Os10g0495500

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Revision as of 08:43, 21 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os10g0495500| Description = Protein of unknown function UPF0120 family protein| Version = NM_001071486.2 GI:297610722 GeneID:4349000| Length = 5...")
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Gene Name

Os10g0495500

Description

Protein of unknown function UPF0120 family protein

Version

NM_001071486.2 GI:297610722 GeneID:4349000

Length

5093 bp

Definition

Oryza sativa Japonica Group Os10g0495500, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 10

Location

Chromosome 10:19309454..19314546

Sequence Coding Region

19310904..19311317,19312065..19312574,19312671..19312742,19314209..19314333,19314422..19314443

Expression

GEO Profiles:Os10g0495500

Genome Context

<gbrowseImage1> name=NC_008403:19309454..19314546 source=RiceChromosome10 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008403:19309454..19314546 source=RiceChromosome10 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgtcggactccgacgagtacgtcgacttgcccgtgtcggatgaggaggagtgggaggatggggagtcggaggaggacgaggagaaggtgggctctcgtaagaaggccaaggttcacgcgaagcagctcaagaggctccaggagaaggatcctgagttctacaagtatttggaagagtgtgataaagagcttctggaattcgacgatgatgactttgatgataatgaaggaagtgctgagaaacatagttctgttcctaaagaagaaccgaaagaaattgtaaagcctattacaatgcaaatggttgattcctggtgccaaggagcagaagatgggaagataggttctatccggtctattctcgaagcattccggaaagcctgccattatggtgaagaaagtggaaataattctgcaccgaaatttagtgtcatgtctggcagtgtacttgacaaagtcatgcactttgttttgaaaaacatggatagaatccttcgtgaattacttgatgcacctagctttggggggaagaaagagacagttagtgagctgatgattactaagcaatggaagaggcatgggagattaatgaggttataccttgtaaatgcactccacatgataacagagttgactgatgagcaaatggtagcatttactgtacatcgtgtcagagcttctgctgtttttctggcggccttccctgcactcctcaggaagtatgtaaagaaatcctaccaaaaagtttatgattggcaatacatattctgccttgagctttggacaagtgttgtgtgtggatgtagttctgaggaagaccttcgacctttggcttatccactaacccagataatacatggtgtggcatgcctggtaccaagtgcgcgttactttcctgtacgcctgagatgtgtgaagatgcttaatcgcattgctgaagctactggtaccttcattccggtgtcttccctgctgcttgatatgctggaaatgaaagaacttggagggaaaccagatgctgtaggcaaagcagtgaatctgttcagtgttaaacaggtatattttctcgtaatacaacacttcctttgggaggactactttgaaaaaacttttaataggtacttttgtctggcaggtagataa</cdnaseq>

Protein Sequence

<aaseq>MSDSDEYVDLPVSDEEEWEDGESEEDEEKVGSRKKAKVHAKQLK RLQEKDPEFYKYLEECDKELLEFDDDDFDDNEGSAEKHSSVPKEEPKEIVKPITMQMV DSWCQGAEDGKIGSIRSILEAFRKACHYGEESGNNSAPKFSVMSGSVLDKVMHFVLKN MDRILRELLDAPSFGGKKETVSELMITKQWKRHGRLMRLYLVNALHMITELTDEQMVA FTVHRVRASAVFLAAFPALLRKYVKKSYQKVYDWQYIFCLELWTSVVCGCSSEEDLRP LAYPLTQIIHGVACLVPSARYFPVRLRCVKMLNRIAEATGTFIPVSSLLLDMLEMKEL GGKPDAVGKAVNLFSVKQVYFLVIQHFLWEDYFEKTFNRYFCLAGR</aaseq>

Gene Sequence

<dnaseqindica>3230..3643#1973..2482#1805..1876#214..338#104..125#ttcagttccccaacccgccgccgccgcctccactagggcacgccgccgccgccgccgcctccactagggcacgccgccgccgccgccgccgccgccgtcagccatgtcggactccgacgagtacggtgcgttccccgccgcttcttctcctcgtcctctcctctatgcactgtttgtgttagttttgacaacgtttggctttgctgggtttagtcgacttgcccgtgtcggatgaggaggagtgggaggatggggagtcggaggaggacgaggagaaggtgggctctcgtaagaaggccaaggttcacgcgaagcagctcaagaggctccaggagaaggttcgtctccgtcctcgccgtctcctacgattcgcgcacccttctcccaagcttatattgcttactattattacttgttactagtaagcatcaaaagtagcatctgaattgctcggctccattccatatgtaatgcctatgttgatttagctttgggctgtttatactaggattggggattctggtatgtgttttttattctggtatgtgttattctggtatgtgttttttattcttatatttatactaggactgagcacgcaaggcagtgaatgttagaaggtatattgcatgcttaataggtggatattggctcgctctcgtatgcatttggtaaacttgtctggttggcccttgttgattgattttattgattttggaaatggactgcaatcttccgagttttacacgcggaagtttgtgcagagtactgaatagtgacgtggttgctgcaaataagtactataagcaaggcatacaagttccttaacaaatataatgatatattttagccattctgatcattttgaagaaggtgatggtaaactaaatctcaagttctgattgtgcatttggtaatcagggcaagtactataagcccctatttattgcccataaatttgccacataggattagatgatgagttggaggagagaagttaggagagagagaatgagccatccctcatgcaaggggcaacctccacacaatctccaagaaaaatgtaagatgacgtgagagtaaactaatattggggtttgtgtactagatgtgacatgttgtatttgttacctcttaagtaatgagaagatgacatggtttaaattagatgtggcactcacctccactataaaacttgccctcaggaagctagttgtaatgtcatagggattgctggtatgtaaagagtacttttgatatctagaattacgtagctcagtactgttatgatttttttctgcttacgttggatttatagctgtttatacataaaggtagttctacagttctacttgcacttttagtgtggaataacctatggctctggtttagcggccctggcattgcaattgggacagatgaaactgaagaaatcatatgtgttaagcacatccagattccagtttaagtactttcagattagttgcttgcactttgaactagccctcttttttggaataaagaacatgttattgactcgacttttggacagtcttattctaaaaataattgatactttttgtttcctggtagtgaccattagacggctttttacaaatttagatgataattatcattgttcaatttattgctgaaattcttatctgtatgcatcattgttaacactgcaacaaccaggaagtttttcttgagctaatcatttcttccatccctagttcttgtcatatctgtgctgctgtattctgtcagctgcttacgatggctgcaaaactcttatttgtaggatcctgagttctacaagtatttggaagagtgtgataaagagcttctggaattcgacgatgatgactttgatgtaacacaaaactatttattcatttattttgcatttttttttcttcttgcttgagagaactatatacattgtatgtttgctgcatattttgtttaggataatgaaggaagtgctgagaaacatagttctgttcctaaagaagaaccgaaagaaattgtaaagcctattacaatgcaaatggttgattcctggtgccaaggagcagaagatgggaagataggttctatccggtctattctcgaagcattccggaaagcctgccattatggtgaagaaagtggaaataattctgcaccgaaatttagtgtcatgtctggcagtgtacttgacaaagtcatgcactttgttttgaaaaacatggatagaatccttcgtgaattacttgatgcacctagctttggggggaagaaagagacagttagtgagctgatgattactaagcaatggaagaggcatgggagattaatgaggttataccttgtaaatgcactccacatgataacagagttgactgatgagcaaatggtagcatttactgtacatcgtgtcagagcttctgctgtttttctggcggccttccctgcactcctcaggaagtatgtaaaggtttgtagctttggctcctcatccatctttagtaacctttcgtgtcatctgatgtctctgcagagtttgtaatttcttttattttcacttgactaattcgattacaggctctgctgcatacctggtctagaggacgaggtgctatgcctcttgtttcatttttgttccttcgagatttgtgcattcaactaggttcggagtgccttgatacgtccctcaagggtatctacaaggcttatttggtgaactgtaaattgtccaaatcaatcagtggatcaaaattgcagcacattcaatttcttggtaattgtgtcagagaattgtacaatgtggacccacaaagtgcatatcagcatgcttttgttttcatccgtcaactggcagtcatcctaaggggagctcttactgaaagaggaccaaaggtatgtgtagttgaactctgatgatcatatactgcaatgtaattatttacttggcagctgacaagttttgtggtccctatttcattttgcaagacatcgaaggacaaaaagcagaaagaaagtatcaaaccaacgaagaaacggatggaggtatgtcattattccaatgttgcatatgtactatcgaggaatagagtccactttgggataacactattgctttctttcttatgttagtttagttttactctctattctatattctattactctaactgagcctttcttttctgacttgttatttgctgaccttgttcttgtgtagaaatcctaccaaaaagtttatgattggcaatacatattctgccttgagctttggacaagtgttgtgtgtggatgtagttctgaggaagaccttcgacctttggcttatccactaacccagataatacatggtgtggcatgcctggtaccaagtgcgcgttactttcctgtacgcctgagatgtgtgaagatgcttaatcgcattgctgaagctactggtaccttcattccggtgtcttccctgctgcttgatatgctggaaatgaaagaacttggagggaaaccagatgctgtaggcaaagcagtgaatctgttcagtgttaaacaggtatattttctcgtaatacaacacttcctttgggaggactactttgaaaaaacttttaataggtacttttgtctggcaggtagataagaaaacagtgaagacacgtgcctttcaggaagcatgcatcttttccgcggttgatgagttggctaagcatttggcccaatggagctactccattgccttctttgagatgtcctttttaacacttgtccggcttcaaaacttttgcaaaaccgttaaggctgacagattccggagagagatcaaagatcttatccatcaggtttgtgaagcatgtaagagagaattgtacctaactgaatgcatgtatgctgatgtttgtatcctttgtgattccagataaaggctagtgctgagtttgtaagctcaaagcgtgcaggaattggattctctcctaatgatccagccgtggattcatttctacaggtatggttggtcctgttggatgtgcactgtatatttgttatactcatttagtgtcattttgtgagatatataatgttcatttcaggttgagaaggaagcaaagtcaagtcctctatcaaaatatgttgctactctacatcagagaagtcaggacaggatggactctctggacgacacaaggttggttacttggtttcattgatgttcatctaaatttaggagtcagccagttgagtcgtagcacttataaacagaaatgcaccaatttttttttacctcgtcgtcttatcatgcaacattttctagtagtctttacatgtgagtggagctatgcttgatgctccatattgcgagtacatataattaataaaattactgatcattcttttccctatcagcgttattgtgggggcagagtcctcaaccttttcacggaggttgtcagaagcacagaagcgacaggatgaacaagatgatggcgaagacaccattgcattcagtaagaacttgttgactgaaaagaagaaaaccaagtacgctatcaccttcctctttgcctctttttgtttcttttattggaatggtagacgttatatgtttcctttcgggggtttgcagaactccaaaggagaagagcaagaagcgagcccataatcacgacgatgtcgctacggaggaggatattgttgaggatttgatcttgagttcagacgaggaagacgaagatgaggacaagaatatggaatcagatgaggatgatggctctatgcctgttgaagatgacagcgatgacgatttcgtcgacccagacagccagtggaagaaacagaagaaagagaaatcaaagaaacggaacaagcggcaaccctcaaagaagggttcgtcaacaacaaaaagaaaagagaaaatcccacatcccaagaagaaggcgaagcattagccagagataatgaaaacgatgatgatgtgttttcaattttgaaagaaacagacgcatcatgaaaattttgttttaattgagaaagacctctgccatttcgttgcgttccttcaccgttattatttatttatgtatgcttaatcgttc</dnaseqindica>

External Link(s)

NCBI Gene:Os10g0495500, RefSeq:Os10g0495500