Os01g0552000

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Revision as of 04:44, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0552000| Description = Conserved hypothetical protein| Version = NM_001049845.1 GI:115437497 GeneID:4325849| Length = 4838 bp| Definition ...")
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Gene Name

Os01g0552000

Description

Conserved hypothetical protein

Version

NM_001049845.1 GI:115437497 GeneID:4325849

Length

4838 bp

Definition

Oryza sativa Japonica Group Os01g0552000, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:22379215..22384052

Sequence Coding Region

22379215..22379577,22379833..22379917,22380004..22380372,22380491..22380736,22380825..22381097
,22381398..22381562

Expression

GEO Profiles:Os01g0552000

Genome Context

<gbrowseImage1> name=NC_008394:22379215..22384052 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:22379215..22384052 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggagaagttggcaaggctgcaatatcttaaaagcaaggacccaaaggactgtgctcttctctatatagcattaaatagaacaaaagtattagttggcctattcaagattagcagagatgaaaaggataaacgtctctatgagtttctctccaggaacttccaggaagaaaaacacaaatctgctgctctgaaaaatgcatatgtgctaatgggaaggcatcaatgggagcttgctatagcatttttcctccttggaggtgatacatcctcagccatcagtgtttgtgcaaagaaccttcaagatgaacaacttgctattgtaatttgtcgacttcttgagggatctggagggcccttggagcgtaatctcattgctaatgtactgctccctgaagcagttgataaaggagaccactggctttcaagcctacttgaatggatgttagggaactactctcagtctgtgaatcaattacttgattgccacctcaagtcactgattgaagaatccagcattcccggtgatacaaatgtctttgcagaccctggagtgggtcagtattgtgcaatcattgcgacaaaaagtagtttcagaaactgtgttggtgaagctcaatctgcaaatttatctaagctttcattagcaatggcttcatgcgccttgaacagatgtggactgcctcttgaagcacttgaatacctatgttgtaactcgggcatagagggaaaggacaacacctcactggatggcggagacaagaagattgtttatggaatattgaaccctttccatgcttcgtccaactggctctcagcatctgtagtcagtgatgttgaatcaaacctgaaaataactatggcttcaaaatatctgtcgcgcgtgctgagaaatcagtcactctgttcacggtgcagcctaccactaactaaagataaggtcctgcaagaattcaacagtaatcacgtgaatgaactttcacgtgatgtcaaggcagcgctacaagtattcgataaaaaattctcacttcaagttgctgatatagctgagaagatccttaccttttgttgcaacgatggtatattttttctcgcgtacgtgttgttatggggtagtatatcatcagatgttggaaccggtcgtacatcagctatgcttacagttatggacctccttgaatacaacatggagttttccttttcttggttatgtcatgacataaaagcattgcttaccatgaccagtccagttataggtgcttgtgtcaacagagagtcctttcaagtactattagatcagttgctgcaagctgtacatgataaaattcatggtgtatcaattggcacagatgggggcacagtcaatggtttgttgtgtaatatacaacaagaaagaagtgagaatcagagtcttccaattgatgaaaaatggcatttgataggtatttctttgtggactcgattgtcatctttcatgaaacagtttttgactgagttcgttg</cdnaseq>

Protein Sequence

<aaseq>MEKLARLQYLKSKDPKDCALLYIALNRTKVLVGLFKISRDEKDK RLYEFLSRNFQEEKHKSAALKNAYVLMGRHQWELAIAFFLLGGDTSSAISVCAKNLQD EQLAIVICRLLEGSGGPLERNLIANVLLPEAVDKGDHWLSSLLEWMLGNYSQSVNQLL DCHLKSLIEESSIPGDTNVFADPGVGQYCAIIATKSSFRNCVGEAQSANLSKLSLAMA SCALNRCGLPLEALEYLCCNSGIEGKDNTSLDGGDKKIVYGILNPFHASSNWLSASVV SDVESNLKITMASKYLSRVLRNQSLCSRCSLPLTKDKVLQEFNSNHVNELSRDVKAAL QVFDKKFSLQVADIAEKILTFCCNDGIFFLAYVLLWGSISSDVGTGRTSAMLTVMDLL EYNMEFSFSWLCHDIKALLTMTSPVIGACVNRESFQVLLDQLLQAVHDKIHGVSIGTD GGTVNGLLCNIQQERSENQSLPIDEKWHLIGISLWTRLSSFMKQFLTEFV</aaseq>

Gene Sequence

<dnaseqindica>4476..4838#4136..4220#3681..4049#3317..3562#2956..3228#2491..2655#tttggtagattcagtttatcagaaaattacagcaacacaatgttactacagaaacacagtgctcactgttctaatgatctatggaacttgttggatatagctgccaaaatgagtggacctctggcatcatatcacccgagagcacttattcagtctctttattcaggtgtccactattttagattctcaaaatattttttctctagattctacatgttttgcaaggcctcgctagtctgtttgtttataagcttctattttaatctacatgtgatactgagaaagtgaaacaacactacatgtttttgtgcacctttcatcgctaacagtagccgattgtttttgtgctgacatagccgattgtttgagatatgggccatttaatgttctgttctatcatgtggagtctagtttgtcaagataattgttatcatttattataaaatattcctgtcatgtctcataaataaagcctgcacacaaatagattgcccaggaatgataaagtaaaactacagatataaaagcctccgcggtactaagcaaatcccgactgcatcacttggattagggtgtttggatttagggataaaactagaaggtatgagtagggatttggatatggagatattattggaaaaatatttagatcaaataatctggaacttgccgtttcctatcagttatcttttagtttcatccatcgagaaatatactgtaacaacactactaaattttgtgcaacatgataaaatggtgccattaacaaccctactaaagtttgtgtaatatgatcttttgagtaaatttctgttttgacatattgtggctttcaatattttctgaaatctttggtataaatgctaattatttctagctgaaattaattctggccttttatattagcggtgtgggtcaagttgaaaggatagaatataataacgctttggcaaaatgttatgttgctctttggtttgatatgccttcttcaaattgacaaaatccatgatgatttaatctgtacctggcaacctattggattttatctttatgacccccctgtacaagtccaagatcatgattgacaaaatccacagcatattgtgtaaatcaggtaatgatattaactctttttattgctctgcgtaggtcaatggaaacgggcaaacactgttctgcagcatcttgttcaatccatgcaagcaaataaaatatcaaacaccttgttggagtgcagtttctgtggtaaatcatgccataatattcctgaatgccctttatctgaaagcttcaccgatatgacatctaatgacatatctaatagagggttactttggggtgacaatcaacgtagcacagcctttagtttgctatcaccatcaaattcatatcctcggatggaggatatcaacaccaccactagcacatctcaaagttcagaaataaataagctccttgctacgaatgttagcatatcaacaataagtgacatggagagaacccagatagttgcactttctgatcttttgggtaaaattactgatcagagccatgcatctccctataaaagccttgatgaagcagggagaaggtaaaagtaactcctagattaacatatgtaactgttttttttttcagtgacatattgctatatatatattttgttttactagaatccaggggcttgtaagtgttgtacaagtttatgctactcatttttgtatggtatctacattaatttttaattttgtttctcttaaggttctgggttgctgtgcagttcgaacgcctatatgcacttaggagatctgaagatccatccagtgccgaagtcttccatgttgattctgcttctatcgcgtgggccttacagtctgattgtcaggatgatctacttaattctgttcttcctgcagaaccaagttggtctgagatgcgaaaccttggtatggggttatggtacaccaacgtgtcccagttaagaaccaaggtatgtctcaacaacaatttatgttctcataggttttgctaaaagcaaatggtcgaaacagtgataagtgtttgtatgtgtgagagcaagactctcttgttgactaataaaatcctcataggtcattgaaagtttatgaactatgctatatctcaattactgaaatttctatttacaatttggtctgtagcactatagcatttgaattaatgtagatccttgtttggaccacttatcctacattgaatgattccctcgacgtgattgaagtattatgttacagttattcttgagatgccatcatattgaacttagcttttctcaactgctgaactatttgtcattgttttagtccagtgtccagattctaggaattaaattcaaatgaatcttctaatgttctctctctgccctatatctggacattgtaatgaatattgttcacatttgcagttgtctggataatcacctgtgctgattaggtatgtctgacattgtagatggagaagttggcaaggctgcaatatcttaaaagcaaggacccaaaggactgtgctcttctctatatagcattaaatagaacaaaagtattagttggcctattcaagattagcagagatgaaaaggataaacgtctctatgagtttctctccaggaacttccaggtatcttggtgtggtagagactagtaattggatagtttgacatctttaactatgcgcttatgcttaacattcttatctacatggttgtgtcattatgattgtaaatgtgaactaacttatacttgctagttttggcattgcaaatgagcattctgctagaaacaagatagttttatcagtatacttggactgtatctttgttaagcaaaatgcacacgaaacatgagaggaatttcagatacataatgttgagaagtatattctacatcatacttattgggataaatcttatctatctaggaagaaaaacacaaatctgctgctctgaaaaatgcatatgtgctaatgggaaggcatcaatgggagcttgctatagcatttttcctccttggaggtgatacatcctcagccatcagtgtttgtgcaaagaaccttcaagatgaacaacttgctattgtaatttgtcgacttcttgagggatctggagggcccttggagcgtaatctcattgctaatgtactgctccctgaagcagttgataaaggagaccactggctttcaagcctacttgaagtatgtcattatgtctgccttcttctttaatgttcttcattttgaactatcattcagcttttcaactaaagttcatgtaaattttcagtggatgttagggaactactctcagtctgtgaatcaattacttgattgccacctcaagtcactgattgaagaatccagcattcccggtgatacaaatgtctttgcagaccctggagtgggtcagtattgtgcaatcattgcgacaaaaagtagtttcagaaactgtgttggtgaagctcaatctgcaaatttatctaagctttcattagcaatggcttcatgcgccttgaacagatgtggactgcctgtaagtattcttatcacatgaatgattcttgcttgggtaaagggtgccctgttgacatctcaatgttatatattctattttgtattgttctaaatcttgtttctttctcactgattagcttgaagcacttgaatacctatgttgtaactcgggcatagagggaaaggacaacacctcactggatggcggagacaagaagattgtttatggaatattgaaccctttccatgcttcgtccaactggctctcagcatctgtagtcagtgatgttgaatcaaacctgaaaataactatggcttcaaaatatctgtcgcgcgtgctgagaaatcagtcactctgttcacggtgcagcctaccactaactaaagataaggtcctgcaagaattcaacagtaatcacgtgaatgaactttcacgtgatgtcaaggcagcgctacaagtattcgataaaaaattctcacttcaagttgctgatatagctgagaaggtaacataagggataccatattcttttatttttgttctttttgttggacttctcataacaaaccatattatctgttgtgtatccagatccttaccttttgttgcaacgatggtatattttttctcgcgtacgtgttgttatggggtagtatatcatcagatgttggaaccggtacttgtggtcttgaaggttgtgctttccatccaattgattatatgtttatggtgtcaagtaaggagagctgcaagtttcttacacaatatgttgtctcctgctgcttcatatgttctgctctgaacatggactgcgctaatactactccatgcacaattaaagtgggcaagtacattatggcaagtttatcacacttcctgagtactagcaggttacttctgaaacaagacaatactagaacttttgtgttaggtcgtacatcagctatgcttacagttatggacctccttgaatacaacatggagttttccttttcttggttatgtcatgacataaaagcattgcttaccatgaccagtccagttataggtgcttgtgtcaacagagagtcctttcaagtactattagatcagttgctgcaagctgtacatgataaaattcatggtgtatcaattggcacagatgggggcacagtcaatggtttgttgtgtaatatacaacaagaaagaagtgagaatcagagtcttccaattgatgaaaaatggcatttgataggtatttctttgtggactcgattgtcatctttcatgaaacagtttttgactgagttcgttg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0552000, RefSeq:Os01g0552000