Os01g0616400

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Revision as of 04:49, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0616400| Description = Similar to Floral homeotic protein HUA1| Version = NM_001050112.1 GI:115438593 GeneID:4326652| Length = 6501 bp| De...")
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Gene Name

Os01g0616400

Description

Similar to Floral homeotic protein HUA1

Version

NM_001050112.1 GI:115438593 GeneID:4326652

Length

6501 bp

Definition

Oryza sativa Japonica Group Os01g0616400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:26128777..26135277

Sequence Coding Region

26129064..26129183,26129529..26129675,26129785..26129838,26129920..26130035,26131272..26131318
,26131421..26131458,26131785..26132003,26132087..26132146,26132239..26132337
,26132410..26132463,26133642..26133883,26134993..26135182

Expression

GEO Profiles:Os01g0616400

Genome Context

<gbrowseImage1> name=NC_008394:26128777..26135277 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:26128777..26135277 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcggaccccttctacccgcacggccacggcggcgccgcgggcggcgagggcgcggccgcggcggggtactcgtcctacgaggtcgacctcatcgcggcccgctacggcggccgcccgctcgccaacccttcctcggccgccgccgacctcgacgcgcggctggccggcgcgaggcgatccatgggagttctctatcatcagccaattatgggaagccatagtactgttgaacagattgaggctttgtattcttcaaatactatgaccaagcgccctaggcttgaaagcagccttcctatatatccacagcgaccgggggaaaaggactgtgccttctatatgatgacccgaacctgtaaattcggaggttcctgcaaatttgaccatccacaatgggttccagagggtgggattccaaattggaaagaggctgcaaatgttgaagaatcctatccagaacaagaaggggaaccagattgtcctttttttatgaagactggtaaatgcaagtttggatcgaaatgcaagttcaatcatccaaaggaaaaggttaatgcattagcgtctggaaataccaatgataagcatctaattgctgatagttctatcttaccagtgaggccttctgagccactttgttctttttatgcaaaaacaggcaaatgcaaatttcgtgcaatgtgtaagttcaatcatcccaaggatattgaaataccttcaagtcaaaatgaacccgaaagtgcagtgactgttgaaggagaaacggatattggttcagcagctgattcagtttcagcgaagatgcaaactccagttgctgctgcgcaagagtttaactctaaagggctgcctatgagaccaggtgaagttgattgtcctttttacatgaagatgggcagttgcaagttcggttctacttgtcgattcaaccatcctgatcgtctagttttaaattttccacttccactgggtcaaaccattctccctactccggaatccatgctgctaaattcatctgcaaacttcatgcaaggctttgattttcatgcggcacacatgcctgttggacctgggccagtcacctatccccagaggcctggagcaactgtttgtgatttctacatgaagacaggattttgcaagtttgctgaccgatgcaagtttcaccacccaattgatcgttctgctcccgatccctctgcaaactgggagcctgctgaggagtctgtgcagcttactcttgctggcctaccaagaagagaggatgccgtggtatgtgccttctacatgaagactggcgtgtgcaagtttggtatgcagtgcaagttcgaccacccaccccctcaggaggctatcgccaaggtgtcgaattcagggagctga</cdnaseq>

Protein Sequence

<aaseq>MSDPFYPHGHGGAAGGEGAAAAGYSSYEVDLIAARYGGRPLANP SSAAADLDARLAGARRSMGVLYHQPIMGSHSTVEQIEALYSSNTMTKRPRLESSLPIY PQRPGEKDCAFYMMTRTCKFGGSCKFDHPQWVPEGGIPNWKEAANVEESYPEQEGEPD CPFFMKTGKCKFGSKCKFNHPKEKVNALASGNTNDKHLIADSSILPVRPSEPLCSFYA KTGKCKFRAMCKFNHPKDIEIPSSQNEPESAVTVEGETDIGSAADSVSAKMQTPVAAA QEFNSKGLPMRPGEVDCPFYMKMGSCKFGSTCRFNHPDRLVLNFPLPLGQTILPTPES MLLNSSANFMQGFDFHAAHMPVGPGPVTYPQRPGATVCDFYMKTGFCKFADRCKFHHP IDRSAPDPSANWEPAEESVQLTLAGLPRREDAVVCAFYMKTGVCKFGMQCKFDHPPPQ EAIAKVSNSGS</aaseq>

Gene Sequence

<dnaseqindica>6095..6214#5603..5749#5440..5493#5243..5358#3960..4006#3820..3857#3275..3493#3132..3191#2941..3039#2815..2868#1395..1636#96..285#ctctctcacacacacacgcacgcaccgcgagcgcaagccggcaaccaccgtccgcgaaaaccctagccgcgtcggcggcttcggggggagcgtcgatgtcggaccccttctacccgcacggccacggcggcgccgcgggcggcgagggcgcggccgcggcggggtactcgtcctacgaggtcgacctcatcgcggcccgctacggcggccgcccgctcgccaacccttcctcggccgccgccgacctcgacgcgcggctggccggcgcgaggcgatccatgggaggtgagagccagctccccttcatcatctgcccttgtgtccgttgacgggtgtggttccctttggatgatgctcactgattcgagaatcgtttaggtgcacggattggttgataaagcgtgttctgttatttcgagagttgattacgtttgctatggcggcttgttgtcggtgttaggctgacaagaaagaggaggaggggggattctttgcagcatttagtgcagatcatttcattttgttggtagagagaattgtggctgggttctgttaccttgtattatatcccaacacgtacgatttacttcgttttaccgcaagatgcgctccatttggatatttaatttcaattggaatgtagcggagaatggctacgtggaaatcatagcataatttagcactaaccaatccccatgcctgtctcgtggtcggtcggttttaaattattaaaaatggctgaggctgaggcaagtaaggttgaactgttttgttcctgtgtgatggaagcgtttcaggatcactaacctatcctctccattgcgggagccatgttaaagttgtgtggtcgactgaaatgaaatgcccctacagttttttgcaacatacagcaaaagcatgtatggattagtggatatgcctacagaacattattaaatctatgggaattggtcccacatttcatgcatctgacaccacaaagttagagctttggctccaccactgatcttcttcactagcttctcagtcggagaagcttctgatagatcttctttgagtaggttgagcttagttgttttcattgacatgcttctgttgctcgtccaacttggaggaagttacttggtagtcctttggacttggtgtgcttctagcagtgagagctttgtgcagtttgtcattttaccatcatgatagtttctcaatccttggttaactggacttgtcttgttttcttatgtagtgcactagtgcagtaatcagttgtcatccttgatccttttctctatactactattactattattactacctattcactattactattatccttgcttttgttcttgtctaatacatgtagcttataaagttcttttgtatatctactatagttctctatcatcagccaattatgggaagccatagtactgttgaacagattgaggctttgtattcttcaaatactatgaccaagcgccctaggcttgaaagcagccttcctatatatccacagcgaccgggggaaaaggactgtgccttctatatgatgacccgaacctgtaaattcggaggttcctgcaaatttgaccatccacaatgggttccagagggtgggattccaaattggaaagaggtgatcacctgtcaatgttattatttatagaggtctatattttatagtaatgtatattataatactatttttaaggtgtatatgttactttgaaaaccaaaagtgtattactgttagcatcgctagtagcaaaaaggaaagaaagaatctaagagtgcaggtggtgttaattatgtgtgtttctttgaaccttagaagaaagaatttaggaatcaaagctttcattaattggattgacagtatttaagtgaaaaacagttgtgacaggaaaccggatattttggacaaaaaaaattattgtgtgaactaaacatttgtggcatatatttgtctgctcctgttgctgcattgctttagcatctgctgtttgaagcattggataacacgctgatcttgtataagggctatattggcaattcgtgtcaacaccatgttttttggtaccttacagcactaggagtccagccaagatttgtgagtaggactatcccaagtgtgaatttcacaataaagacatggaattgatattctttgttgatcatgtggcttatatatttgagcttaggggtggctcttgttcatgcatatgtcagtgttaagcactgtttggttactctatgacatataatttctttgcagttgcaactgcatacatctgcttagttttccttttatggagaatatatagtttgatctggctgaagcaatgaagcatgctgtgactcatctgacaaatgtattgctggtgtgggactcagggtgtactggcattgcagtgtcttagaggaacttgttttcttgtagaccaatcagcaaacatttgcacacttgcctttaaacatttctcttcacagtcataggtttaatagtagttggcttttaatcttttgatgaatgcccatctgtacatcaagtcttcaactgccaataaacatcggaattgagtgttttggggggttgggtatatagttataaaaaagacacgactacagttttcagtagatatattttttctagaccacttttaataaaatgctctggctctggttaattaccttatgcaatttggtgtttttaaggtttccgaaatatttattgtgatgtttgtggttgtaattgtgtctttttatcctccaaattcatcccttctggtttgctttcttaaaacttcttagcaggctgcaaatgttgaagaatcctatccagaacaagaaggggaaccagattgtcctgtaagcagttcatagccctatttttgaatcaatatgacaaatatgctcataatgttgttcttgatgatgcagttttttatgaagactggtaaatgcaagtttggatcgaaatgcaagttcaatcatccaaaggaaaaggttaatgcattagcgtctggaaataccaatgatgtaagttgtttccatttacttactagactactaacatgtcatcatctcaaccgctcaggtctcaacctgtatgctcttttatgaaattgcagaagcatctaattgctgatagttctatcttaccagtgaggccttctgagccactttgttctgtaagaagctactgcaccttcttttcctttttgtatggcatcaagcttaaaaaccgattttcagttgtgcttttgtacctcagttttatgcaaaaacaggcaaatgcaaatttcgtgcaatgtgtaagttcaatcatcccaaggatattgaaataccttcaagtcaaaatgaacccgaaagtgcagtgactgttgaaggagaaacggatattggttcagcagctgattcagtttcagcgaagatgcaaactccagttgctgctgcgcaagagtttaactctaaagggctgcctatgagaccagtatgtccttatcaagtgcctgataactttgtttcattcgtaaaccattttgagaagacctgtgaattatgtaatgcaagataacgatgttgaggatgctctatgcttagattccgcacatctgtattttgtactcaattcctggtacatggttttggtacataattcctctctcaacaagttctgttttttggggtattgataagactgaattttttatcaatatactggtgtatatagtgaaatctttttgtctatttacatgattctaggtgaaataccttttgcttgttttgtttaataccttctcttctccttcatggcagggtgaagttgattgtcctttttacatgaagatgggcaggtatccccttaagcagaataacactattttctgttggctttggcacttctgcatgagtttggagatacttggaatctcacatttccttttgtccctctacagttgcaagttcggttctacttgtcgattcaaccatcctgatcgtctaggtttgtcactcatggtcacaactaaccatattcacaaagttaaatttatcatgacatgaatttgaggtagttaagatccttttggccttcttccacttctcagaaggagcgtggcaaccatcatctagctgctcgtctatttaatagcataatttaacttgcaatttgccctggttggatagagcacttacgtaatagccttgtactcctctttttcataatattagtgcattttctttaggatcatttttttcataatattttgcagaaatcaagggtgtacttgtggcatagtttccactcggttgcaccccctacttctctgctgtaaaagagcttgagtggtggtggttgtgtatttttatctgtttctcaacaattagtttgttagttctcagatacgttgttaggcttatctgttggagatatagtttgtgagctgatgcattggctgaacttatctgtttatgtggctatgaaaaaggatctctacaacccttagttggcagcaaggaataaacaagtttatttacctctacttctatttctccctgttttatctgatccatccagactcctgtcttccttctaatctgttattatccaccaaacctcagcttattcatcccaagtccatgtggcagtacaatagaaattggtatctgttgccattaaccttttcttatgccgctgcatggtttcttatactgcgaggcagaaggaatacaatgcattaaagaataagagaaggaatgaattcattctctaggtaccttcaaggttcttaaaattcattaattcaagtatggggcaatgtaaagctacttatatctgatgtaaatattatgaaatgaataaatgatcagatcttgttatgagttgcagcacggttgactggaatactgaagacattagacaaatactaaccaggttttactaactttttcttttcttctttttggacacattatttttaagaccgtgtcctttctactgtacctttaaagccaaaacaagcagagaacttgccatatgaaccaaacaagcttgtattgtattcaacgttcaaaactgtccatgccttgaacttaacaccttcaatctgatagccgcactcttctgccatatctgttattgcatctaaattaaacaagtctgatagtgttcatgattcttacatgaattgaatcttatgactcgacatgtattcttatggtaatttggtgctcaatgcagttttaaattttccacttccactgggtcaaaccattctccctactccggaatccatgctgctaaattcatctgcaaacttcatgcaaggctttgattttcatgcggcacacatgcctgtaagagtaaacaaaggaaattaaagttggaaataggtgctgtgagatacacaagttgatatgctcttttgtaaaatgcaggttggacctgggccagtcacctatccccagaggcctggagcaactgtttgtgatgtatgacagtctcttcgctatgaattattaactagctgattgatatcaactactttacgcatatagtctgggtgtgcctctacagcgttatgctcttttcttaatgcagttctacatgaagacaggattttgcaagtttgctgaccgatgcaagtttcaccacccaattgatcgttctgctcccgatccctctgcaaactgggagcctgctgaggagtctgtgcagcttactcttgctggcctaccaagaagagaggtaacatttcaaagcttgtcggtaataccttggctactccgctcgttccaatgatcttactatttttgggctgcagtcctttcaatttttacatatgttctcccgttagcattgatcttgatgatatagtaagctgcatatcgtaaccgtcaccctgcatattgtaacgatcttgatgatgttccctggattgcttttttcatcatcatataagaagaggtgttatcacttgttcaccctttcatctagctacatagatgcattctcggaatgtagtcatgtatgaatatcctcctggatagcatttgttttgatgcctaaactaatgcatatgctgatatgcaggatgccgtggtatgtgccttctacatgaagactggcgtgtgcaagtttggtatgcagtgcaagttcgaccacccaccccctcaggaggctatcgccaaggtgtcgaattcagggagctgagaagagagacaaatatattgacgcaaggccgaattaaatccatgccttattcattcctcgcatatgaattaaacatgaaaccgcactacttgggtaggtatgtcgtctttgtagatctctgtggcatctgatgtattccctgttatttagtggttttagctgatgcattttgagtatatgcacctttcggtttgggcgttcatgtgcaggtgacatcatatgctatagtatttttttattgactttgttgagcatatctaactaaaatatatactacctctgttgtc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0616400, RefSeq:Os01g0616400