Os01g0566900

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Revision as of 04:45, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0566900| Description = 3'-5' exonuclease domain containing protein| Version = NM_001049900.1 GI:115437721 GeneID:4326337| Length = 5181 bp|...")
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Gene Name

Os01g0566900

Description

3'-5' exonuclease domain containing protein

Version

NM_001049900.1 GI:115437721 GeneID:4326337

Length

5181 bp

Definition

Oryza sativa Japonica Group Os01g0566900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:23355847..23361027

Sequence Coding Region

23356012..23356086,23356921..23356963,23357060..23357189,23357547..23357763,23357937..23357983
,23358867..23358963,23359372..23359422,23359523..23359654,23360080..23360211

Expression

GEO Profiles:Os01g0566900

Genome Context

<gbrowseImage1> name=NC_008394:23355847..23361027 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:23355847..23361027 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgctggttgttactaaacctggtcaactcccagttgagtttcttgaaccctctgctgcccagaaactggtgattggatttgattgtgaaggcgtagacctttgccgccatggtgctctctgtatcatgcagattgcatttcctgacgctgtttacttagttgatgctattgagggtgggaaagaacttattgaagcttgcaaaccagcacttgaatcagaatatgtcaccaaagttattcatgactgcaaaagggacagtgaggctctgtatttccagtttggcataaaattgcataatgtgatggatacacagatcgcttattctctgttagaggagcaggaagggaaaaagagaggatacgatgagtacatatcttttgtcagcctccttgctgatccccgatattgtggaatggcatatcctgaaaaggaagaagtccgtacccttctaaggcaggaccctaacttttggacgcataggcctttatctgaaatgatgattcgagcagccacagatgatgtccgcttccttctcagtatacatgagaaaatgatggagaagttaagcaaagtatctttatggcgtctgtcagttcgcagtgagctatactgcaggtgcttttgcataaatgacaacaagtatgcggattggccacctcttccaactgtccctgatgaaattgaacctgatgtttatgttcctgaggtggatatcctgtcagtcttggatgtgcctcctggcaaaatggggcgtgttattggcagaaaaggatcatcaataatggaagtgaaagcatcttgcaatgttgaaatccatattggtggtgcaaagggacctccagacagggtattcatcattggaccagtgcaggaagtcagaaaagctgaggctatcctccgaggccgcatgctggagttctag</cdnaseq>

Protein Sequence

<aaseq>MLVVTKPGQLPVEFLEPSAAQKLVIGFDCEGVDLCRHGALCIMQ IAFPDAVYLVDAIEGGKELIEACKPALESEYVTKVIHDCKRDSEALYFQFGIKLHNVM DTQIAYSLLEEQEGKKRGYDEYISFVSLLADPRYCGMAYPEKEEVRTLLRQDPNFWTH RPLSEMMIRAATDDVRFLLSIHEKMMEKLSKVSLWRLSVRSELYCRCFCINDNKYADW PPLPTVPDEIEPDVYVPEVDILSVLDVPPGKMGRVIGRKGSSIMEVKASCNVEIHIGG AKGPPDRVFIIGPVQEVRKAEAILRGRMLEF</aaseq>

Gene Sequence

<dnaseqindica>4942..5016#4065..4107#3839..3968#3265..3481#3045..3091#2065..2161#1606..1656#1374..1505#817..948#aggcgtaaaagaaagaaaacctcccgtctctcgtctcctccgccgccaagacgagtcgcggctgaacaggggaggggcgccgcaatctccatctggcgagcagagcaggggaggggaggggaggggatcctggtgagcatccatccacatcctctttctgattcatctctctcccccaccgccactacttttgtctggaatttgctcgcgttcgttcgtttcgttaaccctagcttctcttctagatctggatgaagctcttctcttaatttcagagccttaaaccttagtactacaagtaacagtttgtttgttcccccaaacccccatgtcccaagttggatccgcccctgttaagactattctgatgttcttgagccgcttactggcttatgcatgatccttatgttattagtcactccatctagcttgctatgtgctgctcagtgtcttttacctcatgcgaaatgtggtcagaattgctttttattttgagatagttcagtcccggatttggactgtaaccctaacatcaaagggtcttgattttcagtattttccactttttttagcttttgttcaccatgtaaattgaggcgtgtcatcatctagcatgatattaaccattttctagcatgccctgtactgattggagtctttcaactcatgaaaagaattatttcagttctatttcctcttattatatggttcttttggttaagatgtaccgattaagagaaactagcttgcttaccttgtcctaactgagtgagttcttctggtaatgattcagagctgctatcccctcccctgcccatgctggttgttactaaacctggtcaactcccagttgagtttcttgaaccctctgctgcccagaaactggtgattggatttgattgtgaaggcgtagacctttgccgccatggtgctctctgtatcatgcaggtgagttcaaatgaagcttatgaagcatgaagtatgttcatgcgatcttctgtttcataatagtggtcctttcaaactattttgtatctaccatctcctaatagtggtccttccatcctgcaaagtgtcagccatgccctacataaggaagttcactatcgcttatatgcttttagattcctttttcacgatcttccaaactaggaaaatcattcgcaatggtaattgcttgttgtcttgcctcacctttgagtactatgtattgatatgcgccttttagatgcaaccactacctcctgttatttccgtgtattgtgtacacatagattcctattgagcttatttttaatttcgacatattgtttggtccttgctgatgtaatgatgaatacctttttattggtccatttggatttttttttcagattgcatttcctgacgctgtttacttagttgatgctattgagggtgggaaagaacttattgaagcttgcaaaccagcacttgaatcagaatatgtcaccaaagttattcatgactgcaaaagggacagtgaggtgcctaacccacaactctgaagttattgtagtgcattattatttttttctgttctagaagattgatcctgactaatggttgagagttacgatattgcaggctctgtatttccagtttggcataaaattgcataatgtgatggatacacaggtaatcagcatatgcatgtggtgtgcactatagtggcatgcttactgactaaatttatagttaactcggtactttctctgttgtttacatgtaaattattatctgctgctttcttaatgatgttcatatgcatgtggtatgcgccacagtggcatgcttactgactaaatttataggcatctcggtaatttttctgttgtgcacatgcaaattataatctgctgcttttctaattctattcatcaaaactgaaccattaccaatttatcatgagcttaggaccattaaccctgtacagagctgaaataattgcattatcattcgccattgtagatatgtaatgcgaattggcagctatttgtatggtagtttctatttggagggacttcaattatcactcttgtgcagatcgcttattctctgttagaggagcaggaagggaaaaagagaggatacgatgagtacatatcttttgtcagcctccttgctgatccccgatattgtggtacttactatactgaattagtttaaaccattgagttcctttgaatcgaaaagacgaaactgctgtgcatgttttgttccttctgatctgttctttcacagtatactgtatacttatataagctccccttggttgtagtttaccttgtgctggcatgcaagctctttcttttccttatacatattatctgctcctacgttttacatttatatattcttaagcattgtcgccataccacccttttttttttcctttagaaaaaaaaaaggaagtgttgcctcagagtttttttttttgtattcatgaagttccacttgattgtgatcttttggtgccaggttcttattttgaactataagttaatgtaatgcaacacattatgcttagtgttactgctagtgctttaactttgatgtatatgccttacatatccaagctgctgcaagttttgtccaagcgtaacttctatatgacatggttatttcagtcatgaatcgtttcaacgtggacattctgccttattatatgttcatttaatgtgtgtatgattaggccttaggctgcaacctatcagttcacccatgaatattagaacacctgggatgattgctccctctctcttatacagttttctattacttctgtaattctttaaattaatactttgcaaatatgttgaaagccttttggtaggttgtgcattgaaactacaaaatgtactgtggttgcatcacagcagtttgctgcttctgtcaaacatttttatcaattaattgttatgctctttaagctacctagatgttgacaaagtgtatgaaggaccgcagcacattttcttgtgttctgtttgattgatcatatggtgtgatactgctttgtgtaggaatggcatatcctgaaaaggaagaagtccgtacccttctaaggcaggttagcaatatgtgacgggaattgtagaactttgttagacagaaagttattgtgctgaagatctgaaatcttatgttactctctattttatgataatgcttggctatccgatgcttcactgtgctgatatcctggtttcttgacaactgacaagtgcttacatcggttttcaggaccctaacttttggacgcataggcctttatctgaaatgatgattcgagcagccacagatgatgtccgcttccttctcagtatacatgagaaaatgatggagaagttaagcaaagtatctttatggcgtctgtcagttcgcagtgagctatactgcaggtgcttttgcataaatgacaacaagtatgcggattggccacctcttccaactgtccctggtcagtgcatctaaatgtgtttttctccccatttgttcatattgcaaatccatttagttatcatatgctaaaaggtccattttgcctatagtttcttcagatactattgaaacttgatagtcagaatgacaattttgaaatgcaagtcagggttgctttatgggctggcatttttaggtgaagtgttagaaagtaacttggaccttggcaagcaagtatagtcttaaatataagcatcactaacacatcatggatgtctttcaattgtattctttaattcttcaagtttattttatattcaactttgtaaaaccggacatttgtgctaaactgctgattgatatttgtgtcatacagatgaaattgaacctgatgtttatgttcctgaggtggatatcctgtcagtcttggatgtgcctcctggcaaaatggggcgtgttattggcagaaaaggatcatcaataatggaagtgaaagcatcttgcaagtaaacatactaagtctgattttgtagatgttctctaaatctatattattctgtgaagctttatttattccttttcatttcaacgcatatttgcagtgttgaaatccatattggtggtgcaaagggacctccagacagggtaagtttcctagggcctttgtctgttgtaattaatatattcaattggttactggtcagtccacactccacagtcatgcttcactgacttactggctccatctatcgacttgaacaaattaatactactaataactaaagttcttgtaattctacaaatggaaaaagactaccaaataggtagtcattgaaacatattattttgaagtgccaggctcagcacattgttgtcctaacaaacttgttaagtttagagtgggtttcatataatcacaaacatttagcgggactgggctcctaacatgtatggctctaataaaaagttgtttctgatttattttggcacaagtcttgctgctcttttttttttatttacattttgccctatgaggttccattccttgtctttactacctgtaagtctgtaacattctaagcagacttatctcaaggtgatcactactgaacagatatatctatcttctagctaaggtgatcagtaccatagtaggcttgcgtgggctagggctggatgcatatgaaaattgtgtgcagcctatatatgtcacaatcagtaccctagctggactgatccgtgaggcaacacgtagtgagaaagcaattgctgctagtaaatgaatagcgagatcacattaggtggtccttctccctagcacatgaaaagacggtggaaaaaaggcgatacatacccaaacactgaatagtcttccattctcttctttgaataaccttctacattatgcagacaaaccaatcgagcatatacatatttttctaatttccactgatcctcatccaatttcccttaattcaggtattcatcattggaccagtgcaggaagtcagaaaagctgaggctatcctccgaggccgcatgctggagttctagagcaacaaccttttgtgataccccggcttcaaactgctctcctcaatatgtcagtcttgtgtgcacaaaagggatatacagaaatgcatgtggtactgggtgcctccaggatctctgatcctagacatgataaaacagaataaaaagaattgaaaggttacctcc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0566900, RefSeq:Os01g0566900