Os01g0598900

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Revision as of 04:47, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0598900| Description = PP-loop domain containing protein| Version = NM_001185520.1 GI:297720174 GeneID:9269998| Length = 7522 bp| Definiti...")
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Gene Name

Os01g0598900

Description

PP-loop domain containing protein

Version

NM_001185520.1 GI:297720174 GeneID:9269998

Length

7522 bp

Definition

Oryza sativa Japonica Group Os01g0598900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:25187440..25194961

Sequence Coding Region

25187440..25187484,25187529..25187640,25187803..25187869,25188174..25188301,25188373..25188485
,25188562..25188707,25189154..25189260,25189402..25189608,25191613..25191864
,25192438..25192525,25194649..25194961

Expression

GEO Profiles:Os01g0598900

Genome Context

<gbrowseImage1> name=NC_008394:25187440..25194961 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:25187440..25194961 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atggcgggcatgctcgtcggcttcacggacttctcgacctccatggccccctccttcctgttgtccttgttgctgtcgtcttcctcgtcctccagcatggcggtgcagatgggagagaaggcagcggcgcgcgtgggcgtcgggcggcggcggcggcggcgtgcgcatgcgttggttggcggcgatgatgcagatgggggtaaaggcagtggcgcggcggcgcagattggggagaaggcagcggcgcgtgcgtcgggcgacggcggcgacgtgcgcgtgcgttgctgtcgacggtgccacagatggggggaaggggagggggctcaggggctgaccacctcgcagctcggggctccggtctacgcctcccgcccttacgccgcgtgcccgcgagactggagcacctgctcttgcgccgccgatgccctgctgtggcggcgccaactccttgcccctgccgatgctgacgccctcctctcttcctctcttccccatcttgaggacgacaaccgatgggagaagggcagcacacggcgggtgccggcggccagtgagagaagagtcgagcgatgtgcggcggcggtgtcaagcgggcccttgagcatgcggtcgtcgtcctcgcgcacggagaaggacgcgacgtcgcactcctgctgcaaaatcctttgtccgtcacaattgcccatggactctgctgtcgatggcccgagacaacctccggctagggcgggaagccgcctctgcacacgctgcagcgagcggaaggctgccctcaagcgtcccaaaaccctagagcagttgtgcctctatgcccctcacattttccgtgtagtttgtcctgatgtttcgagacaatccagggaatgcttctacattgtctttgaggatgagatccatcagactattgttgagaataatttgtttaaacctggtgatcgtgtggccattggagcttctggtggtaaagttgctgatacaaccgacttattgcagtatggcctgccattgaaaataatttcttataaggacctctatggctggacaatggatgatattgtgaaagcaattggcctaaaaaataattgtaccttttgtggtgtttttcgacgtcaggcactggaccgaggtgctgctctcttaaaagttgacaagattgtgactggacataatgctgatgacattgcagaaactgtgttattgaatatattacgtggtgatattgcacggttaagtagatgtacctttataactactggcgaagatgggccaatcccaagatgcaagcctttcaaatacacctatgagaaggagattgttatatatccttattatgcaatatcccatatattctcatgcatatattcaccaaatgcataccgtggatttgctcgcgaatttattaaagatctggaaaggatgagacctagagctatactggacatcataaaatcaggtgagaattttaggatctccacaacaacaaggatgccagagcaaggaacatgtgaacgttgtggctacatttctagtcaggacctcttccttgctgatttactcaatgagactgatgctaattag</cdnaseq>

Protein Sequence

<aaseq>MAGMLVGFTDFSTSMAPSFLLSLLLSSSSSSSMAVQMGEKAAAR VGVGRRRRRRAHALVGGDDADGGKGSGAAAQIGEKAAARASGDGGDVRVRCCRRCHRW GEGEGAQGLTTSQLGAPVYASRPYAACPRDWSTCSCAADALLWRRQLLAPADADALLS SSLPHLEDDNRWEKGSTRRVPAASERRVERCAAAVSSGPLSMRSSSSRTEKDATSHSC CKILCPSQLPMDSAVDGPRQPPARAGSRLCTRCSERKAALKRPKTLEQLCLYAPHIFR VVCPDVSRQSRECFYIVFEDEIHQTIVENNLFKPGDRVAIGASGGKVADTTDLLQYGL PLKIISYKDLYGWTMDDIVKAIGLKNNCTFCGVFRRQALDRGAALLKVDKIVTGHNAD DIAETVLLNILRGDIARLSRCTFITTGEDGPIPRCKPFKYTYEKEIVIYPYYAISHIF SCIYSPNAYRGFAREFIKDLERMRPRAILDIIKSGENFRISTTTRMPEQGTCERCGYI SSQDLFLADLLNETDAN</aaseq>

Gene Sequence

<dnaseqindica>7478..7522#7322..7433#7093..7159#6661..6788#6477..6589#6255..6400#5702..5808#5354..5560#3098..3349#2437..2524#1..313#atggcgggcatgctcgtcggcttcacggacttctcgacctccatggccccctccttcctgttgtccttgttgctgtcgtcttcctcgtcctccagcatggcggtgcagatgggagagaaggcagcggcgcgcgtgggcgtcgggcggcggcggcggcggcgtgcgcatgcgttggttggcggcgatgatgcagatgggggtaaaggcagtggcgcggcggcgcagattggggagaaggcagcggcgcgtgcgtcgggcgacggcggcgacgtgcgcgtgcgttgctgtcgacggtgccacagatggggggaaggtagcggcgtgcgcgtgcgtcgggtgacggcggtgacgtgcgcgtgcgtcgctggcggtagtgccgcagatggggggaaaggcagcggcacacgcgttcgtcgggcggcggcgccggcgtggtcgccgctgtcttcgcccttctgtccttgctcgttgtggtcgcagacgacagagagaacatgtggttggacgtccaggggcaaaaccgtccaaaaaaattatttcggtgaaaaatcttttgcaaatgcaacagacactgaaaatggcattcgagcgaatctcattttaacgatggcattccagcgaagccgctttttaaggatggcagagatgcaattctctaaaacttaaggtgatatttggaatggtttatacaattttctctaaaaacaataaggtaacgagggagagtcggccacgtgaatgctctcatttccaggaggtagcaaaagtgcacatgaaacatgctaatggtattttggaccactattatttctaacattaagctactacatactcctactaaactggtaccaccaaatatatctaaggcggaaggccaaacttcactctaactccaaaacaagacatgccttgccctcatttctcatctgagagcatttcgactcaaaacaatttacaaacgcgtatcgttaatgcaaaacaaaaagttgcttatatagtatgaaaaaactaaaatgtgcggaaagcaaagcgaatcattacatagtaacaactcgtaggtttcgatttcctcttatttttgaattttttggctcctcaaaatagctgtcatgttttttttgcaacaagatttctcaattgggccagcagaatcagcgacacgcggttcgatggtcagctgctctatttctcattggtttgtgcaacgattcagtaaccgggcataagcagttgaggcatacatgtgtgcaatgcaacctcacacatggttttttttataaagaccttaatactctaaaaatctcgaagcaaccctttaaccgtttttaccctgttgtaaattttgtaaagccctatatatttttgagaaatataacacgaagaagacaaggtttcgtttttagaggtagcattgtaataccaagaagcataagggtttttttggcaaaaatatcatcccaatctgatgcagtcccctctcgtatcatctgaacttccgcctcctttgccgccgctttccgcttctgacgccgcactcgctccagccgcggagccgcctcttcttgctgttctccacctgtggtgaaggaggccaggtttgccgcccagccacccgcttcgccgctcgccctcccccacctcctgccaccaccctccccggtagcgcctcctgccgttgtccccacctcgcgcagatcgggggaagtggacctcggtgtggatgaggtcagcggcgctgaggagctcgcggcccttgagtcagcgtggggacgactctacttaacaagttaatacgtctgctatcgtgtgcggcgtgtcgccgcgcggacccttctagtgctattggagtgccatgtcgtgctaagggataaaccaaatcagaggtagggtgtgcgtgtgttccttcataaatataaaggtggacttatttttacatcctcttcataatacgtgatagacagatgccacggaacacaagcatgtaccatggctatatatgtgcaatcatgatgtagcactctttgaacactagcagttgccacggaagaattagcactttgagatgtttcttcaccggaagacaagtttataactaagggttttttttttaacgggcaagataaaaatttcaactagatttttcacttttgcaaatcttttaactttacctatatcagtggtgtagttgaaaagggagatgcatcaactctgaactagagaaatttttaggatacaactgaactagcttaaccaaattttccttgtttgactccttcagttgatttagtgacttcaaacctaccgttttcttttttatttttcaaatttcaagctctacaactaattcagtgactacctcagtttaaaacaaaacaaaaggccgattggttgggagatttgggaagaaactattaggtggtgctttggtctgtggaggggagggggctcaggggctgaccacctcgcagctcggggctccggtctacgcctcccgcccttacgccgcgtgcccgcgagactggaggtatctgagtgcggcgaggtcggcgcttcggccgttcggcgtcgctgcgtcgggcgcccggagggtgtcgtggttcgggggacggagggtggctactcacctagaccgatggagcctaaagaaatctagggttacatgctattttgttgggcctattttatgggcctgcgactttgcagttggccaatgcatattggaataagtttactttagggtcctcaattgctcgtcgagcctaaaattcgtccaccgcaaaaccagatacatcgcatcccccaactaaaggtaaagtagcaatggcggtgggcggccagcgaggagggccgcggcggtctgtaacgacagaggaggtgaggggggagtgtcggggaggagggaggtgaggggggagtgtcggggaggagggaggcgagggagctcgagctcaccatcccctccgcggtacggcaacaacggcgaggagggggccaggagtggcgttggcaacggtgcgggagtcgaaaattgaggagaatcgctgttgagatttaggagaactgccacccatgctttgtggcctcgcgtcacacgcagcacctgctcttgcgccgccgatgccctgctgtggcggcgccaactccttgcccctgccgatgctgacgccctcctctcttcctctcttccccatcttgaggacgacaaccgatgggagaagggcagcacacggcgggtgccggcggccagtgagagaagagtcgagcgatgtgcggcggcggtgtcaagcgggcccttgagcatgcggtcgtcgtcctcgcgcacggagaaggacgcgacgtcgcactcctggtaaaggagcttgtacgacgaaacccatcccctgctcatgcatccctcctcgtcccaacctcccttgggtgtgctgctgctaccctcgctcacgaaggacgcagcgacgtgctcatgcaggggtggagctcgtgcggcgggacccagcccctgtcctcgttgccctcctcgtccccgttccccctatcagcgggagagtagttgcacggcgcatggcaggcgtcacggaggactccaacctaagggtccgctcgacgccgccgtcacgcgccgctaagttctgcttccgccggcatggtgatggggacaagaaggatcgcgggagcaggggatggatcccggcgcacgagttccttctttgtcgggagtgcgccgccgcgtcctttgtgtgtgagggtggcggccgcttgctcaaggcccctctcgtcgtcgcgcgccgcttgactcctttctcactggccgccggcgcccgctgcgtgcttccttctcccgttggctgtcgctctcaagatggggaaaagaggagggtgttgacgggggcacggagttggcgccgctgcaggaggagggcgtcggcggcgcgggagtaggcgctgcatgtgacgcgaggccacaaagcgcgggtggtggttgttcttcatcccgacgatggttctccatcccaatgacaattctcctccatcttcaactctcgcaccgctgccaacgctgctcctggccctctcctcgccgttgccgccttaccgcgaaggggatggcgagcttgagctcgctggctccctcgccttcctcctccccgccactcctgctcacctcctctgccatcacggaccaccacggccctcctcgctggctgcccaccaccactgctaccttaactaagttggggaatgcgatgtatctagttttgcggtccagtgatgaatttcaggctcgacgacaaattgagagacctaaattaaatttattccaatatgcctcggctaactgcaaagtcgcaggcccataaaataggctcaacaagacagcatgtaaccttagattcctttgggctccagcggtctagctgagtagctgccctcagtcccccgaaccacgacgccgcccggacgcccgacgcggcgaccccgaacggccgaagtgtcgacctcgccgcactctgtcaccttgcgggctctcggcgaaaaggcgggagacggaggccagagccctaagttgcgaggtggttagcccctgagccctctttcctccacggaccaagccaccacctggcaagtttcttcttaaatctcccaaccaatcttccatttgttttgttttaaactgagtagtcattgaattagttgtagagctagaaatttgaaaaatgaaaaagaagacaataggtttgaagtcgctaaatcaacccaatgtgtcactgaatcatttgctgtttaggacaagggaaatttggttaaacttgtttagttgtatcctaaaaatttctctaatttagagttgatgtatctcccatttcaactccaccactgatatatgtaaagataaaaggttttcaaaaatgtaaaatctggttgaactttatatcttgtttgttgaaacgaagaaacaccttagttatgaacttatcttccggtgaaaaaacatctcaaattcgtgctaattcttccagtggcaattgcagtgtttaaagagtgttatcttcgctgaatcacgtgaagaataagctatgaaaaagaataggagtgcaatatatgaaattttgaagattgcatacctacctttcttagcgtggctttttgtgcaaattaaggacggtcacatcacttctcgctttcgaaaccatggcacaaagttaaattgtacttttcttcaagtgttatgtaattcattgaaactacgtgagacatctccagaatgaactattagtgctactatgtgtactctaaaacatctcagttttgtttcttttcatatgaaacagttcttttaactcattatattcagctgcaaaatcctttgtccgtcacaattgcccatggactctgctgtcgatggcccgagacaacctccggctagggcgggaagccgcctctgcacacgctgcagcgagcggaaggctgccctcaagcgtcccaaaaccctagagcagttgtgcctctatgcccctcacattttccgtgtagtttgtcctgatgtttcgagacaatccaggtgcaataatttagctctagtagcttaagattaacagacattttttaatgtttttgtgaaagtaggaatactgtgaaatgcaaaaccgtttttgtttggcagttgtagatagtgcttacacatattcttctagatatgtagggaatgcttctacattgtctttgaggatgagatccatcagactattgttgagaataatttgtttaaacctggtgatcgtgtggccattggagcttctggtggtaaaggtatttccacacctgtatatgccatcactaactaatgaaatagcatgtgttctttatgcaactattgactattttctttcttcatgtatagctataatctgcatgcttctttctttattctgctcttgatcttccaacagactcaaatattttcatgtcatgactgctattatgcagattcaaccgtgctcgcatatgtgctatcagagttaaatcatcgtcacaaatattgtcttgatttgttcctcttatctgtggatgaaggaattactggttacagagacgactcactagaaactgttaaaaggaatgaaatacaggttcccctcccctctgccatcaacacaataatgcctgtctgctgcagctttttccttttaatattggttctattttttacagatatttaatcaccaacttttaccatttaaatgcatattcgtcagttgctgatacaaccgacttattgcagtatggcctgccattgaaaataatttcttataaggacctctatggctggacaatggatgatattgtgaaagcaattggcctaaaaaataattgtaccttttgtggtgtttttcgacgtcaggtaattcttacttgcctctttggtgcaattttttactagttataggttaagctttactgccaatccttttttctaggcactggaccgaggtgctgctctcttaaaagttgacaagattgtgactggacataatgctgatgacattgcagaaactgtgttattgaatatattacgtggtgatattgcacggttagtgctgatcattcctttgtccttttttttctgtggttgatgttaaggctgattttctttatatataggttaagtagatgtacctttataactactggcgaagatgggccaatcccaagatgcaagcctttcaaatacacctatgagaaggagattgttatatatccttattatgcaatatcccatatattctcatgtgatcttatgctctatttatcaattgtatgttattatccttgaccctatgacacgtatgcatatttcaaaaagctggactacttctccacagaatgtaatttctggctccttcctatgtataaatgttcaggaatcactgactagcattctgtaaccaatcattcttttatacacactagcaataattctgctaaaagaaatctgccatatacttgaatatgtcatgaacttttgacagtagtattatcttctaccgactttgagattaaatccatttaatttttctgtatttcataattcaggcatatattcaccaaatgcataccgtggatttgctcgcgaatttattaaagatctggaaaggatgaggtaaaggcttctgttgtccaaaggaatgatcattatttttccatttgtgtttggtcatttgttggtaaatactagctttgtcatccagaagagagaagcctatttcttgcttctgcagtattttttttttatcttgaacttagtaaattatgattggtgcagacctagagctatactggacatcataaaatcaggtgagaattttaggatctccacaacaacaaggatgccagagcaaggaacatgtgaacgttgtggctacatttctagtcaggtatagtgatggtataataatatatatatatgttgactttttaggacctcttccttgctgatttactcaatgagactgatgctaattag</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0598900, RefSeq:Os01g0598900