Os01g0566500

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Revision as of 04:45, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0566500| Description = Similar to Dioxygenase RAMOSUS1| Version = NM_001049898.1 GI:115437713 GeneID:4327933| Length = 2546 bp| Definition...")
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Gene Name

Os01g0566500

Description

Similar to Dioxygenase RAMOSUS1

Version

NM_001049898.1 GI:115437713 GeneID:4327933

Length

2546 bp

Definition

Oryza sativa Japonica Group Os01g0566500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:23322604..23325149

Sequence Coding Region

23322708..23322859,23323102..23323394,23323729..23323913,23324003..23324758,23324853..23325125

Expression

GEO Profiles:Os01g0566500

Genome Context

<gbrowseImage1> name=NC_008394:23322604..23325149 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:23322604..23325149 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgacctccctgaccctgatcgccacaccatgcacggctcctagatcatcctcgtccttcgcactcgctccacggctgccgcctcgttgcagcaacgcgactgcagcacgtcgccgcgccgtgagggcaaccacgctgcaatcggatcaggaacctgcaggatcaggagacagcggcgccacgacgacgaagctgtctgcctcgaccagcgtccgccaagaacgctgggaaggcgacctgcccatcgagggatgcctccctccttggctgaatggcacgtacatcaggaacgggccggggatgtgggacgtcggggagcacgcgttccaccacctgttcgacggctacgcgacgctcgtccgcgtctccttccgcggcgggggtggtgcgcgcgccacgggggcgcaccggcagatcgagtcggaggcgtacagggccgccgtggcgcgcggccgcccggtcctccgcgagttctcccactgccccgcgccggccaagagcctgctccaccgcttcggcgatctcgtcggcctcgtcaccggcgccgcgctcaccgacaaccccaacagcgccgtgctgccgctcggcgacggccgggtgatgtgcctcaccgagaccaccaagagctccgtcctcatcgacccggacacgctcgagacggtgggcaggttccggtacacggacaggctgggtggcatggtgcagtcggcgcacccgatcgtgaccgacacggagttcctgacgctgctgccggacctcgtccgtccgggccacctcgtcgtgaggatggaggccgggagcaacgagaggaaggtgatcgggagaatggactgccgcggcgggccgtcgcccgggtggctgcactcgttcgccgtcacggagaagtacgccgtcgtgccggagatgccgctccggtactcctccgccagcctgctcgcctccgagctcgccccgttctacgccttcgactgggtcccggcgtccggcagctacatgcacgtcatgtgcaagtccaccggcaagaccgtggcgagcgtggaggtgcctcctttcatggcgatccacttcatcaacgcatacgaggaggaaggcgacgaggccgccgtcgttgtcgactgctgtgagcactacggtgaccctgccatcatcgagacactcgtcctcagtagactgagattgttaaggggcaaggacgttttacctaacgccagggtggggcggttcaggatcccgctggatgggagcccgttcggcgaacttgagacggcgctggacccggaggagcacgggcgggggatggacatgtgcagcatcaacccggcgcgcctcggcaggaagtaccagtatgcctacgcgtgcggcgcgcgtcgcccgtgcaacttccccaacacgctcaccaagatcgacctggtggagaagaaggccaagagctggcacgaggagggctccgtgccgtccgagcctttcttcgtcgcgaggccgggagccaccgacgaagacgatggagtggtgatatctattgtaagctccgacgatggcgaagggtacgcactggtgctagacgcgaccacgtttgaggagattgcgcgcgtcaggttcccctacggattgccctacggcttccatggctgctggatccctgcgacggaagagtga</cdnaseq>

Protein Sequence

<aaseq>MATSLTLIATPCTAPRSSSSFALAPRLPPRCSNATAARRRAVRA TTLQSDQEPAGSGDSGATTTKLSASTSVRQERWEGDLPIEGCLPPWLNGTYIRNGPGM WDVGEHAFHHLFDGYATLVRVSFRGGGGARATGAHRQIESEAYRAAVARGRPVLREFS HCPAPAKSLLHRFGDLVGLVTGAALTDNPNSAVLPLGDGRVMCLTETTKSSVLIDPDT LETVGRFRYTDRLGGMVQSAHPIVTDTEFLTLLPDLVRPGHLVVRMEAGSNERKVIGR MDCRGGPSPGWLHSFAVTEKYAVVPEMPLRYSSASLLASELAPFYAFDWVPASGSYMH VMCKSTGKTVASVEVPPFMAIHFINAYEEEGDEAAVVVDCCEHYGDPAIIETLVLSRL RLLRGKDVLPNARVGRFRIPLDGSPFGELETALDPEEHGRGMDMCSINPARLGRKYQY AYACGARRPCNFPNTLTKIDLVEKKAKSWHEEGSVPSEPFFVARPGATDEDDGVVISI VSSDDGEGYALVLDATTFEEIARVRFPYGLPYGFHGCWIPATEE</aaseq>

Gene Sequence

<dnaseqindica>2291..2442#1756..2048#1237..1421#392..1147#25..297#agccgccattcgtgcacaggcatcatggcgacctccctgaccctgatcgccacaccatgcacggctcctagatcatcctcgtccttcgcactcgctccacggctgccgcctcgttgcagcaacgcgactgcagcacgtcgccgcgccgtgagggcaaccacgctgcaatcggatcaggaacctgcaggatcaggagacagcggcgccacgacgacgaagctgtctgcctcgaccagcgtccgccaagaacgctgggaaggcgacctgcccatcgagggatgcctccctccttggctggtacgtactacgtgcatgcgtgctaattaatgtttccaccgatctgtacgtacgtacgtgttgatcgatgcgtacgtgtgattgcgctgtgcagaatggcacgtacatcaggaacgggccggggatgtgggacgtcggggagcacgcgttccaccacctgttcgacggctacgcgacgctcgtccgcgtctccttccgcggcgggggtggtgcgcgcgccacgggggcgcaccggcagatcgagtcggaggcgtacagggccgccgtggcgcgcggccgcccggtcctccgcgagttctcccactgccccgcgccggccaagagcctgctccaccgcttcggcgatctcgtcggcctcgtcaccggcgccgcgctcaccgacaaccccaacagcgccgtgctgccgctcggcgacggccgggtgatgtgcctcaccgagaccaccaagagctccgtcctcatcgacccggacacgctcgagacggtgggcaggttccggtacacggacaggctgggtggcatggtgcagtcggcgcacccgatcgtgaccgacacggagttcctgacgctgctgccggacctcgtccgtccgggccacctcgtcgtgaggatggaggccgggagcaacgagaggaaggtgatcgggagaatggactgccgcggcgggccgtcgcccgggtggctgcactcgttcgccgtcacggagaagtacgccgtcgtgccggagatgccgctccggtactcctccgccagcctgctcgcctccgagctcgccccgttctacgccttcgactgggtcccggcgtccggcagctacatgcacgtcatgtgcaagtccaccggcaagaccgtacgtaattagttaagctgcaaagatcttgattttgtggcctgcagatgttctgtttttttggtttgatttcttgtggccgaattaaggtggcgagcgtggaggtgcctcctttcatggcgatccacttcatcaacgcatacgaggaggaaggcgacgaggccgccgtcgttgtcgactgctgtgagcactacggtgaccctgccatcatcgagacactcgtcctcagtagactgagattgttaaggggcaaggacgttttacctaacgccaggtacgtggtgtacatgatgctgcacacctgctgatagattgtgacttgactacttgaccaacaaaaatcacaaaacgtcacgtaaggtcgtacaaacttcctgaataaagtcataaacggtatcctttttataaaaaaaaattctatagaaaatttgttttaaaattcatattaatatggttttttaggtttaaaataattaacactaattaattatatgctaatggcgctcaacttattttgcatatctttttaattttattctttttcccggtctcctctcaaacactccactacatcgaaaagattaacacaaaacacttggtgatggcagggtggggcggttcaggatcccgctggatgggagcccgttcggcgaacttgagacggcgctggacccggaggagcacgggcgggggatggacatgtgcagcatcaacccggcgcgcctcggcaggaagtaccagtatgcctacgcgtgcggcgcgcgtcgcccgtgcaacttccccaacacgctcaccaagatcgacctggtggagaagaaggccaagagctggcacgaggagggctccgtgccgtccgagcctttcttcgtcgcgaggccgggagccaccgacgaagacgatggtgagctttcttaattcgattttgctatatatttatagataaaaatttgccaaatacaaatataatataatattattgtaactatatttgtaattaatgcgtacccttctaataaatttttagaagaaaatttatatatagccagccagttccaaattagtttgtgttaaaactttggctaaatttgttactccgtacgtaacaaggcatcgtcatgtatgcggcttgatctctgcatgcaggagtggtgatatctattgtaagctccgacgatggcgaagggtacgcactggtgctagacgcgaccacgtttgaggagattgcgcgcgtcaggttcccctacggattgccctacggcttccatggctgctggatccctgcgacggaagagtgactgagaaggaaaaacccgtatgaatatctgtagccgagaagactaggatcatatgtatgagcatccatgtaactcgtggggatttttattttaagcactactgg</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0566500, RefSeq:Os01g0566500