaaccagaagcttttgttcttgtacttggttctgtaaccgcggcaatgcatggactcatgtttccaatatttggcatactgatctcaagtgcaataaagatgttttatgagccaccatcagaactcctgaaggactccaggttctgggcaagcatgtttgttgtggtgggagcttctgcatttgttctgattccaaccgagtacttcctgtttggattagcaggtggaaagcttgtggagcgtatacgttcactgacattccgaagtgtcatgcaccaggaaatcaactggtttgacaaacctgaacactctaggtgtgtacacagtctttctctcatcatattattctgccttttgtcctatgatttattctatcaaaattccatgttccagtacttacaccaatgtcatggtgaatactctctagtctactcaaaacaactgaatagcaaagaatttaaaaatattgaacaaaagttttggcatgtaatataatccctactaatctttcacagtcctttgtttctcatcttcccatttgaaaagttcaacacctatgaaatcataatttatgactttccctgaaacaacgttaattttccactggttatgtggtgcaaaaagagtgtttcataaacaaaggcacattggaaaaaagagacaagtgcattttgatgaacagtatatactaggtagcattatccccccaaaatgaccagtactatattaattcaggtggatatttagaatggttttcatgcatgcacacacaggtgcatcatcacattcaccaaatgtgcctccagattgatgcaaacattcagatttcatactaaccatcccatcttctattccttggaataatatccttgcataaatctcaaagtgctttggatggttaagatagtacacgtactatacatatggttttagattttccagatctatacattaaaaagttaagaattgtgctcatcagctagcactatttttctactgttgtccttacgccataagtctcaacatttgttgtagtggatcgattggtgcaaggctgtctgttgatgctctgaatgtgaagcgccttgttggagacaatttggcacttaatgtccagactgtatcaactgtcatatcaggttttacaatagcaatggtggcaaactggaagctggcattgattataacagtggtagttcctttggttggtttccaagcctatgctcaaatgaagtttttgaaaggtttcaacaaaaacgcaaaggtacatacaatggattaatcatgagcattgtgctacccttacagatgctttctcatgcaacacgttgtttgatgttattctttgttgtaatgcagctgaagtatgaagaagcaagtcaagtagcaactgatgcagttggaggcatcagaactgtggcatcattttgtgctgagcagaaagtgatagaagcatatg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0533900, RefSeq:Os01g0533900