Os01g0613900

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Revision as of 04:48, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0613900| Description = Protein of unknown function UPF0052 and CofD family protein| Version = NM_001050099.1 GI:115438537 GeneID:4325327| L...")
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Gene Name

Os01g0613900

Description

Protein of unknown function UPF0052 and CofD family protein

Version

NM_001050099.1 GI:115438537 GeneID:4325327

Length

6270 bp

Definition

Oryza sativa Japonica Group Os01g0613900, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:26011014..26017283

Sequence Coding Region

26011199..26011342,26012221..26012313,26012536..26012661,26013020..26013067,26013287..26013388
,26013969..26014052,26014489..26014560,26014871..26015027,26015255..26015298
,26015541..26015637,26015766..26015898,26015987..26016103,26017065..26017275

Expression

GEO Profiles:Os01g0613900

Genome Context

<gbrowseImage1> name=NC_008394:26011014..26017283 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:26011014..26017283 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgcgtcgcagccatccgatggcgcaattgctcgccgccgccaccaccaccaccacgccaccctgcggcggcctcctaaccgcgcgggcctccgcgtcctctcccggctgcttcctccgcgcgctgccgagatcccgcgccatggcctccgcctccggagccgacgctgccgctgcggcggttgctcccccgtcgctgctcgtcttctcaggaggaaccgcttttaatggtgttgtagaagagctgaagaaagtgacgactcgagttgcacatgttcttcctgtttccgatgatggtggaagcacagctgagattgtgcgagtgcttggtggacctgctgtgggtgacattagatcaagatgcttgagattgtctgatgaaagcacttcagaagccctttctgttcggacattgcttgggcaccgtttgcctcttgatccttcagaagcaaagcttgagtggtaccagattgtagaaggagagcacgctttgtgggatggtgtctcacagccatacagagaaacaatacgtgcctttttagtctacttccataatgagatacttcgacggtcagctgaaatgttttgcttcaccaatggcagcattgggaatttcttttttgctggggcacgcatattcttccagtctctggatgctgcgattttcttgttctcacgtgtgtcacagatccctgctgaaagtcttgttcttccagtgatatccacaaatgacaggcttacactgggatgcgaactatgggatggaactatcatccgaggtcaaaatgaaatatcacatccaagcaatggacgtaaagaagttgttaacaaggattgtaattcatgtagtgcacttccttcaaggattaagcgtgtcttttacatgtcaagtgaaggcagcaacctgttgcatgaggtatttcctgaagctaaccgtacagttttggagcagttaagtaaggtggactgcattgtatatgctatgggatcactctttacatcagtctgtccatcattggtattgcgtggcattggtgaaactatagcatcaagatccattccgaaggtacttcttttgaatgggtcgcatgacagagaaacaactgggttgcctgcttctggctttgtgactgccattactgattctctaaaccgtacatatggatatcctgacaaaagtctaaagaatcttcccaaagactatgtgaatgctttattggtaccaaaaggaggccaaattcctttggatataaaaaacttgtcttctaaaggaatctttcatgtggttactgtggactctatacacgatggaaagacgggcattatttttgatccgcattcattgattcaagccctgaccagtctaatatcggataggcgtttcgtggaacctgatcttctaacagaaaatgtagagtctgtatgctga</cdnaseq>

Protein Sequence

<aaseq>MRRSHPMAQLLAAATTTTTPPCGGLLTARASASSPGCFLRALPR SRAMASASGADAAAAAVAPPSLLVFSGGTAFNGVVEELKKVTTRVAHVLPVSDDGGST AEIVRVLGGPAVGDIRSRCLRLSDESTSEALSVRTLLGHRLPLDPSEAKLEWYQIVEG EHALWDGVSQPYRETIRAFLVYFHNEILRRSAEMFCFTNGSIGNFFFAGARIFFQSLD AAIFLFSRVSQIPAESLVLPVISTNDRLTLGCELWDGTIIRGQNEISHPSNGRKEVVN KDCNSCSALPSRIKRVFYMSSEGSNLLHEVFPEANRTVLEQLSKVDCIVYAMGSLFTS VCPSLVLRGIGETIASRSIPKVLLLNGSHDRETTGLPASGFVTAITDSLNRTYGYPDK SLKNLPKDYVNALLVPKGGQIPLDIKNLSSKGIFHVVTVDSIHDGKTGIIFDPHSLIQ ALTSLISDRRFVEPDLLTENVESVC</aaseq>

Gene Sequence

<dnaseqindica>5942..6085#4971..5063#4623..4748#4217..4264#3896..3997#3232..3315#2724..2795#2257..2413#1986..2029#1647..1743#1386..1518#1181..1297#9..219#gctgcttgatgcgtcgcagccatccgatggcgcaattgctcgccgccgccaccaccaccaccacgccaccctgcggcggcctcctaaccgcgcgggcctccgcgtcctctcccggctgcttcctccgcgcgctgccgagatcccgcgccatggcctccgcctccggagccgacgctgccgctgcggcggttgctcccccgtcgctgctcgtcttctcaggtgcgtcttgctctctcccgctctcgccaatttggatcgcttggagcgtatgatagtgcgtgcgcgggcgccggggggtctcggtgatttgctggggattcgatgcgtgcccataccttgctgcgagtatgggcacgcgtgatggattggtcgaattggcgagaggaagttcctgtgatttgtgattggctgtgatttgggcgattctgtgcataatattttgtgtgtgactgagtatgcgagtttgggaacaaaaattgtcgaaattacatttgtgcattttttttccttactcaagccatggatccttcagtactatcttactatcttacccctccttgggatatgtattttgacgcaatgtggcaatttatgatttggtatgctcaactaggatgatggaaagtgtccagtgctttatgtgctcctttctagctcacgtttggatgttgaactaatatgacaattatggcatggatacatatgaacgctgctccgatagccctggtttatgtgttgataattggcacatcttaaattcttgtgatagccatgtctgaaatcctggatattctacctgcgaaacggaacactaaatggtgtttgtcttggtaacactaggttctgcgaaagcatatctccatgcagcgctggatgaaaataatgaaatgtcatttaatttccatgtcaaaattttttgtttcatatatcctgcttgaatgatggattgcacaaactataccatgctcctagagtagctgtttaaacagttctattttctttcttatggattatgcattttgcgactttgcgggatttcataaattgaaattcgcttggcacttgcaaccttaccctatctgtgtaatgaacaggtttccttttttccttttctggttggcacaggaagggatgcactaatgtcatttacttttgtgttctaatatttaacgctatccaggaggaaccgcttttaatggtgttgtagaagagctgaagaaagtgacgactcgagttgcacatgttcttcctgtttccgatgatggtggaagcacagctgagattgtgcgagtgcttggtaggttgaaatctcttgccacaccacctgctacctgagataacaatttgtatagtaattgaaaatccaacctgttcttaaatgttaggtggacctgctgtgggtgacattagatcaagatgcttgagattgtctgatgaaagcacttcagaagccctttctgttcggacattgcttgggcaccgtttgcctcttgatccttcagaagcaaagcttgagtggtagcaattagtctgtctattgcatatcaaaactcacctttgttcattcaaactggatcaagtaactggctgatgttttttatgtatgaaacaagatgtgtgatgttgttaggttgtgtacttgacaggtaccagattgtagaaggagagcacgctttgtgggatggtgtctcacagccatacagagaaacaatacgtgcctttttagtctacttccataatgaggtcagttcctctgtagtattttcttttcatagcatatttttaatttgcttaaagattttgctttgaaaatttcaaatgaacagttttctgactggagaacagaagagaatatgatttttcgcctcccccccttctgttttcttttttgccaagatttattttcctggtatagagggcagtctgatgatcaagcagtcgttccttgcccatgacatataattgcagtcgtttcgtttgtgcagatacttcgacggtcagctgaaatgttttgcttcaccaatggcaggtgattcttttaaggtgaaatttgcagtaaatcatattcttgtgattgcttttaacatgtcacccgttggtctcttgccacttctcaattcgatggcgtgacagggatgtcctttgtggcaatacttatttcttggtattggggcattttttgtggtcacaactcataataacaatactcccatcttgcctacatctgttattgactacagctttttattcttgcagcattgggaatttcttttttgctggggcacgcatattcttccagtctctggatgctgcgattttcttgttctcacgtgtgtcacagatccctgctgaaagtcttgttcttccagtgatatccacaaatgacaggcttacactgggatgcgaactatgggtaacatcacttatcagtattttagttgcacaataaaaaaaccagtagattcatttttcggactgctctggtgatctggtcttcttgttcttatgttggttaattttattgcttccatttatttatttatttattttgttatttcactgatagtttaattagccccccttataaactttctttaattattccaacttgcttctgaaaactggcatgattgtctttgttttacaatgttactcctattattacaaacattcccttactacaaaatcacatataatcatcttggacattattccattttcaggatggaactatcatccgaggtcaaaatgaaatatcacatccaagcaatggacgtaaagaagttgttaacaaggtactccagtctataaatcatttcagcatactcccaatagtagttaatatgatctatgtaacatcattgcgatgaaggctccaaagcatttctggggccacttcaatatgttctatggaacaacttttttatgttttatcttataaaagaagctatagaagaaaaaaaaatgttactcctacctttaaaattgtgttgccatatccttctctggtggactgatatttacaattgtgcaaactccatttcgttatgacaatatcggctatttttgcttcatttccgtttttgttcatggcatggttgtcattgattcacatgttatcttgaatctatgtttttctcctttttacctgggcatgcttgttgatttcttataatatttgtttatctgtcactgatttattttttattttgctttttatttttggaaaaggattgtaattcatgtagtgcacttccttcaaggattaagcgtgtcttttacatgtcaagtgaaggcagcaacctgttgcatgaggttagtacattcattttatcgtaaccacctagactgaacctttcattgcacatctatcatgaattcttggttgggtaagactttgatttttgttaaaacaaaagctactagtccctctaagaattgattcagcctttctactttaatttctcagcgtaaaatttttttcttgaataccacacatcttcatgttcttaataatgatcatgatataataatcagaaaatgtagtctatatttccatttatcatgcttatctaatcagtctcatggtgttacttacaacattgtgaactataccattcatcaatagtgggtttttagctcttggttaacttaattctttaaagagtacgcttactccttctaagcttagtaggcatgagaagggacaactccttcatatagtaggctgttatgttttgtgaatatcatgggcttaaaagggtgtgcacttataaccatgtaagcatattgggatgacatgtatcaaattagccacttcacaacagtatatatgtaaacaacccttttttatgttttaaaactcctaactgttcctactaaccttgcaatgcaggtatttcctgaagctaaccgtacagttttggagcagttaagtaaggtggactgcattgtatatgctatgggatcactctttacatcagtctgtccatcattggtaaccatgctgctctattttttgtttgtacataattgtattgacttgatggtcttaagtcttaacatgatatcagatatgttcatttttatactacatgcagtactaagcaaacatgggtgccgtgcacatctgattactgatactgactttaagcttttttacctgtgcctgttttccacatcagcttgtcttcttctgaaatttaaggctgtgcaggtattgcgtggcattggtgaaactatagcatcaagatccattccgaaggtagtcatgttaaaaaaatattgtcttgttttcatatgctttaatacaatgttctgtatttgtgttgattcattttttcttgattccatcatgtaaataaaagcattactaagacctgacattcttgttaaaccatattgacttgcttcatgctcttgatttcattatgctagaatgggtttaatagcaacctagaatagtggattcacctccatagtagtggactcatggggttatttgatgtgtgaagggagtttttcttcacataaaatgttgtttttcttggtttttagccccttggttgatcatgcttgtggctattggtgcttttgtctaaaattatttattctgaatctaggtacttcttttgaatgggtcgcatgacagagaaacaactgggttgcctgcttctggctttgtgactgccattactgattctctaaaccgtacatatggatatcctgacaaaagtctaaagaatcttgtaagttcggtgactgtgcctttgaacagattttcagctaatgattggaggaattatgcatcatatcatttactagctttagaggatgggaatatcccacagatcagcgtcccctggtccacatcttgaatgattcagttaaagatgtacatatgcccctgccccttaacattatctgtgtgaagattttccatctgacagcttctttttcattttgtgcagcccaaagactatgtgaatgctttattggtaccaaaaggaggccaaattcctttggatataaaaaacttgtcttctaaaggaatctttcatgtggtaagtgtttgtgtttgctaaaacagtgatcattaagtgtaaaatgtgtggaaaaatgttatagttatccatcgagtccttaactgtgtaatattttcgagaatggatagaaaatccagcctctatatccatgaatggatatatacagccaaaggttacatgaatacttagattctaggtcttttactgagaaacaatcacgaaaaagaaaatgaatggtcgagatgctccgaaattttaacgcttctttcctagttggcttttctgtgtgcgataccatgttacttccgtcatttcatccccaatgaaagaggatatctagcatcagcttattaattactactacctccgtttcaggttataagacgttttgactttggtcaaagtactgtttcaagtttaactaaatttgtagaaaaaaataaaaatattttcaacccaagacaaatttgttatgaaaatatattcaattattgatttaataaaactaatttggtactataaatattactaattttgtctataaacttagttaaacttgaagtagtttgacttcgactaaagtcaaaacgtcttataacctgaaacggagggagtacatgataaaactacaataattgcagattttgcacggtgggtcacattgagctctgtagccttggttaaacaagcttacttttgcatacttaggcatttatccattacatgttagaaaaaaggcacactgttatttacacaagataaatatgaaaactcaatgtgtaggtcggtattccagaagtacgcgatactggtccacgttcttctgtattgtagcttgtgcataaacagtattgagattgtcgttttaatgtgctaacttatgaagtatattgcaggttactgtggactctatacacgatggaaagacgggcattatttttgatccgcattcattgattcaagccctgaccagtctaatatcggataggcgtttcgtggaacctgatcttctaacagaaaatgtagagtctgtatgctgaaatctcagttctcaaatgttaggtatatatctcgctcctattttttccctgttcaatacattgtatggggaaactgtagcatcagttgcccacttgcacttcgtcagctagcttcattgcttcattcattgaaaacaaaatatacaaaaacaattgtgctcatagtttaatttcaccatcgaatc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0613900, RefSeq:Os01g0613900