Os01g0643600

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Revision as of 04:50, 25 June 2012 by 127.0.0.1 (talk) (Created page with "{{JaponicaGene| GeneName = Os01g0643600| Description = Homeobox domain containing protein| Version = NM_001050228.1 GI:115438826 GeneID:4326566| Length = 3515 bp| Definit...")
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Gene Name

Os01g0643600

Description

Homeobox domain containing protein

Version

NM_001050228.1 GI:115438826 GeneID:4326566

Length

3515 bp

Definition

Oryza sativa Japonica Group Os01g0643600, complete gene.

Source

Oryza sativa Japonica Group

 ORGANISM  Oryza sativa Japonica Group
           Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
           Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
           clade; Ehrhartoideae; Oryzeae; Oryza.
Chromosome

Chromosome 1

Location

Chromosome 1:27636050..27639564

Sequence Coding Region

27636446..27636749,27637881..27637960,27638902..27639134,27639423..27639495

Expression

GEO Profiles:Os01g0643600

Genome Context

<gbrowseImage1> name=NC_008394:27636050..27639564 source=RiceChromosome01 preset=GeneLocation </gbrowseImage1>

Gene Structure

<gbrowseImage2> name=NC_008394:27636050..27639564 source=RiceChromosome01 preset=GeneLocation </gbrowseImage2>

Coding Sequence

<cdnaseq>atgatgggggccacttctccgtcaggcctggagctcaccatggctgtccccggcctcagctcctctggttcagaaggggccggttgcaacaacaacaacgccggtggcggctgcaacatgagggacctggacatcaaccagccggcgagcggcggcgaggaggaggagttcccgatgggcagcgtggaggaggacgaggaggagaggggcgtcggtgggccccaccgccccaagaagctccgcctctccaaggagcagtcccgcctcctcgaggagagcttccgcctcaaccataccctcacgccgaagcaaaaggaggccttggcgatcaaactgaagctgcggccgaggcaggtggaggtctggtttcagaaccgtagggcaaggacgaagctgaagcagacggagatggagtgcgagtacctgaagcgctgcttcgggtcgctgacggaggagaaccgccggctgcagcgggaggtggaggagctgcgggcgatgcgggtggccccgcccacggtgctctcgccgcacaccaggcagccgctcccggcgtccgcgctcaccatgtgcccccgctgcgagcgcatcaccgccgccaccggcccgcctgccgtgcgcccgccgccgtcgtcagccgccgccgccgccccctcgcccttccaccctcgccgcccctctgcggccttctag</cdnaseq>

Protein Sequence

<aaseq>MMGATSPSGLELTMAVPGLSSSGSEGAGCNNNNAGGGCNMRDLD INQPASGGEEEEFPMGSVEEDEEERGVGGPHRPKKLRLSKEQSRLLEESFRLNHTLTP KQKEALAIKLKLRPRQVEVWFQNRRARTKLKQTEMECEYLKRCFGSLTEENRRLQREV EELRAMRVAPPTVLSPHTRQPLPASALTMCPRCERITAATGPPAVRPPPSSAAAAAPS PFHPRRPSAAF</aaseq>

Gene Sequence

<dnaseqindica>2816..3119#1605..1684#431..663#70..142#tctccctccgcctttgccccgccttccctgcccttttctcttgctgagccgcttctgcattggcttgtgatgatgggggccacttctccgtcaggcctggagctcaccatggctgtccccggcctcagctcctctggttcaggtaagctcgggagacaaccaatctcctagctatgtctccatcctacaaacgtgcgtgccttgatcttttttttttcgtcggaacatgcccatatgtgagagcgcacctccaaccttttgaagttggagttaccaacacatatatgcatggtcttcagaatgtttttctcggcatggagactgaacttgtttgcggttttcattgacgtttgcttctggtttggagactgatcaacatgagaccattcaactttcatggcaatctaacaaggagtattgttgtttgcagaaggggccggttgcaacaacaacaacgccggtggcggctgcaacatgagggacctggacatcaaccagccggcgagcggcggcgaggaggaggagttcccgatgggcagcgtggaggaggacgaggaggagaggggcgtcggtgggccccaccgccccaagaagctccgcctctccaaggagcagtcccgcctcctcgaggagagcttccgcctcaaccataccctcacgccggtcagtgtgcactgcaccctcacatcgtacacctccctccccgccctgccattctccttgctgcatttcaagttctcagctctagcatactactccatgcatatgagactcacagtctggtacatgtacctgcatcagaatctagttcttgatagaattagtgcttcgtgctcctcgatcataatcacagatcgagctcactagttcgtactaactggcgtgtggatttgggtcttgaagtggagcactcctgctgacggactgttggacattgaaagggcgtggtatatgaattgattccgagtaaatggattcggaggaccatcgatcattggatggtactcctccataattgctcggtgcttgatgatatggtccttgcacgggagatatactagtacttggtgtctgtgtgcacagccgcacagctataaaaggagaggaggcacctctgcaccctctctctctctctctctctcgcacacgtcacaccacttcagggttatgctgcataaaaacgtctactgagtactagcagcactatgcagtagttctataatgtttgttctgtgcagtggtttactggtatttacgtgctgtacagctgatagtataatgaactatatatagtgctttagatacttcataacaacgtctactgaagtatatcctagcagcactatgcagtataaagttggctttatgcagctatactggtatatttacgtacagtaaagcacagtagagagtaatgcaggagtatatgataaactagtgcctggtaatgcagttaaggctcgtttgactagcaggggtgttactgcgatttactactatactacgacccttgcaatatggagtatactgagatactctgaacctgaaggcctgcatgtgtaatggcaagcaatttaatgcgttggaaaatgtaacctctgcagaagcaaaaggaggccttggcgatcaaactgaagctgcggccgaggcaggtggaggtctggtttcagaaccgtagggcaaggtaaaaaatcccccatcttgatgcaatatatagagtacccaataataagttcacaagcttctttatttatcatttcagtagaatctactcctcagtcctcgttacactatcatatactagagtattttctccgctataaatagctatgttctgtacataccaaggcaaagacttgtacacgagaatgtgacgaagaagcatacttgatcctatatatgttagccatacatagaagtattagcatttgaaatggttcatgtgacaaaacttcacaaaagacaaaaggcattagagtacagtcaatccggcttatgctaaatgatgatcttgaaagcgaccactatatggcatttctttacaaatttgcattagagcctacgtaaaagctagattgattactacacttattagtgttggtgcaacacaagttatactagcaggaccacaatgaacccatcattccaacaaaattatgcaatcttttccctcacgaaggtgacaaggatccttaggtatccatcttgaaactagtagtgcatccaagatgtgagacaacaaacaattagctagattctctagcctgataaagtgtaggcagttccatcatcacttatgaattgctgctagatggcgtagattactccatgatactcgttcggtttgattccaggattaaaaaaaaccgagttgcttgttccaatggcgccggcacgtggactaatcggcacgtgctacagctctctgtaactttgaccctagctacctaatgcgaaatcttagtttaacacgtcccgtgaaggatggcgtacaacttgtaacctgaacgccaatccatttcaattgatccctacaaaggccattgccttcactctacgtcgccgtcgaggtgacaatgatatcggaatggacgcctaaggtcaaattgagtaactactctagttcatgccgctattttaatctgcaatcaagtagtactgagctactaataatagtaatgtcgcgcagttaacttcggcaagttcatggcagaaacatcttttcatttgttaacgctcaatcgctgcccgattgttactgatcgtaacgtacgtggcagaacagaaagtgatgggagctggtggctgtgtgcaggacgaagctgaagcagacggagatggagtgcgagtacctgaagcgctgcttcgggtcgctgacggaggagaaccgccggctgcagcgggaggtggaggagctgcgggcgatgcgggtggccccgcccacggtgctctcgccgcacaccaggcagccgctcccggcgtccgcgctcaccatgtgcccccgctgcgagcgcatcaccgccgccaccggcccgcctgccgtgcgcccgccgccgtcgtcagccgccgccgccgccccctcgcccttccaccctcgccgcccctctgcggccttctaggcccaaggtctcgcatcctaaaggccacaaaaagatgggcctcgccgtcccgtgtaaattgaaggagacgacgcagcggtagagggccccgtgttggcgttgttgcgttgggtccagtcgtctcagaggagtcagaggcgtggacaaaatgtttgttgcattgtttgtgttccattggtcgttgatcttagcttgatgatctgtgattcgcgccttgctcgtctaggtttctcttgggccgacgcatgatcttttttccccgtgtcggaccgtattgggccttttgagatcgacgggccccctccttgtttcgcatgtggacatgttatttcgtccttttgggccaacaattcagcacggtggccaacggtgcgtagttcgtcgtcgttttctttc</dnaseqindica>

External Link(s)

NCBI Gene:Os01g0643600, RefSeq:Os01g0643600