Os10g0493600

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Revision as of 08:43, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0493600| Description = Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase) (Alpha-D- galactoside galactohydrolase)| Version = NM_0010714...")
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Gene Name

Os10g0493600

Description

Alpha-galactosidase precursor (EC 3.2.1.22) (Melibiase) (Alpha-D- galactoside galactohydrolase)

Version

NM_001071474.2 GI:297610711 GeneID:4348988

Length

7624 bp

Definition

Oryza sativa Japonica Group Os10g0493600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:19190491..19198114

Sequence Coding Region

19190545..19190744,19192770..19192828,19195409..19195465,19195627..19195661,19195999..19196102
,19196252..19196327,19196427..19196485,19196565..19196630,19196720..19196803
,19196885..19196949,19197040..19197122,19197214..19197302,19197387..19197438
,19197548..19197688,19197777..19197860

Expression

GEO Profiles:Os10g0493600

Genome Context

<gbrowseImage1> name=NC_008403:19190491..19198114 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:19190491..19198114 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgcgcgcctcgagctcctcgtctccgccgtcgccgcgcctcctcctcctcctcctggtggcggtggcggcgacgctgctccccgaggcggcggcgctgggcaacttcacggcggagtcccgcggcgcgcggtggcggtctcgccgcgcgcggcgccgcgccttcgagaacggcctcggccgcacgccgcagatggggtggaatagctggaaccacttctactgcgggatcaacgagcagatcatcagggaaacagctgatgcattggtcaacactggtctggcgaaattggggtaccagtatgtgaatatagatgattgctgggcagaatatagtagggattcccagggtaactttgtgccaaataggcagacgttcccctctggtatcaaggcactggcagattatgtgcatgcaaaagggctgaagcttggcatctacagcgatgccgggtcacaaacatgcagtaacaaaatgccaggatcacttgatcatgaagagcaagatgtcaagaccttcgcgtcttggggagttgattatctgaagtatgacaactgcaatgatgctggcaggagtgtcatggaaagatacactagaatgagcaatgccatgaagacctatggaaagaatatcttcttctcactctgtgaatgggggaaagaaaatcctgctacatgggcaggccgcatgggtaacagctggagaacaactggcgacatcgccgacaactggggcagtatgacatctcgtgcagacgaaaatgaccaatgggctgcctatgctggacctggtggatggaatgatcctgacatgcttgaagtgggaaatggtgggatgtctgaagctgagtaccggtcacacttcagtatctgggcactagcaaaggctcctcttttgatcggatgcgatgtgcgctcaatgagccagcagacgaagaacatactcagcaactcggaggtgatcgctgtcaaccaagatagtctaggtgtccaaggaaagaaagtacaatctgacaacggattggaggtttgggccgggccactcagcaacaacaggaaggctgtggtgctctggaacaggcagtcataccaggcaaccatcactgcacattggtcgaacatcgggctcgctggatcggtcgcggtcactgctcgtgatctatgggcgcactcttcgttcgcggctcagggacagatatcagcatcggtggcgcctcatgactgcaagatgtatgtcttgacaccaaactag</cdnaseq>

Protein Sequence

<aaseq>MARASSSSSPPSPRLLLLLLVAVAATLLPEAAALGNFTAESRGA RWRSRRARRRAFENGLGRTPQMGWNSWNHFYCGINEQIIRETADALVNTGLAKLGYQY VNIDDCWAEYSRDSQGNFVPNRQTFPSGIKALADYVHAKGLKLGIYSDAGSQTCSNKM PGSLDHEEQDVKTFASWGVDYLKYDNCNDAGRSVMERYTRMSNAMKTYGKNIFFSLCE WGKENPATWAGRMGNSWRTTGDIADNWGSMTSRADENDQWAAYAGPGGWNDPDMLEVG NGGMSEAEYRSHFSIWALAKAPLLIGCDVRSMSQQTKNILSNSEVIAVNQDSLGVQGK KVQSDNGLEVWAGPLSNNRKAVVLWNRQSYQATITAHWSNIGLAGSVAVTARDLWAHS SFAAQGQISASVAPHDCKMYVLTPN</aaseq>

Gene Sequence

<dnaseqindica>55..254#2280..2338#4919..4975#5137..5171#5509..5612#5762..5837#5937..5995#6075..6140#6230..6313#6395..6459#6550..6632#6724..6812#6897..6948#7058..7198#7287..7370#acttctccctccgaatttaacgcggagcgaagctcagagcagagcacgccggccatggcgcgcgcctcgagctcctcgtctccgccgtcgccgcgcctcctcctcctcctcctggtggcggtggcggcgacgctgctccccgaggcggcggcgctgggcaacttcacggcggagtcccgcggcgcgcggtggcggtctcgccgcgcgcggcgccgcgccttcgagaacggcctcggccgcacgccgcagatggggtaccgtctctctctccctctctctttatttttctcattcgcaactcgtgaccgcttatactgtataaattttggtacatttttcttttgtgttaccaaattttggcagacttttagatatgttcagtttgaaacgttccaaaattttggtgatggtgtttatgcgagatgaaactctgggagcttcaaaattttggtagagtaataacacgtttagtgaacagcaagcaaccgattatcacaatggaaaataaaaaagaaacagtaatcgcgtcatcttctagtcggattttttttgggggaggaaacggacatgtctctagcttgcagtggaagcgaaagcttcttctgctcttctctgcagtttctgaactctgaaactctgaactttaagctgcttttgtttgttcctttcttcgatgctttcctgcacggcaaaaaaactgacatcacacgcatgtggagtactacgcttccgttttccatttttttttatcctttgtttttgtgctcaattttgcgtttgtttatcgtgttcggcgatagattttctctctgttttttttattctgtcgatttgagacgtcagaagagtagctcgcgcgcacgcggacgcggtgggtgcatttcttttttctccgtttgtccaaaagatttctgttcttttctgcatgggaaagaagaaagaaaaactggtgctactgtacaatggactattgccatgttggagaccaatgttgctttctgtacgagcaaatgtttcgtcaggtacagggcactgtgtgaattttttttcacccggaaaagtggaaaactttcctgaattcaatggaaagcttaagagttctgtcatttgggttttttttttgtacatttaggttctgtcagactgtataaaagaaaaaaaaatcagacaatcctgttctctgtcaggctgcaagaacatccacaaggttaaccatcatcagattatcactttgagaaaaattgtagtaaggtttagactccactgcataaaaaatcttcagacaagggacaaccgagagaaagcgagcatgtccaccaaaaacaggcataaaaatttcctgcttttcatttggcttctgcttcttttgacgggcatatctatgctcttttcttttcttttcttttgcttgtcccttttagcctcttttcttgtgctgacatattcaactatgctgcctctattaaattctgtcacaattgaactggttttaccgtacatgtacttccatttcattgttctttacgcatcaggcagaatttccgcactttcttttaccacctactcattccctccaaaaaagacaaatctgggttttcgtgtccaacgtttgactgtctatcttatatatttttttataattaatatttttattgctgttagatgataaaacatgattaatactttatgcatgacttatctttttaatttttttataattttttcaaataagacggacggtcaaacgttgggcacggaaatccagggtttgtcttttttttgggatggacggagtactccctccgtccctccgtcccacttcgtcctcgtccaaattcgtattattaggatgtgtcatatcctctaacatattagagagtacttcatatgttccaaaatatcaaagtatttttatattatttagcaaatattgaaattaacaaaaacaactttgatgtccttcattaagcgagggatgattagggatgtgaggacattttagtagaaagaatttcgaatgggagataatccatacagcaagtagtactctaaattatgctagaaatgcttatatttttaaccagagggagttctttagagttcagacttcataatatgtcggtgttgtaaacaatactgctagtctttcagattcacgtgtgtaggcattagcagacagtggtacaaatgcatcaatggtcgtggttttgtcaagtaataaattaattaacaactgctgtgcgactgacgctgtctctcggtgtgtgtggctgtgttaggtggaatagctggaaccacttctactgcgggatcaacgagcagatcatcagggaaacaggtacacttgcttctgccactagtgctctcttctcaactcaacttatttctgcaacccatggcgtcacactttgatctctccagtacgccacgtaccgtgttttggtatttttctctatacacattgcattggttcccaatggacacggatcctctacagtattgctgttgttgacatgtatacctagtcatatatatcaatgacatctgcagcaggtgtagtactgcaaacaatccccgtcggtttccaatgtgcatcagcacatcaggaaccgaaaacttgcaacctcgtcagaaatctttccaatgaagcttagattatttttctaggagatgacttaatacgttgatttagtagtttttagttgggaggacactgtttttgaagttcttttttttttcaagaagtttagtagttctaaactatgcactaatttggaacatcttggaagcacaacacatagtggtggggttcggcgtagtgtggtgggtgtggtgtgtttggatgcatcaacgtcagcaacagcaggctacaaaaaacattcagagaaaaaaaaaaggttgccgtcggtgatgcgacttatctgaaattccccacgtacttttgtcataccctgcatcaaaacttccaagaaataataaaaaaaaggatcattcatcacaggctatgattaaagcaagttaacaaatgacacgtcatttgctactaatctagtagccgacctatacaatagttagatacatacagatacatactaacacctcataaggcttattaaagcttgtgttgcaacaggttaccgatctgtagcccgtcttttttcaagtcttgtctcttttctctaagaacacagcttaaatcttggtaactccgatggctatcacttcattatacttgctcttacaagttggtagtgtaataagagttgggtaaaagtaaacagccatgaattggggcggtgagatctcgagtcacccgagagacaacaatgcatctgttttggtatagctgcgagctgtacggccgcagggcgagacccttgtcggccggcacggattactacagctaggattaactgcagggatgagcttgagcttgcagatttacagcttgcaagcagcaggttttgcatggacccaagctagtactagcaatgcaaaggacagcgaccagattggctgcacctgcacactgcacacacacactgccatgctctctatctctcctgaccaaatctttattctttgggcaccagacgaatcagatctggttcagagatgccctgccccttttaactcttccaccatgcaacttgcctggacgactgaatttttagtcggcaatgttcagtaatcagtcacggcttgcttgcttgcttggccgatttgtttgttgctccagcatgctaggattgcttaagagtttcaggcagagcagcttcatgtgctagtgcagtgtgattaggagctttttgcagattgcagtagatagcatcctcccttggttatccaatcaatggctttttagtggatggaaagagcaaaagattccatgcatggagtagatagcttttgttttgttttgtttagaggagcaaggccacatgtgttgcaaaacattgtggcagaaatatggaaatgaaagggagagtgagagggtccatgttgaataagaccctttggccagaatgttcataggagctttaattaccatgttgataacggatgatgaggccccataaccaagcaatgctgatctccagaatgggtgaagacattttcactgattctgatctgcacaactggattatgttgaattaaatcattcatgtcgacagcttgtggagggcagatctctgaacaaatctagagtaaatgtcttagatcagatttttatgactgagtacacattaatcatctcatcagtcatccagtcaatcttggtggtccaaacaaaatcaattgacaatattgtcaccacagtctagtactactacaaagtatgtggttggtaatagatgaaaggaagtccatggaaatggggccctacaagcttggggtcagccatggattggtactgcctaactaccaaactctaaataagaggatggcagctgcagcctgcaggcaggcatgaaacctgctccacttggactcactccatttacatgtaaccatagttagtactagaaccactctctagctacttgtatagttgtatgttccagcttcctagtaggtggttatggacaaacacccgtgatgatcttagtgtcttatcagaataatcatggtactgatttggtctggtatcaaatttctgttacaaacattgttccttaatattgtcaatattatgcacatagtgttttttttttgctgggccggccaaaggaagaggctgatcaaatatcattaagatttgaaggagaatttgcaaagttacaagcatcgacagggaagcctgtcgaaccagacgccttttgagattttttgtactacagatttaatagaagctgtttttaataatgttgtgagcaactgagagttaaggctgatgtaattgtgttcctttcttcagctgatgcattggtcaacactggtctggcgaaattggggtaccagtatgtgaatataggtatgggcttttatctgatagaaactatgaacagtatttcatatgatacactagagtatggacacaaacattgttgatatattagcaaaagttaattcaattattttgtgatagaacagctagtaactcatgtctgtaatgttttccatctcttctttcagatgattgctgggcagaatatagtagggattcccaggtaaagagacaaaaatattctccataaagcaatgctatccaccgccataattttcagcacaattttaggatacaaatttgagaaccttgtctagtttgttgatgagcctgagaaattttagactggaaacaatcattaacaattacaatacacattaataagaaaacgtatgtactttctatcagtttaatgtgtcataactagaaattttatatgtgaaaaattctgcatggggggagaatgagcaattttaaaagatcaatgctttaaaattgtgtagaccaagctattgctgtcagttttgacaagttgtactgctctttttttcgcttctcagggtaactttgtgccaaataggcagacgttcccctctggtatcaaggcactggcagattatgtgcatgcaaaagggctgaagcttggcatctacagcgatgccgggtatgctagctttcagatttatcataatgacaaactactttgtactcatccagaagtaacttatgtcatcattagcctagatgaactaagaattttatcgaatataaactatcaacaaatctgaaactaatagcaagactgtatttcaggtcacaaacatgcagtaacaaaatgccaggatcacttgatcatgaagagcaagatgtcaagaccttcgcgtcttgggtaaacctcgactcttttacctgtctggttatacccaatcaacattaaacactgaaactattattctggtgttcttaattcttgacctctatgttccagggagttgattatctgaagtatgacaactgcaatgatgctggcaggagtgtcatggaaaggtaaggagacaaaacatctcaaactgtcagctttatgcatcagattgctgatgagcaactgttttcatgtttaatgcagatacactagaatgagcaatgccatgaagacctatggaaagaatatcttcttctcactctgtgaatggtgagtttactctctgtaacatttagggctaggtcgaaggaacatgaagcattgctgattcactccactgtgtttttttttctgtatagggggaaagaaaatcctgctacatgggcaggccgcatgggtaacagctggagaacaactggcgacatcgccgacaactggggcaggttctactcatcctctctttaaccctgtttacatagttcttgagtttttcagtactgatcgtaattgccctgttatttcagtatgacatctcgtgcagacgaaaatgaccaatgggctgcctatgctggacctggtggatggaatggtaagaacttgagatgtatctgttcctaggttgcttaaccatttgagagcttcaaaatgatcaacatatgtttctgctgtgcaatatcagatcctgacatgcttgaagtgggaaatggtgggatgtctgaagctgagtaccggtcacacttcagtatctgggcactagcaaaggtaccatagcatgttctatgtactaataattttgctgcaatgttgaacttctttgcatttcctcactgcaagttttgcttgaattgttcaggctcctcttttgatcggatgcgatgtgcgctcaatgagccagcagacgaagaacatactcagcaactcggaggtgatcgctgtcaaccaaggcaagccttctcagtttcacatgcttagatttagccatacctcttggatatttcaccatactcataatgtaactctctgaacagatagtctaggtgtccaaggaaagaaagtacaatctgacaacggattggaggtatgccttcaatggcttccaaatttgcagtttctcattgtcccataagccttggcatgatcatgactaactctgaagctgacaatactttgtgtaaatttgtcggtaggtttgggccgggccactcagcaacaacaggaaggctgtggtgctctggaacaggcagtcataccaggcaaccatcactgcacattggtcgaacatcgggctcgctggatcggtcgcggtcactgctcgtgatctatgggcggtaaagcctttgctttcttcagagctcaaagtagaacatcttctcttcagaattcagagttcataacaaatttctgtcaattgtgcagcactcttcgttcgcggctcagggacagatatcagcatcggtggcgcctcatgactgcaagatgtatgtcttgacaccaaactagtcagcaaagaaaagcagcacaggttagtacgtgtccggcgaatacagctaaattgatcaggattcaggaagaaggtttgcaatttgcaaggattggtagagctggaaatgggatgccatttggttatgtatgtagaaataagctgtaagcctgtaagcgtatatgtaatcagccgtcaaatgctggcgagtgtatttctgaagtttgcaacgaaagttgcagcaataaaaatacaaaaagaaggctttcctgcc</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0493600, RefSeq:Os10g0493600