Os01g0639200

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Revision as of 04:50, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0639200| Description = NAD-dependent epimerase/dehydratase family protein| Version = NM_001050209.1 GI:115438788 GeneID:4326581| Length = 6...")
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Gene Name

Os01g0639200

Description

NAD-dependent epimerase/dehydratase family protein

Version

NM_001050209.1 GI:115438788 GeneID:4326581

Length

6333 bp

Definition

Oryza sativa Japonica Group Os01g0639200, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:27396786..27403118

Sequence Coding Region

27396786..27397114,27397222..27397375,27397543..27397743,27400401..27400576,27402839..27403118

Expression

GEO Profiles:Os01g0639200

Genome Context

<gbrowseImage1> name=NC_008394:27396786..27403118 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:27396786..27403118 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgggcgtcctgaggagcacgcagagcatgcaggcggaggtggaggagatgcgggcggcgctgctgcatggccacgggggcggggcggcggcggcggcggcggccgggtggcgcccctcggccggcgacgcggacgtcaagcgcaccgcgggcggcgacgggggcgcggcggggccgcgcaccgtctgcgtcacgggcggcatctccttcgtcgggttcgccgtcgtcgaccgcctgctccggcacggctacaccgtgcgcctcgccctcgagacccaagaggacctggacaagctgagggagatggagatgttcggcgaggacggccgggacggcgtgtggacggtgatggcgaacgtgacggaccccgagagcctgcaccgggcgttcgacggatgcgccggcgtgtttcacacctcggcgttcgtggatccggggggcatgtccggctacacgaaacatatggcaagcttggaggcgaaagcagcagagcaggtgatcgaggcgtgcgtgaggacagagtccgtcagaaaatgcgtcttcacgtcgtcgttgctagcatgtgtatggaggcaaaattaccctcatgaccgacggtttcctaccatcatcgacgagaactgctggagcgatgagagcttctgccgtgacaacaagctgtggtttgcactgggcaagacggcagcggagaagacggcgtggagggcagccaggggtagggacctgaagctggtcaccgtctgcccggcgctggtcaccggtccgggattccgccgccgcaactccaccgcctccatcgcctacctcaaaggggctcgcgccatgctcgccgacggcctgctcgcgacggcgagcgtggagacggtggcggaggcgcacgtccgggtgtacgaggcgatgggcgacaacacggccggcgggaggtacatctgctacgaccacgtggtgaagaggcccgaggagttcgcggagctggagcgccagctggggatcccgcgcagagcggcggcggcggcggccgcgcaggactccggcgaccggccggcgaggttcgatctgtgcaggcagaagctggcgaggctcatgtccacccgaaggcggtgcacgtacgacgactactactccgtcgcattcgactag</cdnaseq>

Protein Sequence

<aaseq>MGVLRSTQSMQAEVEEMRAALLHGHGGGAAAAAAAGWRPSAGDA DVKRTAGGDGGAAGPRTVCVTGGISFVGFAVVDRLLRHGYTVRLALETQEDLDKLREM EMFGEDGRDGVWTVMANVTDPESLHRAFDGCAGVFHTSAFVDPGGMSGYTKHMASLEA KAAEQVIEACVRTESVRKCVFTSSLLACVWRQNYPHDRRFPTIIDENCWSDESFCRDN KLWFALGKTAAEKTAWRAARGRDLKLVTVCPALVTGPGFRRRNSTASIAYLKGARAML ADGLLATASVETVAEAHVRVYEAMGDNTAGGRYICYDHVVKRPEEFAELERQLGIPRR AAAAAAAQDSGDRPARFDLCRQKLARLMSTRRRCTYDDYYSVAFD</aaseq>

Gene Sequence

<dnaseqindica>6005..6333#5744..5897#5376..5576#2543..2718#1..280#atgggcgtcctgaggagcacgcagagcatgcaggcggaggtggaggagatgcgggcggcgctgctgcatggccacgggggcggggcggcggcggcggcggcggccgggtggcgcccctcggccggcgacgcggacgtcaagcgcaccgcgggcggcgacgggggcgcggcggggccgcgcaccgtctgcgtcacgggcggcatctccttcgtcgggttcgccgtcgtcgaccgcctgctccggcacggctacaccgtgcgcctcgccctcgagacccaaggtcagctccaaatccagctcacccccacatcttttaccgtttacctgttcgattacctcctttgccttgtttggctgtttcgcttctgtgtcaccgacatgtgggccccggtcgccacatgtatctcaaagccccggccacttgtgccaatacattccacgtatttttattattttatatacctcggcaaaaaaaacaaacatgaaaaaacaaaaacgctcgtgcctagcatgacgtaccccttcgctagttcgctgtatccaatttctggactttatctcgcagcagtagattttacttctaccagcttattgagccgatcagtcttccaatccatcttaattaccactcgtttttggacaaaaggcaagcgacttcccagcataaaccaagcttagttgctgttcaagccggattagcagatactctgcgtctcctcccgaagtgttgttggggatggaaccttgccacctaccgctgcactgcgggtttggtgtgctacctgcagtccggtcaccatttcgtcacatctccatagaccggttgctagcttggagtagctaggaactactacgctgcatcttcccgtcagtagaatttgctttcgttggataatggcgtaacgctctttgacggtgtatatccatttgcgaatagagaccaaactaaaaaaaaaaatattggcataatgctctgctcgggctggtgggtggtatggcagccactttcctatgcacagtgtgcatgtagccgtgagagtatacctaatgatgattgcttttatgctttggtgaatataaccaacttaattacctacttggaaatgacagaccgaaagaaacgtgcgaaagctaaagagaggaacatatacgtttatgtctaattcgccacacacaaggaaaaacggaagaaaaaaacaaatgctaacaaggagtaggattgatgggaggtggtagctagactgaattagtttaagacgtacgcaaccatctctatgatcgatcagcgttgaacatttgactactcgtatatataaagctaccgggcgtatgatttcctcgtgtagtagttagttattctcgcattcgttttttcctcgtgctatatgcacaatctttggatgcattcaaaacattctgattgtgactttctccatataccaatgggctcatgcttatggcgtaacattaaacttttcgccggtttttattcttgttctggtggtcagccggtttcttggaaagaggaaattgatcgtagtttcaaagtctcctatacgactcgtccagttggggatgaaacaatctacaaatcaaacactagcagagacgtacgcagaatttttttttccactggcagcaccatttttctttgacccgaggtagaaatcttcaggtctaccacatcatgattagatttcaaccaaccagtgctccaattcggatacccattttaacattgcgccactaattagtcagctttgtgttgcttagttgagccatactttacgcgttctgatccttcacatcagctaacaaatccaatccttcccctgaaccaaaatctttcagtactgctcccttcaattccctagcaagaaagcagagaacctttcgacaaacaaatagtgttgatactaattataagtgggtgctggacttctgatagcttcgtttcaacagtctacacccaagggccattaggaaaatttatctgatgatagcttagctccaatcttaatctggaacaacatgtctggtccattaggcctccactggaatagaggaatatcacgggagttgaactaattcttgtgaaaatcctgtagaagtcatgcctttatctttatgctatcactaccattctctaagtcatcgcggataagaaaccatgggcaagaaaattttcagaatatcaaaaagataaaatcctctctccggtttcccagccagctacgaatagttggaaacacacctgctgcttggctatgcttataatagtggaacatgattcatatttctggttttcaaatggagtcaggtgagaaggatggaacgagattattgataaagtaccgttccaaaaacgttcttatccttatcggacaattatcaatgatagataacagaaagtaaaatcacacggcatcatcgctattattttattaaagcaacatggcttctttttttttgtgagtattcatgcaaccatcgtaatcttgacgtgtaataatttggcttattgctatttgctacatcgcagaggacctggacaagctgagggagatggagatgttcggcgaggacggccgggacggcgtgtggacggtgatggcgaacgtgacggaccccgagagcctgcaccgggcgttcgacggatgcgccggcgtgtttcacacctcggcgttcgtggatccggggggcatgtccggctacacggtgagtgcaccaaactcggtccctaaccttaagatcctcgcaactactacacctacctatgttatgtgttccctaatgctgtcacagaagtcactaagtaagttagttatgtgttccctaatgctgtcatatagaagtcactaaataagttaggttagtaaaatatagaaaaaatcatgcaaacaaaacagagtgaacttgaagagaatggcggaaaacagagtatatatgctccatctaacattctaactcaaggcgcaactgaacatcaaagattgatgttgaatgtttggtgtactataaaaagagcaatattatttatggtcgttaagaaggtatcaagaagtactacaattttactagaagacactaaattttacaattaaaaaaagatacctcctgatacaccataaaataactcgtaaaaggaacattgcgattttctttgtggtgatgtggtggggacccagtaacagtctgaacttctggaaatcaagcaattaattgacacataacggcgttcgggaatttttgaagccaatggacatagatcattttcgtaattaatggcatgcacatcacagagcctcagacatctggcccagagaaatttgtacagttgagctgtagagtttgcatctacatgtacatggcctttggtactgcacgtggaggcactcatgcctcaaaattcagaaagattttgtaagaccgagtgacgagactctgtagttcgtgtaccacacggggaagattctgctcattcttggcttctcctcccaagagacaccaaatagtttatggtacccgttatctagaaacgttgggcgctgcggtgtccatcacagatgttaacggttataccttccatggttacttaaaaactgagaccttgctgattgtcgattccattggtcgtacagtagtatcaagatttcaaaaatgacaaaccagtactattgactgatgtgaagagcggcagatgccataaaactagccttatttcgagcagacttaataaaaaaagggtttatagaaaaaggctcaatcaccaactcgtaccttcaaggattattttgtttacgagccaatgtcttgtttgttgccaaaggcagggtgggagaggatcttgaggctggacagtcctccttgtcgccctttcgttgacattttgccaaacctgaagtcctcctgatgggagcaggttgtaactggtagtcctgcctatgcagatggtcttgcacctatctgatccatgaagtagagcttccggagcacagcattggtgggcgcacgcctgtcaactccgtcacctaattcattgacagaaaatcgcttgtccatagcaggggaccgggtttattatctgataagaacgggtaatcaggtaggattagtatctgagtgtgatgagagtccgcattgcagcaagagttggacaatacaaccaccgaatccacttcggttgggtacttccaagcagccgtcagaatcatgacgaccttagtgtaaccaaggcgattaaagaacagagatgccatccagttgcgtcctactctgcaacaatatatactccctctcttttagatttattaacatatatataaatataggcaatattataaaatcttatattgtgaaatgcacaatagagggagtatgctagtaataggctttattttactgttcttgaatacctttattttttttaccattcttgttccacacaatataacctctttttaatggaagaaatttgctgcaatttggaggaaatgaactggttcaatgaaaatcctgtaaaatttatgcgtttcaaagtagccctacgttcgattttgctatatatttgtcgacaaattttcccctaaaaatttaacagatgtaattacagtacaatcgtagtgtaattacactataacttgcatgtaattacactgtaactatagtgtaacttgtatgtaactttcaaaaatctctccgtaatatgttatttcgataaaatggaggtcgtgggaacaaattctttcacatatgtgtgtactatgatttgttttcttcctcaccaaaacaaatcttgtaatagatctaacaattcaaaattatgtgaaacttacatataagttacactgtagttacatgcaagttacagtgtaattacatatatgttacagtgtaattacattatgattgtattataattacatctgtcaaatttttaggagaaaatttgtcaacaaatgtataggtagtcccccctacgtttggtatctcaatcacactagtgtttatcatttatctgcagtaagagcctattgtagctaaaataaaccttaccaaattttggtattgccaaaattttggcaagatgacaatattgcgaaaattttggcaggatatcttatgtatttacttaatttggcaacaaactaaatatagatattttttaacaactttacattaaaaaaatggtatggttgaaaatagcatcaaagtgaacgggcctgattttcgctagtggaccgttcgctctcacccatcattcctggtagtcaattcttgtgtagtcatggtaatttgttgtttagtagcgattgggcgtacgattgaggcggtgtaattaactttttccctgttaatgtccaactctcgaacagaaacatatggcaagcttggaggcgaaagcagcagagcaggtgatcgaggcgtgcgtgaggacagagtccgtcagaaaatgcgtcttcacgtcgtcgttgctagcatgtgtatggaggcaaaattaccctcatgaccgacggtttcctaccatcatcgacgagaactgctggagcgatgagagcttctgccgtgacaacaaggtgagtttgttactgtattaaaaaaaaaaggagggtttgttcagtgacacggaagcgcacttgcaatggtggatgcataagcatattttatcacccaccaactgaatcttttttttttcttgtggaaaatttgtgcaatctaatgactttctggataaacttttcagctgtggtttgcactgggcaagacggcagcggagaagacggcgtggagggcagccaggggtagggacctgaagctggtcaccgtctgcccggcgctggtcaccggtccgggattccgccgccgcaactccaccgcctccatcgcctacctcaaaggtacactacaggcttcgatacgagcatgtaaactacgatcggagaaaggaacatggtgtgcctttgtgcttgtgcagtacacactgacatgtcttgcgtgtcgacaggggctcgcgccatgctcgccgacggcctgctcgcgacggcgagcgtggagacggtggcggaggcgcacgtccgggtgtacgaggcgatgggcgacaacacggccggcgggaggtacatctgctacgaccacgtggtgaagaggcccgaggagttcgcggagctggagcgccagctggggatcccgcgcagagcggcggcggcggcggccgcgcaggactccggcgaccggccggcgaggttcgatctgtgcaggcagaagctggcgaggctcatgtccacccgaaggcggtgcacgtacgacgactactactccgtcgcattcgactag</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0639200, RefSeq:Os01g0639200