Os01g0629400

From RiceWiki
Revision as of 04:50, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0629400| Description = NLI interacting factor domain containing protein| Version = NM_001050175.2 GI:297597242 GeneID:4326666| Length = 523...")
(diff) ← Older revision | Latest revision (diff) | Newer revision → (diff)
Jump to: navigation, search
Gene Name

Os01g0629400

Description

NLI interacting factor domain containing protein

Version

NM_001050175.2 GI:297597242 GeneID:4326666

Length

5230 bp

Definition

Oryza sativa Japonica Group Os01g0629400, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:26789733..26794962

Sequence Coding Region

26793901..26794266,26794545..26794712

Expression

GEO Profiles:Os01g0629400

Genome Context

<gbrowseImage1> name=NC_008394:26789733..26794962 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:26789733..26794962 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>cataatcttaactatttctcatatgcagagactcttgtacattcaacattggatcattgtgacaatgttgatttcacccttcaagttttctttaatatgaagaaccatacagtttatgttaggcaaagacctcatctgaagatgtttcttgagaaggtagctcagatgtttgatcttgtcattttcacagctagccagagaatttatgccgagcaactaatagatagactcgaccctgatgggaggttgatttcacaccgtatttatcgtgagtcatgtatattctctgagggttgctatacaaaggatctgacaattcttggagttgacctggcaaaagttgtaatagttgacaatactccacaggttttccagttgcaagtggacaatggtataccaataaagagctggtttgatgacccctcagaccaggaattggtcgagttactcccattcctggagacacttgttggtgtggaggacgttaggccaataatctcgaagacattccaccatacacttgagcagaattag</cdnaseq>

Protein Sequence

<aaseq>HNLNYFSYAETLVHSTLDHCDNVDFTLQVFFNMKNHTVYVRQRP HLKMFLEKVAQMFDLVIFTASQRIYAEQLIDRLDPDGRLISHRIYRESCIFSEGCYTK DLTILGVDLAKVVIVDNTPQVFQLQVDNGIPIKSWFDDPSDQELVELLPFLETLVGVE DVRPIISKTFHHTLEQN</aaseq>

Gene Sequence

<dnaseqindica>4169..4534#4813..4980#gagctgtcccctacctgtgctctccctctccatcttcctctctctcccagtgggtgcgtttgtgcgagacttgaggctgagcgagaggggaggagagatcgtgctccgcgagggaacggcggcgaggagctgggtgcatctcgggtacgtgcctcctctctctctctctcctcgcgtcgctcgagctctgctttggacgggggatttccggagctcgatttcctgctcgggctcgactctctgtgattcttgtgggttttgtgtaatttgatctggggggatgcttcgctctgtgtagggtggtacatgtttggctgcttgagtatgtttcagctagttgttgggtggttgagctttttgtacccgtgagaaatacttgtaagctcaaaatttgggccgaggtatagagaggaattgtgtttgtgtgaaggttttcgggctgctcggtggaaaaggagtagcgagcttttgggatgtggcatgtgtttggggaattctgtaggctgcgttcctgctgtagcttagtttctgatcttaattactgtcctgacaagttcgaacgaaaatttgtttcatgggaaagtataaaaaagggaggggaaagcaaggaagggattttagttggtgttaaagttgttgcttgctaggagggtttaaagattttgaaagggttgttcgattggtgaattcactggagtgagtgttttattttagtggtagattttggagaaaaaaaatggtggctggctctaatttattgagaacatatgggtaaagtatgttcttccagtagatcattagtctgtagatattttaccagcttcacttttctccactaatgtctttagtgatatcaaatgtttcaacagttggacttttcctactggaactgcagtactttcaacatgctttttgcaaatgcctgcattaaggatgaataaaatgttaagcaccgactatttagggacgcaggagcttcattcattttgcaagaccaccgaaatattggaagactcacagtctcaagagattgcactcgatagaacagcggtggggtcaacacttctaagtcatcaaaatggtaaagtccgtatttatactattcttgattttgtttgctctggctgattttgaagaatttctgctcagcatacacctgaacctgccgcactgcaaaagctgtttttaattctatgcttttagcaccagtgactctccaagtgcatccgcttcctgggatgcatgagtccatcaatcctctgtgctggccatgttactaaaacaagaagtgtggcgatgttgatttaactagtttgtattgtgagcacaccagaaatagccagtgaaagatgcatacctggctacttatcccttgaattatatagtgcatagggttaatgccgacctgaacacaacaccttgagtttatttaatacactggtatgctctcagatgcagtttactcacataaataagaattttagccctgttatgctgtgtttgcttaacacttattgcaaggtacaaacagaacttatctgtaaatgaaattattagagaatatcctgttggttattgttttgtgctgactgctgagcacaaaaattagatcttaccgaataaaaaaatatcaagtttattgaattactgtgtgcttcagaaacaaaataagtttaatacaagcaaatgcattgtagtttttcaaggccgaatgtgctacagtttattttttcataattccagttttattatgtatgtagaacatagaactgccccttcataaacagttggagatacgggcatgttcagcacaaacacagtttatcatgttaatactattcattagttagtagatatatcagtatttttttcttctcaacaccatcaaatttacatgttcaattttaattagttattcgtttgcagtttgctctacttctgaagtatcagggggaaactttggaatcgctgaagtcagttttttacaggatgaatatgatgcagaaaccaccggtgtactgccaccatcatttttgtcctgtggctctagatctatggtgattaactttttttatttccattataaattgcctgatgaattatttctgttcctgatacttgctaatattttctcaatatcctctgtcatcagatattcagatttcttctgtttttcagaagcaaatgctttgattagttgtgtaggttacaacaaacatagaaataaaacaatgtgaacctgttttgataaatgaggtggctagtcttacatgcattagggaccaaccaaaggggcttaaccatgacagctccgctccagtgttgtatccgacggatataggggcagcgtaggttcacattatcatattgttatctgtgcagagagagatttcgtgttctttgcatattatccacattgtcaaacttaaagggctgatgaaaagttactactaagataacctttgttccatcaaagctatatttggacatcatgaggcaacgtattgaagttgttcaaagccagtatcttcttttgtaatataaattatttttttgcgaacgcttgtaatataaattatgaaactgtatactctaacaacatggactgaagttaggaaatcataccggtcagtcactgggattggcaattactaacctatgctccttaactgtgatttttccacgaatataattcttaattttactaattctagaaatcagcttttgaatgtcaggtccctcctcactgtcataaagctaccagtgcctagagatacgagtgttcgtacaggatatgctatattagtaaaaaaggcttagatgataatcataactggctttctgttatattcgtgccatctgcgtacagattgtttccatttcttaaaagctatggaaccatatggattattcaaactatcgtttatttttgtagctccctatatcagtaccatcatcatcatcatctagtctggagactgtcctcttttctgactcaacgtacagcgatcttcaggtaaaagagacgaaccacaatactacaggtaacattggcttcagttccaaccctttcaatcatttaagttgtcaacttgtatatgaatttgaaaccaggctttcatatcttggtaactgaatgctttctctctcgctcttcttttttcatttttctgtttctgcagcaatggatgaaaacaatgagttccttcagctgattcttagtagcaatgatgaaggatacaatgctggaagtgaattccaagtttgggatgttctggacttctacttctcagaaagcttttcagctgtgcagtttgatagcttgatgggttttacaaatgatgttagttcttcccatcacgattgtatgaatcttgttgacatggtagagcggcctgttgcgctcctgtccctaaatgataccgaggagcaaaataactctactgatgagttccctgatgatacatcatcataccttcaaatgaaaccctcagattccgaaactgaaagtaattatgcctctcgagatgttgcggtaactgaatatgttgatgaaaagccactttctagaggcctgcctgatttaatggatgtcgactcacccggtcgtctatcaaaatcagcaagatcaaaacaaatcactcttgttctggatttggacggtaagctggcagtaacttcacatcattcaatcttacctttgattgagtgttcttgttctgaatttgtgagttattctacatcagctggaaaacagttgatgaccagctattgaacaatatcccaccaaaataataaaatgaaccagaagaaaaactttttgactatgttctataatgatgaagtttatctaaagcagtcctgttctgtcctcattgatatctcggatgacatggatcctgtgcttctgctttcttggaagttttaagtggcaattcgacttaacttattttataaaccatctgtacatttatgaggatgacatatatttgagctcccaatacatggtttatggctaatgctctttcttctgggagtgatagcttttacattatttctttctatgggataacaagttagccactgcctgctgttataggatgctctcgaggataatggaattcagttattatatcagcatccttactaccataattttcttttctgacataatcttaactatttctcatatgcagagactcttgtacattcaacattggatcattgtgacaatgttgatttcacccttcaagttttctttaatatgaagaaccatacagtttatgttaggcaaagacctcatctgaagatgtttcttgagaaggtagctcagatgtttgatcttgtcattttcacagctagccagagaatttatgccgagcaactaatagatagactcgaccctgatgggaggttgatttcacaccgtatttatcgtgagtcatgtatattctctgagggttgctatacaaaggatctgacaattcttggagttgacctggcaaaagttgtaatagttgacaatactccacaggtagcatgcctttttccgaatactgtatatgctttatatggacagatggaaatgtttccatttctatagttctagacttagacttggttgctagaaatatggaacagcgatctgtgggcatctaatagctttcttctaaattgaacagagagctttataactctttttaacttgtcaagtactatgtacacagatatgcttattatttcttagctgcctatttcttgtcgatgtatgttttccaaagttgtaagtaaatcttcatctttttttttcaggttttccagttgcaagtggacaatggtataccaataaagagctggtttgatgacccctcagaccaggaattggtcgagttactcccattcctggagacacttgttggtgtggaggacgttaggccaataatctcgaagacattccaccatacacttgagcagaattagatctagagaattcatgattttcctcgactgagcctgtcactgaagcttactaggttcactccataaggtgcaccccactattgggggggaattaggcataggatcaagattcaccatttatgttatgttagctgttacaaatagcgagcataaactgcagtcgtcgccatggcttgtatatgtgtgcatcagttttctgtttcagatccttgtacaggaacaatagtgttgaataaaacggttctgaatc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0629400, RefSeq:Os01g0629400