Os01g0609900

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Revision as of 04:48, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0609900| Description = Similar to PDR-like ABC transporter (PDR4 ABC transporter)| Version = NM_001050076.1 GI:115438443 GeneID:4327730| Le...")
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Gene Name

Os01g0609900

Description

Similar to PDR-like ABC transporter (PDR4 ABC transporter)

Version

NM_001050076.1 GI:115438443 GeneID:4327730

Length

7893 bp

Definition

Oryza sativa Japonica Group Os01g0609900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:25763932..25771824

Sequence Coding Region

25764210..25764470,25764566..25764820,25765015..25765186,25765270..25765497,25765599..25765732
,25765836..25765919,25766008..25766298,25766395..25766727,25766816..25767069
,25767170..25767326,25767409..25767512,25767614..25767774,25767951..25768264
,25768349..25768630,25768726..25769027,25769102..25769192,25769301..25769354
,25769520..25769596,25769698..25769942,25770057..25770145,25771546..25771824

Expression

GEO Profiles:Os01g0609900

Genome Context

<gbrowseImage1> name=NC_008394:25763932..25771824 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:25763932..25771824 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>gtgtcgtcggaggacggcggcgccggcggggagaaggtggaggtggacgtggggaggctgggggcgagggagagcagggcgctgatcgagcggctggtccgcgccgccgacgacgaccacgagcggttcctcctcaagctccgggagcggatggaccgcgtggggatcgactaccccaccatcgaggtgcggttcgagaacctcgaggtggaggccgacgtccacgtcggcaaccgcggcctccccaccctcctcaactccgtcaccaacaccgtcgaggcaatcgggaacgcgctccacatcctccccaacaagaagcagccgatgaccgtcctccatgacgtcagcgggatcatcaagccccggaggatgaccttgctgctgggacctcctggctcgggcaagaccacgttgctcctggcgttggcagggaagctcgacaaggacctcaaggtctcggggaaggtgacctacaatggacacgggatgcacgagttcgtcccggaaaggaccgcggcgtacatcagccagcatgatctccacatcggggagatgaccgtgagggagacattggccttctcggcgcggtgccaaggcgttggcactagatatgaaatgctgactgagttggcaagaagggaaaaggcagcaaacatcaagccagatcatgatattgatatctacatgaaggcctcagctatgggaggacaagaatctagtgttgttacggactacatattgaagatattaggattggatatttgtgctgatacggtagtaggaaatgagatgttaaggggtatatctggtggacaacggaagcgtgtcacaacaggtgaaatgcttgttggtccagcaagagctttgttcatggatgagatatccactggactggacagctcaaccacgtaccagatcgtgaattcccttaggcagactatccacatccttggcggaactgctgtcatctcattgctccagccagcacctgaaacatacaacttgtttgatgacattatactcctctctgacgggcaggttgtgtaccagggtccccgtgaacatgtgcttgagttctttgagttcatgggcttcagatgccctgccagaaagggtgttgctgatttcttgcaggaggtgacatcaaggaaagatcaggggcagtactggtgtaggcgtgacagaccataccgttttgtgccagtgaagcaattcgcagatgcgttccgttccttccatgtgggccgatccatacagaatgagctttctgagccatttgataggaccaggagccaccctgctgctctggctacttcaaagtatggtgtcagcaggaaggagttgctcaaagccactatcgatagagagcttcttctcatgaagaggaatgcatttatgtacatttttaaagctgttaatctaactctaatggcattgatcgtgatgaccacatttttccgtaccagcatgcgacatgatagagattatggaatgatctatctgggggcattgtactttgctcttgacacagtcatgtttaatggtttcgcagagcttgccatgactgtcatgaaactacctgttttcttcaagcaaagggatcttctcttctttcctgcatgggcctacaccataccatcatggattcttcagattcctatcacatttctcgaagttggtgtttatgttttcataacatactatgtcattggatttgatcccagtgtaagcaggttcttcaagcagtatctgctgctacttgcactcaaccagatgtcatctgcactattccgcttcattgctggaatcggaagagacatggttgtgtctcacacatttggacccttatcactgttggcttttgcagcattgggtggctttatccttgcaagacctgacgtgaagaaatggtggatttggggttactggatatccccgctatcgtatgcacaaaatgctatttcgacaaatgaatttttgggtcacagttggagccaaatacttcctggagaaaatgtgaccttgggagttagtgtactaaaatctcgtggtatctttactgaagctaagtggtactggattggacttggtgctttgcttggatacactctcctctttaacctgctctacactgtagctctttcagttttgagtccattcactgactctcatgcatcaatgtctgaggacgcattgaaagagaagcatgccaacttaaccggtgaagttgtagagggacagaaggacactaaatctaggaagcaggaattggaattgtcccatattgctgaccaaaactctggaattaacagcgctgattctagcgcaagcaggaagggaatggtgctcccatttgcaccactatctattagttttaacgacgtaagatactcagtggacatgccagaggcaatgaaagcacaaggcataacagaagaccgtttgttgcttctaaagggtgttagtggttctttcaggccaggtgtacttactgcattgatgggtgtaagtggtgccgggaagacaacactgatggatgttttagcagggagaaaaactggaggatacatagagggagatattagaatatctggctatccaaagaagcaagagacctttgcacgtatatcaggatattgtgagcaaaatgacatccattctccccatgtgacagtatatgaatcacttgtgttctctgcatggctgcggctaccctcggaggttgattcagaagcaagaaagatgtttattgaggaggtcatggatcttgtagagctcacatctctgaggggagcacttgttgggcttcctggagtgagcggcctgtcaactgagcaacgcaagagacttactattgctgtggagcttgttgcaaacccttcaattatttttatggatgagccaacatctggtcttgatgctcgggcagctgcgattgtgatgaggaccgtaaggaacaccgttaacactggcaggactgttgtttgtaccattcaccagccaagtattgacatctttgaagcatttgatgagcttttcctaatgaagagaggaggtgaagagatatatgttggtccagtgggccagaattcctcaaaactgattgagtactttgagggaattgatggcgttagtaggataaaagatggatataatccagcaacatggatgttggaagtgacctcttcagcccaggaggagatgctcggtgttgattttagtgaaatctacaggcagtcagagctatatcaaaggaacaaggaacttattgaggagctaagcacaccacctcctggctctactgatctcaacttccctacgcagtactctagatcgttcattacacagtgcctagcttgcttgtggaagcagaattggtcatattggaggaatccatcctacactgcagtgagattactcttcactatcgtcattgccctaatgtttggaacaatgttctggaaccttggaacgagaactaaaaaacaacaggatctattcaatgccatgggatcaatgtatgctgcagttctctacattggagtgcaaaactctggttctgttcaaccagtggtggtggtggagcgaacagtcttttaccgagaaagagcagctggcatgtattcagctttcccgtatgcatttggacaggttgcaattgagttaccatacatcatggttcagactctgatatatggcgtgctggtatactcaatgattggatttgagtggactgttgccaagttcttgtggtacttgttcttcatgtacttcacactgctatatttcacattttacggaatgatggcggtagggttgacaccaaatgagagcatagcagcaatcatctcgtccgctttctacaatgtgtggaacctcttctcaggatatctgatccctcgaccgaaaatccctgtttggtggaggtggtactgttggatttgcccggttgcatggactttgtatggattagttgcttcccagtttggtgatatccaacatgtgctcgaaggcgacaccagaactgttgcacagtttgtcactgattactttggcttccatcataacttcctgtgggtggtggccgtggtgcacgtcgtcttcgccgtgaccttcgccttcctcttcagttttgcgatcatgaagttcaacttccagaggagatga</cdnaseq>

Protein Sequence

<aaseq>VSSEDGGAGGEKVEVDVGRLGARESRALIERLVRAADDDHERFL LKLRERMDRVGIDYPTIEVRFENLEVEADVHVGNRGLPTLLNSVTNTVEAIGNALHIL PNKKQPMTVLHDVSGIIKPRRMTLLLGPPGSGKTTLLLALAGKLDKDLKVSGKVTYNG HGMHEFVPERTAAYISQHDLHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAN IKPDHDIDIYMKASAMGGQESSVVTDYILKILGLDICADTVVGNEMLRGISGGQRKRV TTGEMLVGPARALFMDEISTGLDSSTTYQIVNSLRQTIHILGGTAVISLLQPAPETYN LFDDIILLSDGQVVYQGPREHVLEFFEFMGFRCPARKGVADFLQEVTSRKDQGQYWCR RDRPYRFVPVKQFADAFRSFHVGRSIQNELSEPFDRTRSHPAALATSKYGVSRKELLK ATIDRELLLMKRNAFMYIFKAVNLTLMALIVMTTFFRTSMRHDRDYGMIYLGALYFAL DTVMFNGFAELAMTVMKLPVFFKQRDLLFFPAWAYTIPSWILQIPITFLEVGVYVFIT YYVIGFDPSVSRFFKQYLLLLALNQMSSALFRFIAGIGRDMVVSHTFGPLSLLAFAAL GGFILARPDVKKWWIWGYWISPLSYAQNAISTNEFLGHSWSQILPGENVTLGVSVLKS RGIFTEAKWYWIGLGALLGYTLLFNLLYTVALSVLSPFTDSHASMSEDALKEKHANLT GEVVEGQKDTKSRKQELELSHIADQNSGINSADSSASRKGMVLPFAPLSISFNDVRYS VDMPEAMKAQGITEDRLLLLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGY IEGDIRISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAWLRLPSEVDSEARK MFIEEVMDLVELTSLRGALVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGL DARAAAIVMRTVRNTVNTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPVGQN SSKLIEYFEGIDGVSRIKDGYNPATWMLEVTSSAQEEMLGVDFSEIYRQSELYQRNKE LIEELSTPPPGSTDLNFPTQYSRSFITQCLACLWKQNWSYWRNPSYTAVRLLFTIVIA LMFGTMFWNLGTRTKKQQDLFNAMGSMYAAVLYIGVQNSGSVQPVVVVERTVFYRERA AGMYSAFPYAFGQVAIELPYIMVQTLIYGVLVYSMIGFEWTVAKFLWYLFFMYFTLLY FTFYGMMAVGLTPNESIAAIISSAFYNVWNLFSGYLIPRPKIPVWWRWYCWICPVAWT LYGLVASQFGDIQHVLEGDTRTVAQFVTDYFGFHHNFLWVVAVVHVVFAVTFAFLFSF AIMKFNFQRR</aaseq>

Gene Sequence

<dnaseqindica>7355..7615#7005..7259#6639..6810#6328..6555#6093..6226#5906..5989#5527..5817#5098..5430#4756..5009#4499..4655#4313..4416#4051..4211#3561..3874#3195..3476#2798..3099#2633..2723#2471..2524#2229..2305#1883..2127#1680..1768#1..279#gtgtcgtcggaggacggcggcgccggcggggagaaggtggaggtggacgtggggaggctgggggcgagggagagcagggcgctgatcgagcggctggtccgcgccgccgacgacgaccacgagcggttcctcctcaagctccgggagcggatggaccgcgtggggatcgactaccccaccatcgaggtgcggttcgagaacctcgaggtggaggccgacgtccacgtcggcaaccgcggcctccccaccctcctcaactccgtcaccaacaccgtcgaggtacgtgcgtacgtaactactaccgcgtgaattttcctcgtggtggtttgatggcgcggcgcgatgccgcgatgtaacgtgaggagaaggcaaacgctttttgtttttgagatgatgaaacgattcgagagagaggccgagtttagtttcaaattttttcttcaaatttttaatttttttcattatattaaaattttcttacatacaaacttttaactttttcgttatatcattccaattttaatcaaattttcaattttagcgtgggctaaacacaccagaggtaggtgagcgtggccacggtctccgcggcgtcgcgcgcggacgccgctagctttggctacatccggtcaaacggtgggacggacagagcgtgcactcggtggcgccggcgccggcgccacggcgccaccgaacgcagcacgcacgtgttgggttgggttactgttgctacgctcagctttagttttgtgccctgggctacccgacgagttggcccaattgccggggagacttggcacttgtgcaagtgcaggttaattacaagcaagcaacgtgtactcttgtcgtgtgaggtgtgtttgcgtacggcaccgttcgattctgggtgatgaagattaactagaggcacataaaataagaaaattattaacatatgatcaactaagttttaattattttaaaccgataaaatagatttatttgttattttaaaatattttttatataaaatgtttttatacgagacgtacccgttttgaaaatctatatcttaaattaataaaaaaaccattattgattatttttaaaggaatagttaaatcctgaaaaaaaagttgtggatgaacagatcaaatagtaaaattaagattttttttgggataggaaaaggtgaaggaaaaaaaaaacgttttcttgaaaagaagggaaacaaggagcagatatagtggagcccactaagctaaaagcccccatggcgggcccggcctgcagggagactctttctggttcgggttcaaccaaactagttgaccgtttccactatccaccaacctcccaccctctccccgccacctcccaccttaccgccgccgccgccgtcgctggcggcgccgcggcggcgagacggcgaccgcttttcctacctcgaatgagttctcacggggtttccaccgacgcggcggcgcagaacaacatgacgcgtggtcgtcgcggtcgcggcgcgggggcggggctcagcggcattccgtcgagcacgtggcgcgcgcgcgcgagtcgcggtacttgtggccgtcccctctctcgccgacgcgacggcgcgctgcctcgccgagagaagtaagttttctgcgtatcgctgtgtgctgacatggttggtggtgccgtgctgtgctctccaggcaatcgggaacgcgctccacatcctccccaacaagaagcagccgatgaccgtcctccatgacgtcagcgggatcatcaagccccggaggtaaaaacccataacacagccagccatgcatcatcttcttctgcgtgtaccagtgcatcatgattcatggcgctcgcgctaacgcatccatccatggtggtgctctctgtgtaggatgaccttgctgctgggacctcctggctcgggcaagaccacgttgctcctggcgttggcagggaagctcgacaaggacctcaaggtctcggggaaggtgacctacaatggacacgggatgcacgagttcgtcccggaaaggaccgcggcgtacatcagccagcatgatctccacatcggggagatgaccgtgagggagacattggccttctcggcgcggtgccaaggcgttggcactagatatggtatgaacctgaatgccaagattacatgatactcctaccatctaatgcttattgacgcctttgacatgagtactgaggtttgctgtttttgctttgtttagaaatgctgactgagttggcaagaagggaaaaggcagcaaacatcaagccagatcatgatattgatatctacatgaaggtgatgatgctatcacataagagtgttctagtttttttttctctctcttggaattgtatatgtaaccaggattgcattggcgaatcatttcaacaggacatgtgatatatactatacatgtctactagcaatgtaagtaacaccttttatatttcatacatgtaggcctcagctatgggaggacaagaatctagtgttgttacggactacatattgaaggtacagtctgctagctgtggattaaaccgtagtactacaaatatgatttcttgtggcatttgtgtatggataatatctcattcctgcttctctgctacataaatgcagatattaggattggatatttgtgctgatacggtagtaggaaatgagatgttaaggggtatatctggtggacaacggaagcgtgtcacaacaggtatgactaacagtctttagcaagatgggggttgttctttaaagaaaaactctaactgtcctatatgttcacaggtgaaatgcttgttggtccagcaagagctttgttcatggatgagatatccactggactggacagctcaaccacgtaccagatcgtgaattcccttaggcagactatccacatccttggcggaactgctgtcatctcattgctccagccagcacctgaaacatacaacttgtttgatgacattatactcctctctgacgggcaggttgtgtaccagggtccccgtgaacatgtgcttgagttctttgagttcatgggcttcagatgccctgccagaaagggtgttgctgatttcttgcaggaggtatgtgctgtttatcatctgtaaaaattcatgccatttactgcacaaggttttcaaaatagacagtactgatatctctgaatttgttgaaaaaggtgacatcaaggaaagatcaggggcagtactggtgtaggcgtgacagaccataccgttttgtgccagtgaagcaattcgcagatgcgttccgttccttccatgtgggccgatccatacagaatgagctttctgagccatttgataggaccaggagccaccctgctgctctggctacttcaaagtatggtgtcagcaggaaggagttgctcaaagccactatcgatagagagcttcttctcatgaagaggaatgcatttatgtacatttttaaagctgttaatgtaagttcatatctctggtgcactaattttgattcaagatatcgatcgatcgatctgatcatctgaaactttctttcattgcagctaactctaatggcattgatcgtgatgaccacatttttccgtaccagcatgcgacatgatagagattatggaatgatctatctgggggcattgtactttgctcttgacacagtcatgtttaatggtttcgcagagcttgccatgactgtcatgaaactacctgttttcttcaagcaaagggatcttctcttctttcctgcatgggcctacaccataccatcatggattcttcagattcctatcacatttctcgaagttggtgtttatgttttcataacatactatgtcattggatttgatcccagtgtaagcaggtaagatgcattgatgcagatatctacatgcctaaaagaatccaagaaataagcttattttgtatgcagatatctattattttgcaaggtgttgcctagtatattgatagaaatgttccacaataaatgagtctattctgtgaagtctgaaactctgaataactttttgtgcataggttcttcaagcagtatctgctgctacttgcactcaaccagatgtcatctgcactattccgcttcattgctggaatcggaagagacatggttgtgtctcacacatttggacccttatcactgttggcttttgcagcattgggtggctttatccttgcaagacgtaagttactggattccctttcaataattgcatgttcttatatgtacttgaaattgatggttttaaatgctaattgttcctgacatgtttctcttttatagctgacgtgaagaaatggtggatttggggttactggatatccccgctatcgtatgcacaaaatgctatttcgacaaatgaatttttgggtcacagttggagccaagttagtgccacatttcttcaccagcaattgaacttgcaatgttataaactgtaaaactgaacatgtattttgcatgtcacagatacttcctggagaaaatgtgaccttgggagttagtgtactaaaatctcgtggtatctttactgaagctaagtggtactggattggacttggtgctttgcttggatacactctcctctttaacctgctctacactgtagctctttcagttttgagtcgtaagtatatttgaaagacattttttagaactccaaaatatctaatcaacatttgcgagctaaaagataataactgtggctacttgaatttttttcgcagcattcactgactctcatgcatcaatgtctgaggacgcattgaaagagaagcatgccaacttaaccggtgaagttgtagagggacagaaggacactaaatctaggaagcaggaattggaattgtcccatattgctgaccaaaactctggaattaacagcgctgattctagcgcaagcaggaagggaatggtgctcccatttgcaccactatctattagttttaacgacgtaagatactcagtggacatgccagaggtaattttgctcagaacgactacaagtgcgtaaaaatcattatgttaacacaggtttttaacccaattatgttgttttatattaacaggcaatgaaagcacaaggcataacagaagaccgtttgttgcttctaaagggtgttagtggttctttcaggccaggtgtacttactgcattgatgggtgtaagtggtgccgggaagacaacactgatggatgttttagcagggagaaaaactggaggatacatagagggagatattagaatatctggctatccaaagaagcaagagacctttgcacgtatatcaggatattgtgagcaaaatgacatccattctccccatgtgacagtatatgaatcacttgtgttctctgcatggctgcggctaccctcggaggttgattcagaagcaagaaaggttagttagctagattatgggctaacatttgtttcttgtgtatgtttttcggttgttaactgactgtacatcttacgcgctgaaccatgattacagatgtttattgaggaggtcatggatcttgtagagctcacatctctgaggggagcacttgttgggcttcctggagtgagcggcctgtcaactgagcaacgcaagagacttactattgctgtggagcttgttgcaaacccttcaattatttttatggatgagccaacatctggtcttgatgctcgggcagctgcgattgtgatgaggaccgtaaggaacaccgttaacactggcaggactgttgtttgtaccattcaccagccaagtattgacatctttgaagcatttgatgaggtgactagttgtttctttgggaagttatcctttgattcattagatgaactctgtatattaactacgttgctgttcaccttatctacagcttttcctaatgaagagaggaggtgaagagatatatgttggtccagtgggccagaattcctcaaaactgattgagtactttgaggtaagaacggaaaatcaacataaataacaatcatctcttcatgcttcagcacgtaggctgactaagtcacatcaaacggaaattccgttgttcatttgttcagggaattgatggcgttagtaggataaaagatggatataatccagcaacatggatgttggaagtgacctcttcagcccaggaggagatgctcggtgttgattttagtgaaatctacaggcagtcagagctatatcagtaagcttcggcacatgccattctgattaatagaatgaatagtgtatttgaactgcaattctaattattattattattattttgcatatttgcaatttcagaaggaacaaggaacttattgaggagctaagcacaccacctcctggctctactgatctcaacttccctacgcagtactctagatcgttcattacacagtgcctagcttgcttgtggaagcagaattggtcatattggaggaatccatcctacactgcagtgagattactcttcactatcgtcattgccctaatgtttggaacaatgttctggaaccttggaacgagaacgtacgtctctaacatatgttcttattattttaatctgtttgacaaataacttctaaacctttactcatcatatcttgttgcagtaaaaaacaacaggatctattcaatgccatgggatcaatgtatgctgcagttctctacattggagtgcaaaactctggttctgttcaaccagtggtggtggtggagcgaacagtcttttaccgagaaagagcagctggcatgtattcagctttcccgtatgcatttggacaggtaatttgtcttttagactctcggttggcctagttctaatctcatgtatataatgtatgacttcaaagactctgatgcctgaattctgacttgcatttgggattgaactgaaatggctgtgcaataagctattcgttagcactgtcaagctcttttggtcccataacctaacaatgccacttttccctttttaggttgcaattgagttaccatacatcatggttcagactctgatatatggcgtgctggtatactcaatgattggatttgagtggactgttgccaagttcttgtggtacttgttcttcatgtacttcacactgctatatttcacattttacggaatgatggcggtagggttgacaccaaatgagagcatagcagcaatcatctcgtccgctttctacaatgtgtggaacctcttctcaggatatctgatccctcgaccggtaggttattctcccatctcaatttcgccccctttcttttctcatgaaatgtcgcttttattagtcctttagaaccgttttaaatttctctacagaaaatccctgtttggtggaggtggtactgttggatttgcccggttgcatggactttgtatggattagttgcttcccagtttggtgatatccaacatgtgctcgaaggcgacaccagaactgttgcacagtttgtcactgattactttggcttccatcataacttcctgtgggtggtggccgtggtgcacgtcgtcttcgccgtgaccttcgccttcctcttcagttttgcgatcatgaagttcaacttccagaggagatgagaaagtgatcattcttttttgcattcgttctattgtactactgaatagctattagctatcctgtaaatggtatagagatcatcttctagtatttcattatttcaagcatgtaaaaattcggacatctagtaggattctctaggaaaaagaacccttgttgagcttcctgcctcttgaccagctctagctgataaatgtcggatgcagatgaatgtaaagtatggccttcaatgttttcatttttgtcgaattaatgaaagcagaaaatttgttgattc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0609900, RefSeq:Os01g0609900